NO01G03170.1, NO01G03170.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03170.1
Unique NameNO01G03170.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1783
Alignment locationchr1:836249..838318 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:836249..838318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03170.1 vs.
Match: XP_005853760.1 (hypothetical protein NGA_0477710 [Nannochloropsis gaditana CCMP526]; EKU22601.1 hypothetical protein NGA_0477710 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 719.5 bits (1856), Expect = 5.700e-204
Identity = 355/382 (92.93%), Postives = 370/382 (96.86%), Query Frame = 0 
Query:   26 LNSIPLKTRARHAALNMVSRAEKENPYMEELKANAKKIGGRGRGILASDESNATTGIRLGSIGVENTEENRRKWRELLYTAPGLGEYISGAIMFDETLYQKTSEGKPFVDVLREQNILPGIKVDTGLQNMFGTDGETATQGLDGLGDRCKAYYKQGARFAKWRAVLKCDEKDLPSEKAIWENAHALARYAAIAQENGLVPIVEPEVTLGPGTYSIERTAFISERVNSITMNWLNRYDVVLDAILLKPNMILPGLDAPMASKEEVAKYTVQVMKRTIPPAVPSIHFLSGGMGEEEATLNLQQLQKEYPDAPWSLTFSYGRALQSSTLKTWGGKPENWKAAQDILVKLAQANSRAQLGKFVEGTHPAPGGGRILQALRLGGAGK 408
            LN+ P+KTR R AAL MVSRAEKENPYMEELKANA+KIGGRGRGILASDESNATTG RL ++GVENTEENRRKWRELLYTAPGLG+YISGAIMFDETLYQKT+EGKPFVDVL EQNI+PGIKVDTGLQNMFGTDGETATQGLDGLGDRCKAYYKQGARFAKWRAVLK D++DLPSEKAIWENAHALARYAAIAQENGLVPIVEPEVTLGPG YSIERTAFISERVNSI MNWLNRYDVVLDAILLKPNMILPGLDAP+ASKEEVAKYTVQVMKR+IPPAVPSIHFLSGGMGEEEATLNLQQLQKEYPDAPWSLTFSYGRALQSSTLKTW GK ENWKAAQDILVKLAQANS+AQLG+FVEGTHP+PGGGRILQALRLGGAGK
Sbjct:  522 LNATPIKTRGRFAALKMVSRAEKENPYMEELKANARKIGGRGRGILASDESNATTGKRLEAVGVENTEENRRKWRELLYTAPGLGQYISGAIMFDETLYQKTAEGKPFVDVLAEQNIIPGIKVDTGLQNMFGTDGETATQGLDGLGDRCKAYYKQGARFAKWRAVLKVDDRDLPSEKAIWENAHALARYAAIAQENGLVPIVEPEVTLGPGAYSIERTAFISERVNSIVMNWLNRYDVVLDAILLKPNMILPGLDAPIASKEEVAKYTVQVMKRSIPPAVPSIHFLSGGMGEEEATLNLQQLQKEYPDAPWSLTFSYGRALQSSTLKTWSGKQENWKAAQDILVKLAQANSQAQLGQFVEGTHPSPGGGRILQALRLGGAGK 903
The following BLAST results are available for this feature:
BLAST of NO01G03170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853760.15.700e-20492.93hypothetical protein NGA_0477710 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03170NO01G03170Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03170.1NO01G03170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03170.1.cds1NO01G03170.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03170.1.cds2NO01G03170.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03170.1.cds3NO01G03170.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03170.1 ID=NO01G03170.1|Name=NO01G03170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1783bp
ATGAGAGTGATTCAACACGCACCCTCACTTGCCGCACCATCGGGCTCCGA
CAAGGTCGCAATCCAATGCACGCGACGCTTTGTGCTTAACCATGGAAGGC
TACTCTTTACTCTTCGTGCCAGTCTTTAAGTACTACAGTGCTGAATATGC
CACTCAAGGGTCCCTCTCTCGTTTTACTTTCGGCAACGTTGCCGTTGTAC
CCGATCCGATTCACCTTCACTCACCACTCTCCGCCGCTCTCTTTCCACCA
CGAACATATGCACACACAATACACAGCGTATAGCCATGAAGGTCTTGTCT
TCTTTAATTCTGACCTCCGTGGTCGTCTCCTGCTCCGCTTTTGTCTCCCT
GAACCCCAAGCTCAACAGCATCCCCCTCAAGACCCGCGCTCGTCATGCGG
CCTTGAACATGGTCAGCCGTGCGGAGAAGGAGAACCCATATATGGAGGAG
CTAAAGGCCAATGCCAAGAAGATCGGGGGGCGAGGCCGAGGTATTCTGGC
CAGTGACGAGAGTAACGCCACTACGGGCATCCGTTTGGGGTCCATTGGCG
TGGAGAACACGGAAGAGAATCGCCGCAAGTGGCGTGAGCTTTTGTACACG
GCCCCCGGTTTGGGTGAATATATTTCGGGGGCAATCATGTTTGACGAGAC
ACTCTACCAAAAAACCTCGGAGGGCAAGCCGTTCGTGGACGTGCTCCGCG
AGCAGAACATCCTTCCGGGCATCAAGGTAGATACGGGCCTGCAAAATATG
TTTGGCACGGATGGGGAGACGGCGACGCAGGGATTAGATGGTCTTGGTGA
TCGATGCAAGGCCTACTACAAGCAGGGCGCTCGTTTCGCCAAGTGGCGTG
CCGTCCTCAAGTGCGACGAGAAGGACTTACCCAGCGAGAAGGCCATCTGG
GAGAATGCCCATGCCTTGGCCAGGTACGCCGCCATCGCACAAGAAAACGG
CCTGGTCCCCATTGTCGAGCCCGAGGTCACCTTGGGCCCCGGCACTTACT
CCATTGAGCGCACTGCCTTTATCTCCGAGCGTGTCAACTCCATCACCATG
AACTGGCTCAACCGTTACGACGTGGTCTTGGATGCGATCCTTCTGAAACC
GAACATGATTCTGCCTGGTCTTGATGCCCCGATGGCAAGCAAGGAGGAAG
TTGCAAAGTACACCGTGCAGGTAATGAAGCGCACCATTCCCCCCGCCGTC
CCCTCCATCCATTTCCTCTCCGGAGGCATGGGCGAGGAAGAGGCCACCCT
GAATCTGCAGCAACTGCAGAAGGAGTACCCTGACGCGCCTTGGAGCTTGA
CCTTTTCCTATGGCCGTGCTTTGCAGTCAAGCACGCTCAAGACCTGGGGT
GGAAAGCCGGAGAACTGGAAGGCGGCACAGGATATTCTTGTGAAGCTCGC
GCAGGCCAACAGCCGGGCTCAGCTTGGAAAGTTTGTCGAGGGGACTCACC
CTGCCCCTGGTGGGGGGCGTATTCTGCAGGCCCTACGTTTGGGAGGGGCA
GGGAAGTAAGTGGTGAATGACGGTGAGTTCGAAGTAAGGAGGGAGATTAG
AGAGTTCATGTGCGTGACGAATGGTGTGGGTCATCAATACAATCAAAACA
TGAGCGGAGAAGAAGAGTCAAGGATATGTAGTGCACTTTTACGAAACAGC
AGCGGCAGGAGTGGCAGCAGTAGCAGCAGTAATAGTCACCTTGAACCGGT
CCCGACGAGTGAGTAGAGTGGGAGCGTCCGTAAGAAGCAAACAAAAAGAA
AAAAGGCAAGGGAAGAAATGACCAGCAAACGAG
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protein sequence of NO01G03170.1

>NO01G03170.1-protein ID=NO01G03170.1-protein|Name=NO01G03170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MKVLSSLILTSVVVSCSAFVSLNPKLNSIPLKTRARHAALNMVSRAEKEN
PYMEELKANAKKIGGRGRGILASDESNATTGIRLGSIGVENTEENRRKWR
ELLYTAPGLGEYISGAIMFDETLYQKTSEGKPFVDVLREQNILPGIKVDT
GLQNMFGTDGETATQGLDGLGDRCKAYYKQGARFAKWRAVLKCDEKDLPS
EKAIWENAHALARYAAIAQENGLVPIVEPEVTLGPGTYSIERTAFISERV
NSITMNWLNRYDVVLDAILLKPNMILPGLDAPMASKEEVAKYTVQVMKRT
IPPAVPSIHFLSGGMGEEEATLNLQQLQKEYPDAPWSLTFSYGRALQSST
LKTWGGKPENWKAAQDILVKLAQANSRAQLGKFVEGTHPAPGGGRILQAL
RLGGAGK*
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mRNA from alignment at chr1:836249..838318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03170.1 ID=NO01G03170.1|Name=NO01G03170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2070bp|location=Sequence derived from alignment at chr1:836249..838318- (Nannochloropsis oceanica)
ATGAGAGTGATTCAACACGCACCCTCACTTGCCGCACCATCGGGCTCCGA
CAAGGTCGCAATCCAATGCACGCGACGCTTTGTGCTTAACCATGGAAGGC
TACTCTTTACTCTTCGTGCCAGTCTTTAAGTACTACAGTGCTGAATATGC
CACTCAAGGGTCCCTCTCTCGTTTTACTTTCGGCAACGTTGCCGTTGTAC
CCGATCCGATTCACCTTCACTCACCACTCTCCGCCGCTCTCTTTCCACCA
CGAACATATGCACACACAATACACAGCGTATAGCCATGAAGGTCTTGTCT
TCTTTAATTCTGACCTCCGTGGTCGTCTCCTGCTCCGCTTTTGTCTCCCT
GAACCCCAAGGTACGTCGCTACACTCACTCTCTCTGTGCTCCCTCCATCT
TGCCCTGCTAACGCCGCAGCCTTCCTTCGTGCCCACACCGTCTGCTTTCC
ACCGAAGCTCAACAGCATCCCCCTCAAGACCCGCGCTCGTCATGCGGCCT
TGAACATGGTCAGCCGTGCGGAGAAGGAGAACCCATATATGGAGGAGCTA
AAGGCCAATGCCAAGAAGATCGGGGGGCGAGGCCGAGGTATTCTGGCCAG
TGACGAGAGTAACGCCACTACGGGCATCCGTTTGGGGTCCATTGGCGTGG
AGAACACGGAAGAGAATCGCCGCAAGTGGCGTGAGCTTTTGTACACGGCC
CCCGGTTTGGGTGAATATATTTCGGGGGCAATCATGTTTGACGAGACACT
CTACCAAAAAACCTCGGAGGGCAAGCCGTTCGTGGACGTGCTCCGCGAGC
AGAACATCCTTCCGGGCATCAAGGTAGATACGGGCCTGCAAAATATGTTT
GGCACGGATGGGGAGACGGCGACGCAGGGATTAGATGGTCTTGGTGATCG
ATGCAAGGCCTACTACAAGCAGGGCGCTCGTTTCGGTACGTCAAGTAAAG
AGGGTAAACTGAAAGGTTGAGCTCATGGTGGTGAAAAAGCTTCTGATCTG
GTAGAACAATCATCATTGTCGTGATTTCTAGATGCCCTTTATGTGCTCTG
AACACGCGTGCCTGTTACTCTTTTCTCGCCCAACACACCTCTTCTCTCCA
ACCTCCAACCACCAAAACCAAACAGCCAAGTGGCGTGCCGTCCTCAAGTG
CGACGAGAAGGACTTACCCAGCGAGAAGGCCATCTGGGAGAATGCCCATG
CCTTGGCCAGGTACGCCGCCATCGCACAAGAAAACGGCCTGGTCCCCATT
GTCGAGCCCGAGGTCACCTTGGGCCCCGGCACTTACTCCATTGAGCGCAC
TGCCTTTATCTCCGAGCGTGTCAACTCCATCACCATGAACTGGCTCAACC
GTTACGACGTGGTCTTGGATGCGATCCTTCTGAAACCGAACATGATTCTG
CCTGGTCTTGATGCCCCGATGGCAAGCAAGGAGGAAGTTGCAAAGTACAC
CGTGCAGGTAATGAAGCGCACCATTCCCCCCGCCGTCCCCTCCATCCATT
TCCTCTCCGGAGGCATGGGCGAGGAAGAGGCCACCCTGAATCTGCAGCAA
CTGCAGAAGGAGTACCCTGACGCGCCTTGGAGCTTGACCTTTTCCTATGG
CCGTGCTTTGCAGTCAAGCACGCTCAAGACCTGGGGTGGAAAGCCGGAGA
ACTGGAAGGCGGCACAGGATATTCTTGTGAAGCTCGCGCAGGCCAACAGC
CGGGCTCAGCTTGGAAAGTTTGTCGAGGGGACTCACCCTGCCCCTGGTGG
GGGGCGTATTCTGCAGGCCCTACGTTTGGGAGGGGCAGGGAAGTAAGTGG
TGAATGACGGTGAGTTCGAAGTAAGGAGGGAGATTAGAGAGTTCATGTGC
GTGACGAATGGTGTGGGTCATCAATACAATCAAAACATGAGCGGAGAAGA
AGAGTCAAGGATATGTAGTGCACTTTTACGAAACAGCAGCGGCAGGAGTG
GCAGCAGTAGCAGCAGTAATAGTCACCTTGAACCGGTCCCGACGAGTGAG
TAGAGTGGGAGCGTCCGTAAGAAGCAAACAAAAAGAAAAAAGGCAAGGGA
AGAAATGACCAGCAAACGAG
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Coding sequence (CDS) from alignment at chr1:836249..838318-

>NO01G03170.1 ID=NO01G03170.1|Name=NO01G03170.1|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at chr1:836249..838318- (Nannochloropsis oceanica)
ATGAAGGTCTTGTCTTCTTTAATTCTGACCTCCGTGGTCGTCTCCTGCTC
CGCTTTTGTCTCCCTGAACCCCAAGCTCAACAGCATCCCCCTCAAGACCC
GCGCTCGTCATGCGGCCTTGAACATGGTCAGCCGTGCGGAGAAGGAGAAC
CCATATATGGAGGAGCTAAAGGCCAATGCCAAGAAGATCGGGGGGCGAGG
CCGAGGTATTCTGGCCAGTGACGAGAGTAACGCCACTACGGGCATCCGTT
TGGGGTCCATTGGCGTGGAGAACACGGAAGAGAATCGCCGCAAGTGGCGT
GAGCTTTTGTACACGGCCCCCGGTTTGGGTGAATATATTTCGGGGGCAAT
CATGTTTGACGAGACACTCTACCAAAAAACCTCGGAGGGCAAGCCGTTCG
TGGACGTGCTCCGCGAGCAGAACATCCTTCCGGGCATCAAGGTAGATACG
GGCCTGCAAAATATGTTTGGCACGGATGGGGAGACGGCGACGCAGGGATT
AGATGGTCTTGGTGATCGATGCAAGGCCTACTACAAGCAGGGCGCTCGTT
TCGCCAAGTGGCGTGCCGTCCTCAAGTGCGACGAGAAGGACTTACCCAGC
GAGAAGGCCATCTGGGAGAATGCCCATGCCTTGGCCAGGTACGCCGCCAT
CGCACAAGAAAACGGCCTGGTCCCCATTGTCGAGCCCGAGGTCACCTTGG
GCCCCGGCACTTACTCCATTGAGCGCACTGCCTTTATCTCCGAGCGTGTC
AACTCCATCACCATGAACTGGCTCAACCGTTACGACGTGGTCTTGGATGC
GATCCTTCTGAAACCGAACATGATTCTGCCTGGTCTTGATGCCCCGATGG
CAAGCAAGGAGGAAGTTGCAAAGTACACCGTGCAGGTAATGAAGCGCACC
ATTCCCCCCGCCGTCCCCTCCATCCATTTCCTCTCCGGAGGCATGGGCGA
GGAAGAGGCCACCCTGAATCTGCAGCAACTGCAGAAGGAGTACCCTGACG
CGCCTTGGAGCTTGACCTTTTCCTATGGCCGTGCTTTGCAGTCAAGCACG
CTCAAGACCTGGGGTGGAAAGCCGGAGAACTGGAAGGCGGCACAGGATAT
TCTTGTGAAGCTCGCGCAGGCCAACAGCCGGGCTCAGCTTGGAAAGTTTG
TCGAGGGGACTCACCCTGCCCCTGGTGGGGGGCGTATTCTGCAGGCCCTA
CGTTTGGGAGGGGCAGGGAAGTAA
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Synonyms
Publications