NO01G03190.1, NO01G03190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03190.1
Unique NameNO01G03190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length761
Alignment locationchr1:841127..842213 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:841127..842213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03190.1 vs.
Match: EWM29235.1 (hypothetical protein Naga_100119g1 [Nannochloropsis gaditana])

HSP 1 Score: 92.4 bits (228), Expect = 1.700e-15
Identity = 56/126 (44.44%), Postives = 87/126 (69.05%), Query Frame = 0 
Query:    1 MGNLNQSLRDRYMASFDNVVEDMSIAQKLEVYQGLQQQASLLTQMEGQIMKSLESSAIEEASLREREDFLERRRLAYMKRIDPFS------HPEEDDDDNDDEKVEEYECEKLNEDENRSLQLQSV 121
            MGN++QSLR+RY  +F++ V++MSIAQK E+++ LQ QA LL Q+E +I++ L   + EEA+LR RE+FLE RR AY+KR+D  S        EE++++ ++E+ EE E E+  E+E    + + V
Sbjct:    1 MGNVSQSLRERYRTTFEDAVDEMSIAQKKEMHRDLQHQALLLLQLESEILRILRKLSEEEANLRRREEFLELRRRAYVKRLDTASVEEQKKKREEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEV 126
The following BLAST results are available for this feature:
BLAST of NO01G03190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29235.11.700e-1544.44hypothetical protein Naga_100119g1 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03190NO01G03190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03190.1NO01G03190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03190.1.cds1NO01G03190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03190.1.cds2NO01G03190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03190.1.cds3NO01G03190.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03190.1.cds4NO01G03190.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03190.1 ID=NO01G03190.1|Name=NO01G03190.1|organism=Nannochloropsis oceanica|type=mRNA|length=761bp
AAACATGACAAGTACCTCGCAGGCAGCCAGAAGATAGCTGTGGGTGTGGC
GGCCAATGGGGAATCTGAATCAGAGCTTGCGGGATAGGTACATGGCTAGC
TTTGACAACGTAGTGGAGGACATGTCCATTGCCCAGAAGTTGGAGGTGTA
CCAGGGGCTGCAGCAACAGGCCTCGTTGCTGACTCAGATGGAGGGTCAGA
TCATGAAGTCGCTTGAATCCTCTGCCATTGAAGAAGCCAGCCTTCGTGAA
CGCGAGGACTTTTTAGAACGGCGCCGTCTAGCCTACATGAAGCGCATCGA
TCCCTTCTCCCACCCCGAGGAGGACGACGATGACAACGACGACGAGAAAG
TAGAGGAGTACGAATGCGAAAAGTTAAATGAAGATGAGAACCGAAGCCTA
CAGCTTCAGTCCGTGGTGTCTATCGCCGTGCTAGACGGGCCGAGCGAGCA
GAAGAAGAAAGAAATTAAAACTTTCCTCGAGCAAGAGCTCCCAGAGATCC
AGAAAAATGTGGCGGTACGCGCACGGATGCTGTGGTTCAAGCAGAAGGAG
TACGAAGATAAGCTGGTAAAGACGCGGAATAAACTGATGGAGGTAAATGG
TTTGATTGCTGATATGGAGCCTGGTCTTCCGCCCATGAGCTTGACCCCAG
AGACGGGAATAACTCTTCTTCCAAGCATGTAAAAACATATTTGACAAGTG
TGCGTCTCAAGACGGCGCATGCGAAAAAAGGAAGAAATGCCAGACTGAGA
AGTTGTAAATG
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protein sequence of NO01G03190.1

>NO01G03190.1-protein ID=NO01G03190.1-protein|Name=NO01G03190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MGNLNQSLRDRYMASFDNVVEDMSIAQKLEVYQGLQQQASLLTQMEGQIM
KSLESSAIEEASLREREDFLERRRLAYMKRIDPFSHPEEDDDDNDDEKVE
EYECEKLNEDENRSLQLQSVVSIAVLDGPSEQKKKEIKTFLEQELPEIQK
NVAVRARMLWFKQKEYEDKLVKTRNKLMEVNGLIADMEPGLPPMSLTPET
GITLLPSM*
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mRNA from alignment at chr1:841127..842213+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03190.1 ID=NO01G03190.1|Name=NO01G03190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1087bp|location=Sequence derived from alignment at chr1:841127..842213+ (Nannochloropsis oceanica)
AAACATGACAAGTACCTCGCAGGCAGCCAGAAGATAGCTGTGGGTGTGGC
GGCCAATGGGGAATCTGAATCAGAGCTTGCGGGATAGGTAAGAAAAAGGT
GGAGGACTGAGGCCTGTGATCATCAAACCCACCCTACTCTTCCTTCCCTC
GCACTTACGGTATGGCGGTCAGGTACATGGCTAGCTTTGACAACGTAGTG
GAGGACATGTCCATTGCCCAGAAGTTGGAGGTGTACCAGGGGCTGCAGCA
ACAGGTGAGCACGAACACCCGACTCCTGACTACCCCCCTTATCCTCCATC
CCTACGCGTCTCAATCCTCCTTTTCATGTTTTTATCATCTAGGCCTCGTT
GCTGACTCAGATGGAGGGTCAGATCATGAAGTCGCTTGAATCCTCTGCCA
TTGAAGAAGCCAGCCTTCGTGAACGCGAGGTAGGATAGGTGGAGAGATCG
CAGGGCGAAGAACCGAAAGGACAGGAAATGTAAATTTGTCCATGTCTCCT
TTTTCTCTCCATTTCCATCAGCCTTGACCTTGTATCCCACGCTAATGGCG
CATTTGGATCCACACCATTCTCATACGCTCAGGACTTTTTAGAACGGCGC
CGTCTAGCCTACATGAAGCGCATCGATCCCTTCTCCCACCCCGAGGAGGA
CGACGATGACAACGACGACGAGAAAGTAGAGGAGTACGAATGCGAAAAGT
TAAATGAAGATGAGAACCGAAGCCTACAGCTTCAGTCCGTGGTGTCTATC
GCCGTGCTAGACGGGCCGAGCGAGCAGAAGAAGAAAGAAATTAAAACTTT
CCTCGAGCAAGAGCTCCCAGAGATCCAGAAAAATGTGGCGGTACGCGCAC
GGATGCTGTGGTTCAAGCAGAAGGAGTACGAAGATAAGCTGGTAAAGACG
CGGAATAAACTGATGGAGGTAAATGGTTTGATTGCTGATATGGAGCCTGG
TCTTCCGCCCATGAGCTTGACCCCAGAGACGGGAATAACTCTTCTTCCAA
GCATGTAAAAACATATTTGACAAGTGTGCGTCTCAAGACGGCGCATGCGA
AAAAAGGAAGAAATGCCAGACTGAGAAGTTGTAAATG
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Coding sequence (CDS) from alignment at chr1:841127..842213+

>NO01G03190.1 ID=NO01G03190.1|Name=NO01G03190.1|organism=Nannochloropsis oceanica|type=CDS|length=627bp|location=Sequence derived from alignment at chr1:841127..842213+ (Nannochloropsis oceanica)
ATGGGGAATCTGAATCAGAGCTTGCGGGATAGGTACATGGCTAGCTTTGA
CAACGTAGTGGAGGACATGTCCATTGCCCAGAAGTTGGAGGTGTACCAGG
GGCTGCAGCAACAGGCCTCGTTGCTGACTCAGATGGAGGGTCAGATCATG
AAGTCGCTTGAATCCTCTGCCATTGAAGAAGCCAGCCTTCGTGAACGCGA
GGACTTTTTAGAACGGCGCCGTCTAGCCTACATGAAGCGCATCGATCCCT
TCTCCCACCCCGAGGAGGACGACGATGACAACGACGACGAGAAAGTAGAG
GAGTACGAATGCGAAAAGTTAAATGAAGATGAGAACCGAAGCCTACAGCT
TCAGTCCGTGGTGTCTATCGCCGTGCTAGACGGGCCGAGCGAGCAGAAGA
AGAAAGAAATTAAAACTTTCCTCGAGCAAGAGCTCCCAGAGATCCAGAAA
AATGTGGCGGTACGCGCACGGATGCTGTGGTTCAAGCAGAAGGAGTACGA
AGATAAGCTGGTAAAGACGCGGAATAAACTGATGGAGGTAAATGGTTTGA
TTGCTGATATGGAGCCTGGTCTTCCGCCCATGAGCTTGACCCCAGAGACG
GGAATAACTCTTCTTCCAAGCATGTAA
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Synonyms
Publications