NO01G03310.1, NO01G03310.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G03310.1
Unique Name	NO01G03310.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2085
Alignment location	chr1:867102..870196 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:867102..870196 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO01G03310.1 vs.
Match: EWM29291.1 (gcn5-related n-acetyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 674.9 bits (1740), Expect = 2.300e-190
Identity = 345/450 (76.67%), Postives = 375/450 (83.33%), Query Frame = 0

Query:   45 GRILAEVTVPENMRFRQMELRDAAAVFHLGEEVFNADSFPQLYRTWDSFEVIENLSGDGELCLVAEELLESDSNGTVAVAAKGSADGGDDTAVAFAHPQSRIVGFIFGSITEKRKREHSCGLLGWVGVAPSHQRRNIGTVLAHKLFEQFWEDGISLIVADTPMENTPAIKFLHRMGFCTPVYHIYMSLNLSRHHHRAQHLPPAPERILPPEAKGVKLRPMSIDDLAAVHDLGEKIYDQYLYPNLYRIWSESEVVELFGSDSEFCQVAEYEGRVVGFVMGTTISKRRSSWRYGYLVWLGVAPEVQRFGVGKRLFQAFHDLMVEDGCRIIMIDTQADNVPARKFFERAGFGSLESHVYFSKQVGPDDLIASEERVLRQASLTGGGHSFSSSASTTKSSIVATKTVLKLGEEEGAGGGRGRAAGKAGGPGKHGRFKVTRLFRFKRARSVLETA 495
            GRILAEV VPENM FRQMELRDAAAVFHLGEE+FNADSFPQLYRTWD+FEVIENL GDGELCLVAEE+LE  S+G V      + +GG        HP  RIVGFIFGSITEKRK+EHSCGLLGWVGVAPSHQRRNIGTVLAHKLFE F E+GISLIVADTP ENTPAI+FLHRMGF TPVYH+YMSLNL+RH  R QHLPP  ER+LPPEAKGVKLRPMSIDDLAAVHDLGE++YD++LYPNLYRIWSESEV+ELFGSDSEFC+VAEYEG+VVGFVMGTTISKRRSSWRYGYLVWLGVAPEVQRFGVGKRLFQ+F DLMVEDGCRIIMIDTQADN+PARKFFERAGFGSLESHVYFSK VGP+D+I SEE + RQ S T G    S  +ST  ++I+A     K            R   +A  P   G FKVTRLFRFKR+ SVLETA
Sbjct:   57 GRILAEVAVPENMYFRQMELRDAAAVFHLGEEIFNADSFPQLYRTWDAFEVIENLDGDGELCLVAEEVLEGVSSGIVP-----TGEGGPGRL----HPHGRIVGFIFGSITEKRKQEHSCGLLGWVGVAPSHQRRNIGTVLAHKLFEAFLEEGISLIVADTPKENTPAIQFLHRMGFGTPVYHVYMSLNLARHQQRTQHLPPPQERVLPPEAKGVKLRPMSIDDLAAVHDLGERVYDRHLYPNLYRIWSESEVLELFGSDSEFCRVAEYEGKVVGFVMGTTISKRRSSWRYGYLVWLGVAPEVQRFGVGKRLFQSFQDLMVEDGCRIIMIDTQADNLPARKFFERAGFGSLESHVYFSKVVGPEDVIDSEEMICRQPSFTDGE---SPPSSTFNNAILAAAVKSK------------RCTHRARKP---GGFKVTRLFRFKRSHSVLETA 479

The following BLAST results are available for this feature:

BLAST of NO01G03310.1 vs.

BLAST of NO01G03310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29291.1	2.300e-190	76.67	gcn5-related n-acetyltransferase [Nannochloropsis ...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G03310	NO01G03310	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G03310.1	NO01G03310.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G03310.1.cds1	NO01G03310.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G03310.1.cds2	NO01G03310.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G03310.1.cds3	NO01G03310.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G03310.1.cds4	NO01G03310.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G03310.1.cds5	NO01G03310.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO01G03310.1.cds6	NO01G03310.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:867102..870196-
coding sequence from alignment at chr1:867102..870196-

mRNA sequence

>NO01G03310.1 ID=NO01G03310.1|Name=NO01G03310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2085bp
ACAGAACTTTAGCGTCCGTGTCACTATGGACTTGTATGAAGCTGCCGAGG
CCAATACCAAGCCCGCTCGAAAGTCTTGCCCCTTGACCCTCGCCCGGCAG
CAAGAGGAGCACAAGCTAGAGCAGGAGCAAATATGCGTGATCACCCCGCG
CGAACCCGGCCGCATCCTGGCAGAAGTCACAGTCCCGGAGAATATGCGCT
TCCGGCAGATGGAATTGCGGGACGCGGCCGCCGTATTTCATTTGGGCGAG
GAAGTCTTTAATGCCGACTCTTTCCCCCAGTTGTACAGGACGTGGGATTC
TTTCGAAGTGATCGAGAACCTGAGCGGCGATGGTGAGCTCTGCCTCGTGG
CGGAAGAGCTCCTCGAGAGCGACAGTAATGGCACTGTTGCTGTTGCTGCC
AAGGGGAGTGCTGATGGTGGTGATGATACCGCCGTTGCTTTTGCTCACCC
GCAGAGCCGGATCGTCGGATTCATATTCGGCTCCATCACAGAGAAGAGGA
AACGAGAGCATAGCTGCGGCTTGTTGGGGTGGGTGGGGGTTGCCCCGAGT
CATCAACGGCGGAATATTGGCACTGTGCTGGCCCACAAGCTGTTTGAGCA
ATTTTGGGAGGATGGGATTAGTTTGATCGTGGCCGATACGCCCATGGAGA
ACACTCCAGCGATCAAGTTTTTGCATCGCATGGGATTTTGTACGCCTGTG
TATCATATTTACATGAGCCTCAACCTCTCTCGGCATCACCATCGGGCCCA
GCACCTACCCCCCGCCCCCGAGCGCATCCTGCCTCCCGAAGCCAAGGGGG
TAAAGCTCCGTCCTATGTCAATTGACGACCTTGCTGCGGTCCATGACTTG
GGGGAGAAGATTTACGACCAATATTTGTACCCGAATTTGTACCGCATTTG
GTCGGAGAGCGAGGTTGTGGAGCTGTTTGGTTCAGACTCGGAATTTTGTC
AGGTGGCTGAGTATGAAGGGAGGGTCGTAGGCTTCGTCATGGGCACCACC
ATCTCCAAGCGTCGTAGCTCGTGGCGGTACGGCTATTTGGTCTGGCTGGG
CGTCGCCCCCGAGGTGCAACGTTTTGGTGTAGGCAAACGCCTGTTCCAAG
CATTTCATGACCTCATGGTGGAAGATGGTTGCCGTATTATTATGATTGAC
ACCCAGGCAGACAACGTTCCGGCCCGGAAATTCTTCGAACGCGCGGGGTT
TGGCTCGTTGGAGTCGCATGTTTATTTCAGTAAGCAAGTGGGGCCAGATG
ACCTGATCGCCAGCGAAGAGAGGGTCCTGCGCCAAGCTTCTTTGACGGGT
GGTGGCCATTCCTTCTCCTCGTCCGCTTCCACAACAAAATCTTCCATTGT
CGCCACCAAGACTGTGCTGAAGCTGGGAGAAGAGGAGGGAGCAGGCGGTG
GTAGAGGAAGGGCGGCAGGGAAGGCGGGGGGGCCCGGGAAACATGGGAGA
TTCAAAGTTACGCGGCTTTTTCGTTTCAAGCGCGCGCGTTCTGTGTTGGA
GACGGCGGTAGCTGCTGCGGGATTGACTGCTGCTGCCATTGGTGATGGTG
GATGTGGAGGAGGACGGAGGGGAGGGATGAAGACTCGTCTGCCGCCCATG
CTTGTAACGGCTGCTGCCGCTGCTGTTGAGAATGAGAAAGGAGGAGACAA
AAATGGAACGAAGAAGAAAGTGGAAGAAAGGGAGTCGGTGGAAGCTATGC
CAAGCTCCCGGCCGTCGACGCGGCGGAATTGTAAGGCGTCCACATCTCCG
GCGACAGGCGGGAAAATGCGTGCAAAGCGGATTAAGAAGTAATAGGGAGG
ACAAGATGAGAAGGATGATATATATATACGACGAAAAGGTAGTAAGTAAC
GGGGGTAATAGGTGTGAGTCACACGTGACAGGAAACAGATCAGTCAAATT
CGCGTTAAGTAAAGTGTGTGCCATCATGGCAACCATCCGTTGTCTACCTC
AATAAAAAAGACACGAATGGAGAAATGGGGGATACTTTTTTCGAATAGCA
AATAGTGGTGCGACACAGTGCTGGACAAAAGAAACGATAAACACAGTAGC
AATGTGACGACAGAAGAACAGATAAAATGGAAACA

protein sequence of NO01G03310.1

>NO01G03310.1-protein ID=NO01G03310.1-protein|Name=NO01G03310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=589bp
MDLYEAAEANTKPARKSCPLTLARQQEEHKLEQEQICVITPREPGRILAE
VTVPENMRFRQMELRDAAAVFHLGEEVFNADSFPQLYRTWDSFEVIENLS
GDGELCLVAEELLESDSNGTVAVAAKGSADGGDDTAVAFAHPQSRIVGFI
FGSITEKRKREHSCGLLGWVGVAPSHQRRNIGTVLAHKLFEQFWEDGISL
IVADTPMENTPAIKFLHRMGFCTPVYHIYMSLNLSRHHHRAQHLPPAPER
ILPPEAKGVKLRPMSIDDLAAVHDLGEKIYDQYLYPNLYRIWSESEVVEL
FGSDSEFCQVAEYEGRVVGFVMGTTISKRRSSWRYGYLVWLGVAPEVQRF
GVGKRLFQAFHDLMVEDGCRIIMIDTQADNVPARKFFERAGFGSLESHVY
FSKQVGPDDLIASEERVLRQASLTGGGHSFSSSASTTKSSIVATKTVLKL
GEEEGAGGGRGRAAGKAGGPGKHGRFKVTRLFRFKRARSVLETAVAAAGL
TAAAIGDGGCGGGRRGGMKTRLPPMLVTAAAAAVENEKGGDKNGTKKKVE
ERESVEAMPSSRPSTRRNCKASTSPATGGKMRAKRIKK*

mRNA from alignment at chr1:867102..870196-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G03310.1 ID=NO01G03310.1|Name=NO01G03310.1|organism=Nannochloropsis oceanica|type=mRNA|length=3095bp|location=Sequence derived from alignment at chr1:867102..870196- (Nannochloropsis oceanica)
ACAGAACTTTAGCGTCCGTGTCACTATGGACTTGTATGAAGCTGCCGAGG
CCAATACCAAGCCCGCTCGAAAGTCTTGCCCCTTGACCCTCGCCCGGCAG
CAAGAGGAGCACAAGCTAGAGCAGGAGCAAATATGCGTGATCACCCCGCG
CGAACCCGGCCGCATCCTGGCAGAAGTCACAGTCCCGGAGAATATGCGCT
TCCGGCAGATGGAATTGCGGGACGCGGCCGCCGTATTTCATTTGGGCGAG
GAAGTCTTTAATGGTACGGATGTAAGGGTGTATAGAAAAATGCGGGGTGG
GAGGGTATGGATGGTAGGAGCTACAGGGCGATCGATACACGCGCATGCTT
AAGCATGCTAACGGGAAAGTGGAATTTCCAGAAGGATTGAGGAGAGCGAA
TGAAAGGGCATGTGCACGCTAACCATTATCATCACATTCAACATTCTTTT
CCTGCCCTACCTCGTCCACCCCTTTGTCTCCACACAGCCGACTCTTTCCC
CCAGTTGTACAGGACGTGGGATTCTTTCGAAGTGATCGAGAACCTGAGCG
GCGATGGTGAGCTCTGCCTCGTGGCGGAAGAGCTCCTCGAGAGCGACAGT
AATGGCACTGTTGCTGTTGCTGCCAAGGGGAGTGCTGATGGTGGTGATGA
TACCGCCGTTGCTTTTGCTCACCCGCAGAGCCGGATCGTCGGATTCATAT
TCGGCTCCATCACAGAGAAGAGGAAACGAGAGCATAGCTGCGGCTTGTTG
GGGTGGGTGGGGGTTGCCCCGAGTCATCAACGGCGGAATATTGGCACTGT
GCTGGCCCACAAGCTGTTTGAGCAATTTTGGGAGGATGGGATTAGTTTGA
TCGTGGCCGATACGCCCATGGAGAACACTCCAGCGATCAAGTTTTTGCAT
CGCATGGGATTTTGTACGCCTGTGTATCATGTGAGTCATCGTATTCGTAT
GTGTCTTCTGGGGTGTGTCGTGGATTTTAGTCTTTGTTGCTTGTGAAATG
GTTGGCTCCACTGCCTCTTCTACTTGGCCTTTCAATTTTCTATCTTCCAT
TTATCAGTCCTATGTATTGTTCGCTGTAGCAGCAGTCCCTAATCGTATAA
CTTTATTATAACATGACTTACACACATTTTTCCTCTCTCACATCATTCGT
AGATTTACATGAGCCTCAACCTCTCTCGGCATCACCATCGGGCCCAGCAC
CTACCCCCCGCCCCCGAGCGCATCCTGCCTCCCGAAGCCAAGGGGGTAAA
GCTCCGTCCTATGTCAATTGACGACCTTGCTGCGGTCCATGACTTGGGGG
AGAAGATTTACGACCAATATTTGTACCCGAATTTGTACCGCATTTGGTAG
GTGGGAGGGAGGGAGAGGAGGGATCGAGGGTAGATGTACAGGGACAAAGC
AAGCCTGAGGTTGAGAAATGGACAGAAATTACAAATAGATCACATTCACA
CACACATGTGCACTCACAATCACGCAAACAAACGTTCGTAGGTCGGAGAG
CGAGGTTGTGGAGCTGTTTGGTTCAGACTCGGAATTTTGTCAGGTGGCTG
AGTATGAAGGGAGGGTCGTAGGCTTCGTCATGGGCACCACCATCTCCAAG
CGTCGTAGCTCGTGGCGGTACGGCTATTTGGGTAAGAGAATGATAGGACC
AAGACGTGAAGCTCTGGAAAAATTTGAACGCGTAGACTGAACATTCTGTA
CTCCCATCTCTTTCTTCACTTGCCCTCTACCCCTCCCTCCTTCCACCTGC
CCAACAGTCTGGCTGGGCGTCGCCCCCGAGGTGCAACGTTTTGGTGTAGG
CAAACGCCTGTTCCAAGCATTTCATGACCTCATGGTGGAAGATGGTTGCC
GTATTATTATGATTGACACCCAGGCAGACAACGTTCCGGCCCGGAAATTC
TTCGAACGCGCGGGGTTTGGCTCGTTGGAGTCGCATGTTTATTTCAGGTA
TGTCCTTTTTTATCCATCTGGTCCTGTGATAGCGGACAAGGGTGTCGTAT
AATGATGTATCATCTAGGTAGATGACCTCCCATCGTGCGGGATGTGGCTC
GTTGGAATGCCTCCGACTCTTCGTTACAAATTGTCGCTTTCTTCTCTTGC
TAAGCAGCACGATGAGGGGCAAGTGCAGGAGCAAGAATAAGAGCGAATCA
GCAACAGGAAAAGCTGTACCTCGAGTCAAATCGACTACCCATCAACAAAT
TACACCCATCCTACCCCTGCGCCCCTCCCTCCCTCAACAGTAAGCAAGTG
GGGCCAGATGACCTGATCGCCAGCGAAGAGAGGGTCCTGCGCCAAGCTTC
TTTGACGGGTGGTGGCCATTCCTTCTCCTCGTCCGCTTCCACAACAAAAT
CTTCCATTGTCGCCACCAAGACTGTGCTGAAGCTGGGAGAAGAGGAGGGA
GCAGGCGGTGGTAGAGGAAGGGCGGCAGGGAAGGCGGGGGGGCCCGGGAA
ACATGGGAGATTCAAAGTTACGCGGCTTTTTCGTTTCAAGCGCGCGCGTT
CTGTGTTGGAGACGGCGGTAGCTGCTGCGGGATTGACTGCTGCTGCCATT
GGTGATGGTGGATGTGGAGGAGGACGGAGGGGAGGGATGAAGACTCGTCT
GCCGCCCATGCTTGTAACGGCTGCTGCCGCTGCTGTTGAGAATGAGAAAG
GAGGAGACAAAAATGGAACGAAGAAGAAAGTGGAAGAAAGGGAGTCGGTG
GAAGCTATGCCAAGCTCCCGGCCGTCGACGCGGCGGAATTGTAAGGCGTC
CACATCTCCGGCGACAGGCGGGAAAATGCGTGCAAAGCGGATTAAGAAGT
AATAGGGAGGACAAGATGAGAAGGATGATATATATATACGACGAAAAGGT
AGTAAGTAACGGGGGTAATAGGTGTGAGTCACACGTGACAGGAAACAGAT
CAGTCAAATTCGCGTTAAGTAAAGTGTGTGCCATCATGGCAACCATCCGT
TGTCTACCTCAATAAAAAAGACACGAATGGAGAAATGGGGGATACTTTTT
TCGAATAGCAAATAGTGGTGCGACACAGTGCTGGACAAAAGAAACGATAA
ACACAGTAGCAATGTGACGACAGAAGAACAGATAAAATGGAAACA

Coding sequence (CDS) from alignment at chr1:867102..870196-

>NO01G03310.1 ID=NO01G03310.1|Name=NO01G03310.1|organism=Nannochloropsis oceanica|type=CDS|length=1767bp|location=Sequence derived from alignment at chr1:867102..870196- (Nannochloropsis oceanica)
ATGGACTTGTATGAAGCTGCCGAGGCCAATACCAAGCCCGCTCGAAAGTC
TTGCCCCTTGACCCTCGCCCGGCAGCAAGAGGAGCACAAGCTAGAGCAGG
AGCAAATATGCGTGATCACCCCGCGCGAACCCGGCCGCATCCTGGCAGAA
GTCACAGTCCCGGAGAATATGCGCTTCCGGCAGATGGAATTGCGGGACGC
GGCCGCCGTATTTCATTTGGGCGAGGAAGTCTTTAATGCCGACTCTTTCC
CCCAGTTGTACAGGACGTGGGATTCTTTCGAAGTGATCGAGAACCTGAGC
GGCGATGGTGAGCTCTGCCTCGTGGCGGAAGAGCTCCTCGAGAGCGACAG
TAATGGCACTGTTGCTGTTGCTGCCAAGGGGAGTGCTGATGGTGGTGATG
ATACCGCCGTTGCTTTTGCTCACCCGCAGAGCCGGATCGTCGGATTCATA
TTCGGCTCCATCACAGAGAAGAGGAAACGAGAGCATAGCTGCGGCTTGTT
GGGGTGGGTGGGGGTTGCCCCGAGTCATCAACGGCGGAATATTGGCACTG
TGCTGGCCCACAAGCTGTTTGAGCAATTTTGGGAGGATGGGATTAGTTTG
ATCGTGGCCGATACGCCCATGGAGAACACTCCAGCGATCAAGTTTTTGCA
TCGCATGGGATTTTGTACGCCTGTGTATCATATTTACATGAGCCTCAACC
TCTCTCGGCATCACCATCGGGCCCAGCACCTACCCCCCGCCCCCGAGCGC
ATCCTGCCTCCCGAAGCCAAGGGGGTAAAGCTCCGTCCTATGTCAATTGA
CGACCTTGCTGCGGTCCATGACTTGGGGGAGAAGATTTACGACCAATATT
TGTACCCGAATTTGTACCGCATTTGGTCGGAGAGCGAGGTTGTGGAGCTG
TTTGGTTCAGACTCGGAATTTTGTCAGGTGGCTGAGTATGAAGGGAGGGT
CGTAGGCTTCGTCATGGGCACCACCATCTCCAAGCGTCGTAGCTCGTGGC
GGTACGGCTATTTGGTCTGGCTGGGCGTCGCCCCCGAGGTGCAACGTTTT
GGTGTAGGCAAACGCCTGTTCCAAGCATTTCATGACCTCATGGTGGAAGA
TGGTTGCCGTATTATTATGATTGACACCCAGGCAGACAACGTTCCGGCCC
GGAAATTCTTCGAACGCGCGGGGTTTGGCTCGTTGGAGTCGCATGTTTAT
TTCAGTAAGCAAGTGGGGCCAGATGACCTGATCGCCAGCGAAGAGAGGGT
CCTGCGCCAAGCTTCTTTGACGGGTGGTGGCCATTCCTTCTCCTCGTCCG
CTTCCACAACAAAATCTTCCATTGTCGCCACCAAGACTGTGCTGAAGCTG
GGAGAAGAGGAGGGAGCAGGCGGTGGTAGAGGAAGGGCGGCAGGGAAGGC
GGGGGGGCCCGGGAAACATGGGAGATTCAAAGTTACGCGGCTTTTTCGTT
TCAAGCGCGCGCGTTCTGTGTTGGAGACGGCGGTAGCTGCTGCGGGATTG
ACTGCTGCTGCCATTGGTGATGGTGGATGTGGAGGAGGACGGAGGGGAGG
GATGAAGACTCGTCTGCCGCCCATGCTTGTAACGGCTGCTGCCGCTGCTG
TTGAGAATGAGAAAGGAGGAGACAAAAATGGAACGAAGAAGAAAGTGGAA
GAAAGGGAGTCGGTGGAAGCTATGCCAAGCTCCCGGCCGTCGACGCGGCG
GAATTGTAAGGCGTCCACATCTCCGGCGACAGGCGGGAAAATGCGTGCAA
AGCGGATTAAGAAGTAA

Synonyms

Publications