NO01G03210.1, NO01G03210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03210.1
Unique NameNO01G03210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1375
Alignment locationchr1:844131..845587 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:844131..845587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G03210.1 vs.
Match: EWM29255.1 (Acyl-CoA N-acyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 317.0 bits (811), Expect = 7.800e-83
Identity = 192/379 (50.66%), Postives = 231/379 (60.95%), Query Frame = 0
Query:    3 RGSSSVFGSLTGCLRNGNKAKKRPPSSSSA--------SFANRAVAASKKAPTQTFLDFGQKSLGKRTLCGVCGLLYVNGEAEDEKDHASFCRSISAGLVFQGWKGQRLVWGAEGKD-RVIEVRPGDGGPQLLKMGEVKRVMDQEMGFVPLVEGQSALRPTEKAFLYVHDKRVVGCLVAEKIVAAHPVLEAMPSEEWEGRETTAEELVHGAKDGRLQECGGKKACKD-HAGAENDKQEQKDQKPPPAKMHRVDDKDTTSNSNSSSSSIGRTKGKALAPPSSQFRQGRKGKEEAAASLLPKGVAYSLHDMAEATLGVKQVWVSKNSRRKGIARLMLEVARARFYYGFVVPRAKVAFSQLSNAGYSFARSYTEGGGALLVY 372
            R + S FG L  C    +  K RP  ++S+        S +  +  A KK  TQT+LD GQ+S GKRTLCG CGLLYVNG+ EDEKDH  FCRS++AGLV  GW+ QRLVWG EG D RVIEVRPGDG   L KM EVKRVMDQEMGFVPL EG   L+ TEKAFLYVH +RVVGC++AEKI  AHPV   +PS+E                      CG +K  +D       D     + + P  ++         S  N  + S+    GK  A      R   K +     S+LP+GV Y LH+  EA +G+KQVWVS+N RR+GIA+ MLEVARARF+YGFVVPR KVAFSQLS AGYSFAR+Y +  G LLVY
Sbjct:    2 RDAMSAFGILKDCFSGRHTKKIRPAYAASSDSRVSSWTSTSKASPHAPKKTLTQTYLDLGQRSHGKRTLCGTCGLLYVNGQEEDEKDHVKFCRSVAAGLVCPGWRDQRLVWGQEGVDGRVIEVRPGDGAAPLTKMREVKRVMDQEMGFVPLREGDIVLKTTEKAFLYVHGRRVVGCVIAEKINVAHPVSGTIPSKEGS------------------HVCGMQKRSRDSRVSGIADSLHGGEGEGPEGRV------PAASGQNEHTDSMQTATGKMAASTGGVLRHADKSR--VGLSMLPQGVEY-LHEKVEAAIGIKQVWVSQNMRRQGIAKRMLEVARARFFYGFVVPRGKVAFSQLSTAGYSFARAYVK-PGKLLVY 352          
The following BLAST results are available for this feature:
BLAST of NO01G03210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29255.17.800e-8350.66Acyl-CoA N-acyltransferase [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03210NO01G03210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03210.1NO01G03210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03210.1.cds1NO01G03210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03210.1.cds2NO01G03210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03210.1 ID=NO01G03210.1|Name=NO01G03210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1375bp
CAAAAAGTTGCAACGGCTCTTCGTCACGACGCGCTACGACCTACTCCTCA
GACACCACAACATCGTATACAGGACAACCAGGGGGACCAAAAACAGCCTT
GGAGCGCCAGGGTCATGCCTAGAGGCTCCTCATCCGTATTTGGCAGTCTC
ACGGGTTGCCTTCGCAACGGCAATAAGGCCAAAAAGCGACCACCCTCTTC
TTCCTCCGCCAGTTTCGCCAACAGAGCCGTCGCTGCCTCCAAGAAAGCTC
CCACCCAAACGTTCTTGGACTTTGGGCAAAAATCCCTAGGGAAGCGCACG
CTCTGTGGCGTGTGCGGCCTCCTGTACGTGAACGGTGAGGCCGAGGACGA
AAAGGATCACGCCTCGTTCTGCCGGAGCATAAGCGCGGGCCTGGTTTTTC
AGGGCTGGAAGGGGCAACGACTGGTGTGGGGCGCCGAGGGCAAGGACAGA
GTGATTGAGGTGCGACCTGGGGACGGGGGTCCGCAGCTGCTCAAGATGGG
AGAGGTGAAGCGAGTCATGGACCAAGAAATGGGTTTTGTGCCTTTGGTAG
AAGGCCAGAGTGCTTTACGGCCTACGGAGAAGGCGTTTTTGTATGTGCAT
GACAAACGGGTGGTGGGGTGTTTGGTCGCAGAAAAGATTGTGGCGGCGCA
TCCAGTGTTGGAGGCCATGCCATCTGAGGAGTGGGAAGGGAGGGAGACGA
CGGCGGAAGAGTTGGTACATGGGGCGAAAGATGGGAGGCTCCAGGAGTGT
GGTGGAAAGAAGGCATGTAAGGATCATGCGGGGGCGGAGAATGACAAGCA
AGAGCAGAAAGATCAAAAGCCACCACCGGCCAAGATGCATCGAGTGGACG
ATAAGGACACCACCAGCAATAGCAACAGCAGCAGCAGCAGCATCGGTCGT
ACAAAAGGAAAAGCACTAGCACCGCCCTCATCGCAGTTCCGACAAGGTAG
AAAGGGGAAGGAGGAAGCGGCCGCCAGCCTTCTCCCTAAGGGTGTCGCCT
ACTCCTTACACGACATGGCAGAGGCCACGTTAGGGGTAAAACAGGTCTGG
GTCAGCAAAAACAGTCGCCGGAAAGGGATAGCGAGACTGATGCTAGAAGT
GGCACGGGCTCGCTTTTACTATGGCTTTGTCGTGCCAAGAGCTAAAGTGG
CATTCTCGCAGTTGAGCAATGCGGGGTATTCGTTTGCAAGGTCGTACACG
GAGGGAGGGGGGGCGCTGCTTGTGTATTAGACACCGGGTAAGGAGACTGT
GTGGGTTTCGATAGTGAGGAACCACTGTTATGCAAGGATTCGCACCGCCT
TAATGTAGATAGTTGATAGTTAACGAGAGGGGTGGTGCACACATGCAAGG
GACGACAAGTCCGCGACAGAAATTT
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protein sequence of NO01G03210.1

>NO01G03210.1-protein ID=NO01G03210.1-protein|Name=NO01G03210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MPRGSSSVFGSLTGCLRNGNKAKKRPPSSSSASFANRAVAASKKAPTQTF
LDFGQKSLGKRTLCGVCGLLYVNGEAEDEKDHASFCRSISAGLVFQGWKG
QRLVWGAEGKDRVIEVRPGDGGPQLLKMGEVKRVMDQEMGFVPLVEGQSA
LRPTEKAFLYVHDKRVVGCLVAEKIVAAHPVLEAMPSEEWEGRETTAEEL
VHGAKDGRLQECGGKKACKDHAGAENDKQEQKDQKPPPAKMHRVDDKDTT
SNSNSSSSSIGRTKGKALAPPSSQFRQGRKGKEEAAASLLPKGVAYSLHD
MAEATLGVKQVWVSKNSRRKGIARLMLEVARARFYYGFVVPRAKVAFSQL
SNAGYSFARSYTEGGGALLVY*
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mRNA from alignment at chr1:844131..845587+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03210.1 ID=NO01G03210.1|Name=NO01G03210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp|location=Sequence derived from alignment at chr1:844131..845587+ (Nannochloropsis oceanica)
CAAAAAGTTGCAACGGCTCTTCGTCACGACGCGCTACGACCTACTCCTCA GACACCACAACATCGTATACAGGACAACCAGGGGGACCAAAAACAGCCTT GGAGCGCCAGGGTCATGCCTAGAGGTAAGTGCCTCAAGAGATTCTCTCCT CATCGGCCTCAATCTCATCACCCTTTCCCTCTTTTCCACCCTCATCCCCT AATCAGGCTCCTCATCCGTATTTGGCAGTCTCACGGGTTGCCTTCGCAAC GGCAATAAGGCCAAAAAGCGACCACCCTCTTCTTCCTCCGCCAGTTTCGC CAACAGAGCCGTCGCTGCCTCCAAGAAAGCTCCCACCCAAACGTTCTTGG ACTTTGGGCAAAAATCCCTAGGGAAGCGCACGCTCTGTGGCGTGTGCGGC CTCCTGTACGTGAACGGTGAGGCCGAGGACGAAAAGGATCACGCCTCGTT CTGCCGGAGCATAAGCGCGGGCCTGGTTTTTCAGGGCTGGAAGGGGCAAC GACTGGTGTGGGGCGCCGAGGGCAAGGACAGAGTGATTGAGGTGCGACCT GGGGACGGGGGTCCGCAGCTGCTCAAGATGGGAGAGGTGAAGCGAGTCAT GGACCAAGAAATGGGTTTTGTGCCTTTGGTAGAAGGCCAGAGTGCTTTAC GGCCTACGGAGAAGGCGTTTTTGTATGTGCATGACAAACGGGTGGTGGGG TGTTTGGTCGCAGAAAAGATTGTGGCGGCGCATCCAGTGTTGGAGGCCAT GCCATCTGAGGAGTGGGAAGGGAGGGAGACGACGGCGGAAGAGTTGGTAC ATGGGGCGAAAGATGGGAGGCTCCAGGAGTGTGGTGGAAAGAAGGCATGT AAGGATCATGCGGGGGCGGAGAATGACAAGCAAGAGCAGAAAGATCAAAA GCCACCACCGGCCAAGATGCATCGAGTGGACGATAAGGACACCACCAGCA ATAGCAACAGCAGCAGCAGCAGCATCGGTCGTACAAAAGGAAAAGCACTA GCACCGCCCTCATCGCAGTTCCGACAAGGTAGAAAGGGGAAGGAGGAAGC GGCCGCCAGCCTTCTCCCTAAGGGTGTCGCCTACTCCTTACACGACATGG CAGAGGCCACGTTAGGGGTAAAACAGGTCTGGGTCAGCAAAAACAGTCGC CGGAAAGGGATAGCGAGACTGATGCTAGAAGTGGCACGGGCTCGCTTTTA CTATGGCTTTGTCGTGCCAAGAGCTAAAGTGGCATTCTCGCAGTTGAGCA ATGCGGGGTATTCGTTTGCAAGGTCGTACACGGAGGGAGGGGGGGCGCTG CTTGTGTATTAGACACCGGGTAAGGAGACTGTGTGGGTTTCGATAGTGAG GAACCACTGTTATGCAAGGATTCGCACCGCCTTAATGTAGATAGTTGATA GTTAACGAGAGGGGTGGTGCACACATGCAAGGGACGACAAGTCCGCGACA GAAATTT
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Coding sequence (CDS) from alignment at chr1:844131..845587+

>NO01G03210.1 ID=NO01G03210.1|Name=NO01G03210.1|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at chr1:844131..845587+ (Nannochloropsis oceanica)
ATGCCTAGAGGCTCCTCATCCGTATTTGGCAGTCTCACGGGTTGCCTTCG
CAACGGCAATAAGGCCAAAAAGCGACCACCCTCTTCTTCCTCCGCCAGTT
TCGCCAACAGAGCCGTCGCTGCCTCCAAGAAAGCTCCCACCCAAACGTTC
TTGGACTTTGGGCAAAAATCCCTAGGGAAGCGCACGCTCTGTGGCGTGTG
CGGCCTCCTGTACGTGAACGGTGAGGCCGAGGACGAAAAGGATCACGCCT
CGTTCTGCCGGAGCATAAGCGCGGGCCTGGTTTTTCAGGGCTGGAAGGGG
CAACGACTGGTGTGGGGCGCCGAGGGCAAGGACAGAGTGATTGAGGTGCG
ACCTGGGGACGGGGGTCCGCAGCTGCTCAAGATGGGAGAGGTGAAGCGAG
TCATGGACCAAGAAATGGGTTTTGTGCCTTTGGTAGAAGGCCAGAGTGCT
TTACGGCCTACGGAGAAGGCGTTTTTGTATGTGCATGACAAACGGGTGGT
GGGGTGTTTGGTCGCAGAAAAGATTGTGGCGGCGCATCCAGTGTTGGAGG
CCATGCCATCTGAGGAGTGGGAAGGGAGGGAGACGACGGCGGAAGAGTTG
GTACATGGGGCGAAAGATGGGAGGCTCCAGGAGTGTGGTGGAAAGAAGGC
ATGTAAGGATCATGCGGGGGCGGAGAATGACAAGCAAGAGCAGAAAGATC
AAAAGCCACCACCGGCCAAGATGCATCGAGTGGACGATAAGGACACCACC
AGCAATAGCAACAGCAGCAGCAGCAGCATCGGTCGTACAAAAGGAAAAGC
ACTAGCACCGCCCTCATCGCAGTTCCGACAAGGTAGAAAGGGGAAGGAGG
AAGCGGCCGCCAGCCTTCTCCCTAAGGGTGTCGCCTACTCCTTACACGAC
ATGGCAGAGGCCACGTTAGGGGTAAAACAGGTCTGGGTCAGCAAAAACAG
TCGCCGGAAAGGGATAGCGAGACTGATGCTAGAAGTGGCACGGGCTCGCT
TTTACTATGGCTTTGTCGTGCCAAGAGCTAAAGTGGCATTCTCGCAGTTG
AGCAATGCGGGGTATTCGTTTGCAAGGTCGTACACGGAGGGAGGGGGGGC
GCTGCTTGTGTATTAG
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Synonyms
Publications