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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:827833..829749 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03140.1 vs.
Match: XP_005853759.1 (aquaporin sip1-2 [Nannochloropsis gaditana CCMP526]; EKU22600.1 aquaporin sip1-2 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 401.4 bits (1030), Expect = 1.900e-108 Identity = 203/226 (89.82%), Postives = 216/226 (95.58%), Query Frame = 0
Query: 4 VESPRQLVGAAIQEFFGALLMFLILWPFVGVFGNTWTAWLAHFFFVMLCDVVSGGSQVNPSVSVAMFVHGAISFPGAIVRILAQLAAGIIAYPLLQKLSPSYVGVGGPGLQDGISTTTGALAEFTLTFGLLTLIYLAITIVGAPGQRPVIAAGIRGLVVAGGSYTGPAMNPMIAFGWAVQSGAYKNFDHYLVYWIAPTVGAVLATVLFAVFQASFLDDGEKKSKSD 230
VESPRQLVGAAIQEFFGALLMFL+LWPFVGV G+TWTAW+AHFFFVMLCD+VSGGSQVNPSVSVAMFVHGAISFPGAIVRILAQLAAG++AYPLLQKLSPSYVGVGGP LQDG+STTTGALAEFTLTF LLTLIYLAITI+GAPGQRP+IAAGIR L+VAG YTGPAMNPMIAFGWAVQS AYK FDHYLVYWIAPTVGAVLATVLFAVFQASFLD+ KK+K+D
Sbjct: 6 VESPRQLVGAAIQEFFGALLMFLVLWPFVGVLGDTWTAWVAHFFFVMLCDIVSGGSQVNPSVSVAMFVHGAISFPGAIVRILAQLAAGVVAYPLLQKLSPSYVGVGGPCLQDGVSTTTGALAEFTLTFALLTLIYLAITIIGAPGQRPIIAAGIRCLIVAGTPYTGPAMNPMIAFGWAVQSDAYKTFDHYLVYWIAPTVGAVLATVLFAVFQASFLDE-RKKNKAD 230
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03140.1 ID=NO01G03140.1|Name=NO01G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1294bp CACATAAGATACGATTGTAACGAGCATTTTGGGACCCCACCACGGACCCA CTCCTGCACTTATTCTAACCAAAATTACGCGATACAAATAGTAAGCCTGC CTGGATGTGTTTCTAATGGTAGTGACAGCGATGACGGGGACGCCCAAGCA AGACACCCGCTAATTGCGTAGACCTCCGAGTCCCCATCCTGGTTCTACTT CATCTTCCACTTCATCAACCCTCGTGACAATTTACGAGATGACGCCAAAC AAACACGCATATAATATACCAATGCCGCCACTTGCGCTGGATCATCCTCT TGTCTGATTCTCCCCCCTTCAGACTCCTCAACTTACATCCTCTTCCTGCA ACCCTTACCCTGCATCCCAGACAGCGCAAAGCACTTCAACATTCCGACAA TGGGCGCGGTAGAATCCCCCCGCCAACTGGTGGGAGCGGCCATTCAAGAG TTTTTCGGTGCCCTACTGATGTTTCTGATCCTCTGGCCGTTTGTGGGCGT CTTTGGCAACACATGGACGGCCTGGCTGGCCCACTTCTTCTTCGTCATGC TGTGCGACGTCGTCTCCGGTGGCTCCCAAGTCAACCCCAGTGTTTCCGTC GCCATGTTCGTGCACGGAGCTATATCATTCCCTGGGGCCATCGTGCGTAT CCTTGCCCAGCTTGCTGCGGGCATAATTGCCTATCCTTTGCTTCAAAAGC TGAGCCCGAGCTACGTCGGTGTGGGGGGACCAGGCCTCCAAGATGGGATC AGCACGACTACGGGGGCACTGGCCGAATTTACATTAACGTTTGGATTGTT GACATTGATTTATTTGGCCATCACAATTGTTGGCGCGCCAGGGCAGCGCC CCGTCATTGCGGCGGGCATCCGCGGCTTGGTAGTGGCAGGCGGATCTTAC ACAGGACCAGCAATGAACCCCATGATTGCGTTTGGGTGGGCCGTGCAGAG CGGGGCCTACAAGAATTTCGACCACTACCTGGTTTATTGGATTGCCCCGA CCGTGGGCGCCGTTTTGGCCACGGTACTGTTCGCCGTCTTCCAAGCGTCC TTCCTGGACGACGGGGAGAAGAAGAGCAAAAGCGACTGAAGATGAACAGG ATACAGAGGTAAAAAGAGGGAAGACGGTGATGAGTAGTCAGGCGCTGAAA CAAGGCGTGGAAGAGGCAAAGCAAAAGGAAAGGAGGGAATAAGGCAGGCT GGAGCGACACCCTCAAGACAACAGCCAGAAAACTACATACACCTATCTGA AAAGAGGGGTTAAAAGATAGAAACAAGAAAGAAAAAGGGACTCA back to topprotein sequence of NO01G03140.1 >NO01G03140.1-protein ID=NO01G03140.1-protein|Name=NO01G03140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp MGAVESPRQLVGAAIQEFFGALLMFLILWPFVGVFGNTWTAWLAHFFFVM LCDVVSGGSQVNPSVSVAMFVHGAISFPGAIVRILAQLAAGIIAYPLLQK LSPSYVGVGGPGLQDGISTTTGALAEFTLTFGLLTLIYLAITIVGAPGQR PVIAAGIRGLVVAGGSYTGPAMNPMIAFGWAVQSGAYKNFDHYLVYWIAP TVGAVLATVLFAVFQASFLDDGEKKSKSD* back to topmRNA from alignment at chr1:827833..829749- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03140.1 ID=NO01G03140.1|Name=NO01G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1917bp|location=Sequence derived from alignment at chr1:827833..829749- (Nannochloropsis oceanica) CACATAAGATACGATTGTAACGAGCATTTTGGGACCCCACCACGGACCCA
CTCCTGCACTTATTCTAACCAAAATTACGCGATACAAATAGTAAGCCTGC
CTGGATGTGTTTCTAATGGTAGTGACAGCGATGACGGGGACGCCCAAGCA
AGACACCCGCTAATTGCGTAGACCTCCGAGTCCCCATCCTGGTTCTACTT
CATCTTCCACTTCATCAACCCTCGTGACAATTTACGAGATGACGCCAAAC
AAACACGCATATAATATACCAATGCCGCCACTTGCGCTGGATCATCCTCT
TGTCTGATTCTCCCCCCTTCAGACTCCTCAACTTACATCCTCTTCCTGCA
ACCCTTACCCTGCATCCCAGACAGCGCAAAGCACTTCAACATTCCGACAA
TGGGCGCGGTAGAATCCCCCCGCCAACTGGTGGGAGCGGCCATTCAAGAG
TTTTTCGGTGCCCTACTGATGTTTCTGATCCTCTGGCCGTTTGTGGGCGT
CTTTGGCAACACATGGACGGCCTGGCTGGCCCACTTCTTCTTCGTCATGC
TGGTGAGGCAGGGAAGAGGAGGGTGGGATGTTGAGGGTGGAATGGGTGAA
GAGGGAAAGAGGAGGAGAGTAGTCTAGTGCAATGAGTGATCTTGATGGGA
TGGGACGAATCACATGTCTTGGATTTGTCTTGCGCGGCGTGTAAGAATTG
CCCACTTCTTACGCGATGCCCACCCGTCCCACCAACACCGACTAGTGCGA
CGTCGTCTCCGGTGGCTCCCAAGTCAACCCCAGTGTTTCCGTCGCCATGT
TCGTGCACGGAGCTATATCATTCCCTGGGGCCATCGTGCGTATCCTTGCC
CAGCTTGCTGCGGGCATAATTGCCTATCCTTTGCTTCAAAAGCTGAGCCC
GAGCTACGTCGGTGTGGGGGGACCAGGCCTCCAAGATGGGATCAGCACGA
CTACGGGGGCACTGGCCGAATTTACATTAACGTTTGGATTGTTGACATTG
ATTTATTTGGCCATCACAATTGTTGGCGCGCCAGGGCAGGTGGGTGATGG
TGGCGGTCGGTCGGTGTGGTGGTTTGGGAGAGGAATGGAAGGCGTAGGAG
TGACGGAAGAAAGGTGCTGGTATATGGTCCATGGTTTGAGAAAGAAACGA
GAAAGAGAGAAAGAAAAACAATCTGCTCCTATACAACGGGAGCGGTTCAC
CGAAACGTTAAGTTTATGTGCAGATCTTCAGGAACAGTTTTGATCCTACC
TTTCTCACGACACGAACGCATGCATACACACACATGAACAAAAACACAGC
GCCCCGTCATTGCGGCGGGCATCCGCGGCTTGGTAGTGGCAGGCGGATCT
TACACAGGACCAGCAATGAACCCCATGATTGCGTTTGGGTGGGCCGTGCA
GAGCGGGGCCTACAAGGTATGGGCTTGTGACTCCTCATGTGCTGCTTTTT
GTGGCAGTGACGATTTTTCAACAGTTTTTATGCATGTCACACTACCCCCC
TACTCCTTCCGGTCTTATTTGTATGTTTGTATGGTTACTCACATTCTTCG
CAAATTTTGCCTTCTTTTTTTTTTCTTTGCACTCAGAATTTCGACCACTA
CCTGGTTTATTGGATTGCCCCGACCGTGGGCGCCGTTTTGGCCACGGTAC
TGTTCGCCGTCTTCCAAGCGTCCTTCCTGGACGACGGGGAGAAGAAGAGC
AAAAGCGACTGAAGATGAACAGGATACAGAGGTAAAAAGAGGGAAGACGG
TGATGAGTAGTCAGGCGCTGAAACAAGGCGTGGAAGAGGCAAAGCAAAAG
GAAAGGAGGGAATAAGGCAGGCTGGAGCGACACCCTCAAGACAACAGCCA
GAAAACTACATACACCTATCTGAAAAGAGGGGTTAAAAGATAGAAACAAG
AAAGAAAAAGGGACTCA back to topCoding sequence (CDS) from alignment at chr1:827833..829749- >NO01G03140.1 ID=NO01G03140.1|Name=NO01G03140.1|organism=Nannochloropsis oceanica|type=CDS|length=690bp|location=Sequence derived from alignment at chr1:827833..829749- (Nannochloropsis oceanica) ATGGGCGCGGTAGAATCCCCCCGCCAACTGGTGGGAGCGGCCATTCAAGA GTTTTTCGGTGCCCTACTGATGTTTCTGATCCTCTGGCCGTTTGTGGGCG TCTTTGGCAACACATGGACGGCCTGGCTGGCCCACTTCTTCTTCGTCATG CTGTGCGACGTCGTCTCCGGTGGCTCCCAAGTCAACCCCAGTGTTTCCGT CGCCATGTTCGTGCACGGAGCTATATCATTCCCTGGGGCCATCGTGCGTA TCCTTGCCCAGCTTGCTGCGGGCATAATTGCCTATCCTTTGCTTCAAAAG CTGAGCCCGAGCTACGTCGGTGTGGGGGGACCAGGCCTCCAAGATGGGAT CAGCACGACTACGGGGGCACTGGCCGAATTTACATTAACGTTTGGATTGT TGACATTGATTTATTTGGCCATCACAATTGTTGGCGCGCCAGGGCAGCGC CCCGTCATTGCGGCGGGCATCCGCGGCTTGGTAGTGGCAGGCGGATCTTA CACAGGACCAGCAATGAACCCCATGATTGCGTTTGGGTGGGCCGTGCAGA GCGGGGCCTACAAGAATTTCGACCACTACCTGGTTTATTGGATTGCCCCG ACCGTGGGCGCCGTTTTGGCCACGGTACTGTTCGCCGTCTTCCAAGCGTC CTTCCTGGACGACGGGGAGAAGAAGAGCAAAAGCGACTGA back to top
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