NO01G03140.1, NO01G03140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03140.1
Unique NameNO01G03140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1294
Alignment locationchr1:827833..829749 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:827833..829749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G03140.1 vs.
Match: XP_005853759.1 (aquaporin sip1-2 [Nannochloropsis gaditana CCMP526]; EKU22600.1 aquaporin sip1-2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 401.4 bits (1030), Expect = 1.900e-108
Identity = 203/226 (89.82%), Postives = 216/226 (95.58%), Query Frame = 0
Query:    4 VESPRQLVGAAIQEFFGALLMFLILWPFVGVFGNTWTAWLAHFFFVMLCDVVSGGSQVNPSVSVAMFVHGAISFPGAIVRILAQLAAGIIAYPLLQKLSPSYVGVGGPGLQDGISTTTGALAEFTLTFGLLTLIYLAITIVGAPGQRPVIAAGIRGLVVAGGSYTGPAMNPMIAFGWAVQSGAYKNFDHYLVYWIAPTVGAVLATVLFAVFQASFLDDGEKKSKSD 230
            VESPRQLVGAAIQEFFGALLMFL+LWPFVGV G+TWTAW+AHFFFVMLCD+VSGGSQVNPSVSVAMFVHGAISFPGAIVRILAQLAAG++AYPLLQKLSPSYVGVGGP LQDG+STTTGALAEFTLTF LLTLIYLAITI+GAPGQRP+IAAGIR L+VAG  YTGPAMNPMIAFGWAVQS AYK FDHYLVYWIAPTVGAVLATVLFAVFQASFLD+  KK+K+D
Sbjct:    6 VESPRQLVGAAIQEFFGALLMFLVLWPFVGVLGDTWTAWVAHFFFVMLCDIVSGGSQVNPSVSVAMFVHGAISFPGAIVRILAQLAAGVVAYPLLQKLSPSYVGVGGPCLQDGVSTTTGALAEFTLTFALLTLIYLAITIIGAPGQRPIIAAGIRCLIVAGTPYTGPAMNPMIAFGWAVQSDAYKTFDHYLVYWIAPTVGAVLATVLFAVFQASFLDE-RKKNKAD 230          
The following BLAST results are available for this feature:
BLAST of NO01G03140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853759.11.900e-10889.82aquaporin sip1-2 [Nannochloropsis gaditana CCMP526... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03140NO01G03140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03140.1NO01G03140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03140.1.cds1NO01G03140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03140.1.cds2NO01G03140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03140.1.cds3NO01G03140.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03140.1.cds4NO01G03140.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03140.1 ID=NO01G03140.1|Name=NO01G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1294bp
CACATAAGATACGATTGTAACGAGCATTTTGGGACCCCACCACGGACCCA
CTCCTGCACTTATTCTAACCAAAATTACGCGATACAAATAGTAAGCCTGC
CTGGATGTGTTTCTAATGGTAGTGACAGCGATGACGGGGACGCCCAAGCA
AGACACCCGCTAATTGCGTAGACCTCCGAGTCCCCATCCTGGTTCTACTT
CATCTTCCACTTCATCAACCCTCGTGACAATTTACGAGATGACGCCAAAC
AAACACGCATATAATATACCAATGCCGCCACTTGCGCTGGATCATCCTCT
TGTCTGATTCTCCCCCCTTCAGACTCCTCAACTTACATCCTCTTCCTGCA
ACCCTTACCCTGCATCCCAGACAGCGCAAAGCACTTCAACATTCCGACAA
TGGGCGCGGTAGAATCCCCCCGCCAACTGGTGGGAGCGGCCATTCAAGAG
TTTTTCGGTGCCCTACTGATGTTTCTGATCCTCTGGCCGTTTGTGGGCGT
CTTTGGCAACACATGGACGGCCTGGCTGGCCCACTTCTTCTTCGTCATGC
TGTGCGACGTCGTCTCCGGTGGCTCCCAAGTCAACCCCAGTGTTTCCGTC
GCCATGTTCGTGCACGGAGCTATATCATTCCCTGGGGCCATCGTGCGTAT
CCTTGCCCAGCTTGCTGCGGGCATAATTGCCTATCCTTTGCTTCAAAAGC
TGAGCCCGAGCTACGTCGGTGTGGGGGGACCAGGCCTCCAAGATGGGATC
AGCACGACTACGGGGGCACTGGCCGAATTTACATTAACGTTTGGATTGTT
GACATTGATTTATTTGGCCATCACAATTGTTGGCGCGCCAGGGCAGCGCC
CCGTCATTGCGGCGGGCATCCGCGGCTTGGTAGTGGCAGGCGGATCTTAC
ACAGGACCAGCAATGAACCCCATGATTGCGTTTGGGTGGGCCGTGCAGAG
CGGGGCCTACAAGAATTTCGACCACTACCTGGTTTATTGGATTGCCCCGA
CCGTGGGCGCCGTTTTGGCCACGGTACTGTTCGCCGTCTTCCAAGCGTCC
TTCCTGGACGACGGGGAGAAGAAGAGCAAAAGCGACTGAAGATGAACAGG
ATACAGAGGTAAAAAGAGGGAAGACGGTGATGAGTAGTCAGGCGCTGAAA
CAAGGCGTGGAAGAGGCAAAGCAAAAGGAAAGGAGGGAATAAGGCAGGCT
GGAGCGACACCCTCAAGACAACAGCCAGAAAACTACATACACCTATCTGA
AAAGAGGGGTTAAAAGATAGAAACAAGAAAGAAAAAGGGACTCA
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protein sequence of NO01G03140.1

>NO01G03140.1-protein ID=NO01G03140.1-protein|Name=NO01G03140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MGAVESPRQLVGAAIQEFFGALLMFLILWPFVGVFGNTWTAWLAHFFFVM
LCDVVSGGSQVNPSVSVAMFVHGAISFPGAIVRILAQLAAGIIAYPLLQK
LSPSYVGVGGPGLQDGISTTTGALAEFTLTFGLLTLIYLAITIVGAPGQR
PVIAAGIRGLVVAGGSYTGPAMNPMIAFGWAVQSGAYKNFDHYLVYWIAP
TVGAVLATVLFAVFQASFLDDGEKKSKSD*
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mRNA from alignment at chr1:827833..829749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03140.1 ID=NO01G03140.1|Name=NO01G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1917bp|location=Sequence derived from alignment at chr1:827833..829749- (Nannochloropsis oceanica)
CACATAAGATACGATTGTAACGAGCATTTTGGGACCCCACCACGGACCCA CTCCTGCACTTATTCTAACCAAAATTACGCGATACAAATAGTAAGCCTGC CTGGATGTGTTTCTAATGGTAGTGACAGCGATGACGGGGACGCCCAAGCA AGACACCCGCTAATTGCGTAGACCTCCGAGTCCCCATCCTGGTTCTACTT CATCTTCCACTTCATCAACCCTCGTGACAATTTACGAGATGACGCCAAAC AAACACGCATATAATATACCAATGCCGCCACTTGCGCTGGATCATCCTCT TGTCTGATTCTCCCCCCTTCAGACTCCTCAACTTACATCCTCTTCCTGCA ACCCTTACCCTGCATCCCAGACAGCGCAAAGCACTTCAACATTCCGACAA TGGGCGCGGTAGAATCCCCCCGCCAACTGGTGGGAGCGGCCATTCAAGAG TTTTTCGGTGCCCTACTGATGTTTCTGATCCTCTGGCCGTTTGTGGGCGT CTTTGGCAACACATGGACGGCCTGGCTGGCCCACTTCTTCTTCGTCATGC TGGTGAGGCAGGGAAGAGGAGGGTGGGATGTTGAGGGTGGAATGGGTGAA GAGGGAAAGAGGAGGAGAGTAGTCTAGTGCAATGAGTGATCTTGATGGGA TGGGACGAATCACATGTCTTGGATTTGTCTTGCGCGGCGTGTAAGAATTG CCCACTTCTTACGCGATGCCCACCCGTCCCACCAACACCGACTAGTGCGA CGTCGTCTCCGGTGGCTCCCAAGTCAACCCCAGTGTTTCCGTCGCCATGT TCGTGCACGGAGCTATATCATTCCCTGGGGCCATCGTGCGTATCCTTGCC CAGCTTGCTGCGGGCATAATTGCCTATCCTTTGCTTCAAAAGCTGAGCCC GAGCTACGTCGGTGTGGGGGGACCAGGCCTCCAAGATGGGATCAGCACGA CTACGGGGGCACTGGCCGAATTTACATTAACGTTTGGATTGTTGACATTG ATTTATTTGGCCATCACAATTGTTGGCGCGCCAGGGCAGGTGGGTGATGG TGGCGGTCGGTCGGTGTGGTGGTTTGGGAGAGGAATGGAAGGCGTAGGAG TGACGGAAGAAAGGTGCTGGTATATGGTCCATGGTTTGAGAAAGAAACGA GAAAGAGAGAAAGAAAAACAATCTGCTCCTATACAACGGGAGCGGTTCAC CGAAACGTTAAGTTTATGTGCAGATCTTCAGGAACAGTTTTGATCCTACC TTTCTCACGACACGAACGCATGCATACACACACATGAACAAAAACACAGC GCCCCGTCATTGCGGCGGGCATCCGCGGCTTGGTAGTGGCAGGCGGATCT TACACAGGACCAGCAATGAACCCCATGATTGCGTTTGGGTGGGCCGTGCA GAGCGGGGCCTACAAGGTATGGGCTTGTGACTCCTCATGTGCTGCTTTTT GTGGCAGTGACGATTTTTCAACAGTTTTTATGCATGTCACACTACCCCCC TACTCCTTCCGGTCTTATTTGTATGTTTGTATGGTTACTCACATTCTTCG CAAATTTTGCCTTCTTTTTTTTTTCTTTGCACTCAGAATTTCGACCACTA CCTGGTTTATTGGATTGCCCCGACCGTGGGCGCCGTTTTGGCCACGGTAC TGTTCGCCGTCTTCCAAGCGTCCTTCCTGGACGACGGGGAGAAGAAGAGC AAAAGCGACTGAAGATGAACAGGATACAGAGGTAAAAAGAGGGAAGACGG TGATGAGTAGTCAGGCGCTGAAACAAGGCGTGGAAGAGGCAAAGCAAAAG GAAAGGAGGGAATAAGGCAGGCTGGAGCGACACCCTCAAGACAACAGCCA GAAAACTACATACACCTATCTGAAAAGAGGGGTTAAAAGATAGAAACAAG AAAGAAAAAGGGACTCA
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Coding sequence (CDS) from alignment at chr1:827833..829749-

>NO01G03140.1 ID=NO01G03140.1|Name=NO01G03140.1|organism=Nannochloropsis oceanica|type=CDS|length=690bp|location=Sequence derived from alignment at chr1:827833..829749- (Nannochloropsis oceanica)
ATGGGCGCGGTAGAATCCCCCCGCCAACTGGTGGGAGCGGCCATTCAAGA
GTTTTTCGGTGCCCTACTGATGTTTCTGATCCTCTGGCCGTTTGTGGGCG
TCTTTGGCAACACATGGACGGCCTGGCTGGCCCACTTCTTCTTCGTCATG
CTGTGCGACGTCGTCTCCGGTGGCTCCCAAGTCAACCCCAGTGTTTCCGT
CGCCATGTTCGTGCACGGAGCTATATCATTCCCTGGGGCCATCGTGCGTA
TCCTTGCCCAGCTTGCTGCGGGCATAATTGCCTATCCTTTGCTTCAAAAG
CTGAGCCCGAGCTACGTCGGTGTGGGGGGACCAGGCCTCCAAGATGGGAT
CAGCACGACTACGGGGGCACTGGCCGAATTTACATTAACGTTTGGATTGT
TGACATTGATTTATTTGGCCATCACAATTGTTGGCGCGCCAGGGCAGCGC
CCCGTCATTGCGGCGGGCATCCGCGGCTTGGTAGTGGCAGGCGGATCTTA
CACAGGACCAGCAATGAACCCCATGATTGCGTTTGGGTGGGCCGTGCAGA
GCGGGGCCTACAAGAATTTCGACCACTACCTGGTTTATTGGATTGCCCCG
ACCGTGGGCGCCGTTTTGGCCACGGTACTGTTCGCCGTCTTCCAAGCGTC
CTTCCTGGACGACGGGGAGAAGAAGAGCAAAAGCGACTGA
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Synonyms
Publications