NO01G03340.1, NO01G03340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03340.1
Unique NameNO01G03340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1975
Alignment locationchr1:873858..876622 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:873858..876622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03340.1 vs.
Match: EWM29296.1 (hypothetical protein Naga_100029g15 [Nannochloropsis gaditana])

HSP 1 Score: 79.0 bits (193), Expect = 4.500e-11
Identity = 44/65 (67.69%), Postives = 46/65 (70.77%), Query Frame = 0 
Query:  291 MLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEG-GKGEERGMDENGLSWRDLHLLYRLIG 355
            MLYRGTPQRYHAEFGVLLRYP S+PP       R GEG G G  R      L+WRDLHLLYRLIG
Sbjct:    1 MLYRGTPQRYHAEFGVLLRYPSSSPP-----GHRDGEGAGDGGRR------LTWRDLHLLYRLIG 54
The following BLAST results are available for this feature:
BLAST of NO01G03340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29296.14.500e-1167.69hypothetical protein Naga_100029g15 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03340NO01G03340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03340.1NO01G03340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03340.1.cds1NO01G03340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03340.1.cds2NO01G03340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03340.1.cds3NO01G03340.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03340.1.cds4NO01G03340.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03340.1.cds5NO01G03340.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03340.1.cds6NO01G03340.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03340.1 ID=NO01G03340.1|Name=NO01G03340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1975bp
GACAAAACAAATGCCATTTGCTGTGAGGGGCGGATGTTGGAAGGAAGGGA
GGAAGAGTGGCGGGAGACACATAAGGCGGAGTGGCTTAACGTGTGATGAT
GATGATGATGATGGCGAAGCTTGACTGGCCGAAAGTTGGCACCAGATCCT
CCCAAGCTACAGCCGCCGCATGTATTTAAACCTCTCACGAGCCCTAGATG
GTGCAGAGTGTGTCCTGGCGTGTGTGGAGGTGGTGTTGAGTTGAGCAGCG
AAGCGACGAAATGCCGTCTCAGCGATTTGACAGCGATGGTGATGGCGTTG
ACTGTTGGGTTGCGGTCGTGCGGAGGCCAGGGCGGGTGTGGTACCGTAAA
TGCGGCGTTGAAGGATATTTCTCACGATGCTGCGTCGCTATGTGACTTGG
AGCTCTGCGTAATGTGTGACAGTGCCGAATTGAACCAGACACACACAGAA
GGCGAAGAAGCACAAGGAGGACTCAGAGAGCGCGAAGACAAACCTCCCGC
CAAGAGCTTGAGAGTTGTTTGCGTATCTCACCCACCCACCACCACAAACT
ATAGGCCTCATGGAGCCATTAGGACTTTCGGAGTCATTTGAGGAAGGGAC
AGGGGTTGTGACCGAATCCATGGAGGATTTGCCGGAGGGGGAAGAGCAAG
AGAATCAGGCTACGACATTGCCCACTCTCTTGAAGCCGCAGGAGAACGGG
GATGCTACTGATGCAGCCCAGGACCCGCATAATACCACCCTTGAGCCAGC
AGTAGTGCCTGCGACGAATATAACCGAACACAATGAGCCGGCTCCAGGTG
CCAGCGCTTCGCGAGCAGAGCATGACAGGAGTCCCATCCCTACAGCTGGT
ACCACCACCACTCCCCACACCCCTGCTACTCATACGGGCAAGCCACGCCC
CAATCTCCAAGGCACATTGATTGGACTTTTCGTCGCCATAGATCCTGTCA
CTCAAAGGGGGAAAGTGAACGTCAAGCGTGAGCTTGAGAACATGGGGATC
TACCAACGCGACTTGGCCCCATGGGAAGAAGTTCAGCTTTCGCTCGAGCA
GGCCTTTTACCTTGTCGCAGATTTGAAGCGTCTTGAGGTGTATTTGCCCT
CACCACCACCTCCGTTTCAGCAGCAGGAGGAAGAGGAGAAGGAGGTGGAA
TTGGAGGAAGAAGGGCAGGAAGGGCACGTAACGGATCTGGCGGACGGAAA
GGCAGATGAGCAACAGCAGCAGCAACAACAACAACAGCAGAAAATTGAGG
AGATGGCGGCGGAAAGTGAGCCACTGGATGGTGCAAAACCAAGGGTCTTG
AGTGTGATGGAGTGCTGGAAAGCGTTCCGCACTGCCAGCCCCACCTTCGT
CAAAAGCGTGGGCAGTTACCGCTACTTCCGAGAACAAGGCTTTGTCGTGC
ACGGTGGTCTCAATCTTGGCTTGGATTTAATGCTATATCGTGGCACCCCT
CAACGGTATCACGCCGAATTCGGAGTCCTCCTCCGCTATCCTCCCTCAGC
CCCTCCTCCCACGTCTTCTCTCACCGAGAGGGGAGGAGAGGGAGGAAAAG
GAGAGGAGAGGGGGATGGATGAGAATGGTTTGAGCTGGCGGGATCTTCAT
TTGCTGTATCGATTGATTGGGGAGGTGCGCAAGACGCTCATTCTCGGTCA
CGTCCGCCTGGGGAATCTTGAAGAGAAGCCAGAGGAAAAAGCTGCAGTCG
ATAGGGAGGGAGGGGAAGAAAGTGATGGAGAAATGCGACGAGAGATGCAG
GAGTGGTACCGTGGGCTGAGTGTTTATGAAGTGGCCGTCACACCATGGAG
GGCAGGGACGCCGTTAGCCCGTCTCAAGATGAGCAAGCAAAAGGGGAACG
CTGCTCAGGTTAAGAGGGGGGGAGGAGGGCAGGCTGGGGGGAAGAAACGA
GGGAGGGGAGGAGGGCAGGGAAGCGGAGCCGAGGAGGAGCACCCTAGCAA
GAGACAGCATGTTTGACGCAATGAA
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protein sequence of NO01G03340.1

>NO01G03340.1-protein ID=NO01G03340.1-protein|Name=NO01G03340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MEPLGLSESFEEGTGVVTESMEDLPEGEEQENQATTLPTLLKPQENGDAT
DAAQDPHNTTLEPAVVPATNITEHNEPAPGASASRAEHDRSPIPTAGTTT
TPHTPATHTGKPRPNLQGTLIGLFVAIDPVTQRGKVNVKRELENMGIYQR
DLAPWEEVQLSLEQAFYLVADLKRLEVYLPSPPPPFQQQEEEEKEVELEE
EGQEGHVTDLADGKADEQQQQQQQQQQKIEEMAAESEPLDGAKPRVLSVM
ECWKAFRTASPTFVKSVGSYRYFREQGFVVHGGLNLGLDLMLYRGTPQRY
HAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLY
RLIGEVRKTLILGHVRLGNLEEKPEEKAAVDREGGEESDGEMRREMQEWY
RGLSVYEVAVTPWRAGTPLARLKMSKQKGNAAQVKRGGGGQAGGKKRGRG
GGQGSGAEEEHPSKRQHV*
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mRNA from alignment at chr1:873858..876622-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03340.1 ID=NO01G03340.1|Name=NO01G03340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2765bp|location=Sequence derived from alignment at chr1:873858..876622- (Nannochloropsis oceanica)
GACAAAACAAATGCCATTTGCTGTGAGGGGCGGATGTTGGAAGGAAGGGA
GGAAGAGTGGCGGGAGACACATAAGGCGGAGTGGCTTAACGTGTGATGAT
GATGATGATGATGGCGAAGCTTGACTGGCCGAAAGTTGGCACCAGATCCT
CCCAAGCTACAGCCGCCGCATGTATTTAAACCTCTCACGAGCCCTAGATG
GTGCAGAGTGTGTCCTGGCGTGTGTGGAGGTGGTGTTGAGTTGAGCAGCG
AAGCGACGAAATGCCGTCTCAGCGATTTGACAGCGATGGTGATGGCGTTG
ACTGTTGGGTTGCGGTCGTGCGGAGGCCAGGGCGGGTGTGGTACCGTAAA
TGCGGCGTTGAAGGATATTTCTCACGATGCTGCGTCGCTATGTGACTTGG
AGCTCTGCGTAATGTGTGACAGTGCCGAATTGAACCAGACACACACAGAA
GGCGAAGAAGCACAAGGAGGACTCAGAGAGCGCGAAGACAAACCTCCCGC
CAAGAGCTTGAGAGTTGTTTGCGTATCTCACCCACCCACCACCACAAACT
ATAGGCCTCATGGAGCCATTAGGACTTTCGGAGTCATTTGAGGAAGGGAC
AGGGGTTGTGACCGAATCCATGGAGGATTTGCCGGAGGGGGAAGAGCAAG
AGAATCAGGCTACGACATTGCCCACTCTCTTGAAGCCGCAGGAGAACGGG
GATGCTACTGATGCAGCCCAGGACCCGCATAATACCACCCTTGAGCCAGC
AGTAGTGCCTGCGACGAATATAACCGAACACAATGAGCCGGCTCCAGGTG
CCAGCGCTTCGCGAGCAGAGCATGACAGGAGTCCCATCCCTACAGCTGGT
ACCACCACCACTCCCCACACCCCTGCTACTCATACGGGCAAGCCACGCCC
CAATCTCCAAGGCACATTGATTGGACTTTTCGTCGCCATAGATCCTGTCA
CTCAAAGGTACGTGTATGGAAGAGCAGGGGATAGGAGGGATGCATATTAG
ACCACAGACATACGTATATATAGATACAATTTATCTTCAACCCCCCTCCA
TTTTCGTCCTTCTACGCACGTTCGACAGGGGGAAAGTGAACGTCAAGCGT
GAGCTTGAGAACATGGGGATCTACCAACGCGTACGTATTGTTGTCTCATT
ATCGATCGTTGCTCTCAAGAATCGACCACACCAACCTGACCGGTAATCCA
TCCCTACCTTTCCTACTTTACTCACCGCTTCCTCCCTCATATTTATTTTC
ATAAGGACTTGGCCCCATGGGAAGAAGTTCAGCTTTCGCTCGAGCAGGCC
TTTTACCTTGTCGCAGATTTGAAGCGTCTTGAGGTGTATTTGCCCTCACC
ACCACCTCCGTTTCAGCAGCAGGAGGAAGAGGAGAAGGAGGTGGAATTGG
AGGAAGAAGGGCAGGAAGGGCACGTAACGGATCTGGCGGACGGAAAGGCA
GATGAGCAACAGCAGCAGCAACAACAACAACAGCAGAAAATTGAGGAGAT
GGCGGCGGAAAGTGAGCCACTGGATGGTGCAAAACCAAGGGTCTTGAGTG
TGATGGAGTGCTGGAAAGCGTACGTAATATTTTTTAATGTCCGACAAGAT
CCCAAGCTTCTCTCCTCAACTGCATTTCTCTCTCTCTTTTGTTTTCTTCT
CCTCTTTGAAGTATCTTACTAAACACATAGCCATTCTCTAATTTCCTCCA
ATTTCCTCTAACCTATATCCCTCGCCCATTTTCTGATGCAGGTTCCGCAC
TGCCAGCCCCACCTTCGTCAAAAGCGTGGGCAGTTACCGCTACTTCCGAG
AACAAGGGTAAGTCCGGCTGGCTGAAGAAAAGATGACGTCCACATGAGTC
AAGATGCATGCCATAATTAGCGTGCATTATTAATCGCTTGTTGAATTTCC
CCCCCAATTTGAGGGGATGGTATTGAAAGCGCTCTTTACTATCCGCTCTT
GCCGCCCGCTTTCAGCATTCTTATTCATTTATTCGCTCCCTGTCTCTCTT
CCTCCCTGCCGCCCCGACTCTTTCTCTCTAGCTTTGTCGTGCACGGTGGT
CTCAATCTTGGCTTGGATTTAATGCTATATCGTGGCACCCCTCAACGGTA
TCACGCCGAATTCGGAGTCCTCCTCCGCTATCCTCCCTCAGCCCCTCCTC
CCACGTCTTCTCTCACCGAGAGGGGAGGAGAGGGAGGAAAAGGAGAGGAG
AGGGGGATGGATGAGAATGGTTTGAGCTGGCGGGATCTTCATTTGCTGTA
TCGATTGATTGGGGTAAGTGGTTGAAACAACGTGAAGGTGGAGTATCCTC
CTTGTCGCCCTGCTGTTTTGTGCGCTCCTTTTGGCGCACACTTTTATTAT
TTGCTGATGTGATGTACTCATTTTCCCTCCTTCCATCTTTCCCTCCCTCT
CTTTCCTACAGGAGGTGCGCAAGACGCTCATTCTCGGTCACGTCCGCCTG
GGGAATCTTGAAGAGAAGCCAGAGGAAAAAGCTGCAGTCGATAGGGAGGG
AGGGGAAGAAAGTGATGGAGAAATGCGACGAGAGATGCAGGAGTGGTACC
GTGGGCTGAGTGTTTATGAAGTGGCCGTCACACCATGGAGGGCAGGGACG
CCGTTAGCCCGTCTCAAGATGAGCAAGCAAAAGGGGAACGCTGCTCAGGT
TAAGAGGGGGGGAGGAGGGCAGGCTGGGGGGAAGAAACGAGGGAGGGGAG
GAGGGCAGGGAAGCGGAGCCGAGGAGGAGCACCCTAGCAAGAGACAGCAT
GTTTGACGCAATGAA
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Coding sequence (CDS) from alignment at chr1:873858..876622-

>NO01G03340.1 ID=NO01G03340.1|Name=NO01G03340.1|organism=Nannochloropsis oceanica|type=CDS|length=1407bp|location=Sequence derived from alignment at chr1:873858..876622- (Nannochloropsis oceanica)
ATGGAGCCATTAGGACTTTCGGAGTCATTTGAGGAAGGGACAGGGGTTGT
GACCGAATCCATGGAGGATTTGCCGGAGGGGGAAGAGCAAGAGAATCAGG
CTACGACATTGCCCACTCTCTTGAAGCCGCAGGAGAACGGGGATGCTACT
GATGCAGCCCAGGACCCGCATAATACCACCCTTGAGCCAGCAGTAGTGCC
TGCGACGAATATAACCGAACACAATGAGCCGGCTCCAGGTGCCAGCGCTT
CGCGAGCAGAGCATGACAGGAGTCCCATCCCTACAGCTGGTACCACCACC
ACTCCCCACACCCCTGCTACTCATACGGGCAAGCCACGCCCCAATCTCCA
AGGCACATTGATTGGACTTTTCGTCGCCATAGATCCTGTCACTCAAAGGG
GGAAAGTGAACGTCAAGCGTGAGCTTGAGAACATGGGGATCTACCAACGC
GACTTGGCCCCATGGGAAGAAGTTCAGCTTTCGCTCGAGCAGGCCTTTTA
CCTTGTCGCAGATTTGAAGCGTCTTGAGGTGTATTTGCCCTCACCACCAC
CTCCGTTTCAGCAGCAGGAGGAAGAGGAGAAGGAGGTGGAATTGGAGGAA
GAAGGGCAGGAAGGGCACGTAACGGATCTGGCGGACGGAAAGGCAGATGA
GCAACAGCAGCAGCAACAACAACAACAGCAGAAAATTGAGGAGATGGCGG
CGGAAAGTGAGCCACTGGATGGTGCAAAACCAAGGGTCTTGAGTGTGATG
GAGTGCTGGAAAGCGTTCCGCACTGCCAGCCCCACCTTCGTCAAAAGCGT
GGGCAGTTACCGCTACTTCCGAGAACAAGGCTTTGTCGTGCACGGTGGTC
TCAATCTTGGCTTGGATTTAATGCTATATCGTGGCACCCCTCAACGGTAT
CACGCCGAATTCGGAGTCCTCCTCCGCTATCCTCCCTCAGCCCCTCCTCC
CACGTCTTCTCTCACCGAGAGGGGAGGAGAGGGAGGAAAAGGAGAGGAGA
GGGGGATGGATGAGAATGGTTTGAGCTGGCGGGATCTTCATTTGCTGTAT
CGATTGATTGGGGAGGTGCGCAAGACGCTCATTCTCGGTCACGTCCGCCT
GGGGAATCTTGAAGAGAAGCCAGAGGAAAAAGCTGCAGTCGATAGGGAGG
GAGGGGAAGAAAGTGATGGAGAAATGCGACGAGAGATGCAGGAGTGGTAC
CGTGGGCTGAGTGTTTATGAAGTGGCCGTCACACCATGGAGGGCAGGGAC
GCCGTTAGCCCGTCTCAAGATGAGCAAGCAAAAGGGGAACGCTGCTCAGG
TTAAGAGGGGGGGAGGAGGGCAGGCTGGGGGGAAGAAACGAGGGAGGGGA
GGAGGGCAGGGAAGCGGAGCCGAGGAGGAGCACCCTAGCAAGAGACAGCA
TGTTTGA
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Synonyms
Publications