NO01G03130.1, NO01G03130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03130.1
Unique NameNO01G03130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2171
Alignment locationchr1:825265..827832 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:825265..827832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G03130.1 vs.
Match: EWM29237.1 (hypothetical protein Naga_100119g8 [Nannochloropsis gaditana])

HSP 1 Score: 529.3 bits (1362), Expect = 1.200e-146
Identity = 266/440 (60.45%), Postives = 326/440 (74.09%), Query Frame = 0
Query:   12 LMPLMLGLLSVMVSGVLVAWRRIDANFSLPPDH----HPYETQSYGGTRVQHKTSDMQYYMQAHEKGSTSGGPYKTLVLYVYHESDEVTKDNLLFFLKAGVGDVEDPLTDYVIIVNGEAAIDLDGLPSNVMVVRRGNTCYDGGTAGEVLAGMDIKPYQFFFFINSSVRGPFLPSYFPQSTGGGLGAASSVHSSARRWTTAFTDLLNSHVKLVGTTINCEIRVHVQSMLLATDRVGMELLLKSGALDCAENREDAIMKYELGASAVIMENGYGVDCLMLRYAGIDWLALDPPECNGMRNPYLTLFNDGMNQNPLEVVFVKVKPHILASDHILQRFSDYILGRDEDLKSSGLYTQVMQNVLSYRREKLARMVEDCHASFDHESFIAQHPELGKETPQARYETFLRSHLFSGKPYRFSVPQTRKGDVTPYYCESFVSYGAPDF 448
            + P + G+L +M S VLVA +R  + F L        +PY+    G        S ++Y  Q ++ GS +   YKTLV+YVYHESD VTK+NL FFLKAGVGDVEDPLTDYVI+VNGE  +DLDGLP NV +  R NTCYDGG+AG VLA ++I  Y FF  +NSSVRGPFLPSYF  + GGGLG  SS+++ +R WTTAFTDLLNS+VKL GTTINCE+ VHVQSMLLATD VG+++L+ SGA +CA +R+ AI  YELGASA IMENGY VDCLMLRYAG+DWL+L  P+CN + NPY+ L+NDGM+ NPLEVVFVKVKPH LASDH +QR++DY+LGRD DL SS  Y+  +Q V++ RR++L RMV DC ASFDH SF+ +HPEL      A YE FL  +LFSG+PYR++VP  R+ DV   YC SFV YG PDF
Sbjct:   23 MTPQLWGMLCIMASIVLVARQRTQS-FPLQSKQGRASNPYQVLGSGDV-----ASGVRYKPQTYDDGSDNIS-YKTLVIYVYHESDAVTKENLQFFLKAGVGDVEDPLTDYVIVVNGETTLDLDGLPPNVRIKYRDNTCYDGGSAGVVLAEVNIAEYHFFIIMNSSVRGPFLPSYFSHTAGGGLGVGSSLYAQSRPWTTAFTDLLNSYVKLAGTTINCEVHVHVQSMLLATDSVGLKILIDSGAFECARDRDAAIANYELGASARIMENGYSVDCLMLRYAGVDWLSLKSPKCNQLLNPYVPLYNDGMSLNPLEVVFVKVKPHTLASDHTVQRWTDYVLGRD-DLVSSFFYSSTVQRVVADRRKRLERMVRDCDASFDHASFLERHPELDPAAKSANYELFLDKYLFSGEPYRYTVPHKREEDVPHLYCRSFVKYGVPDF 454          
The following BLAST results are available for this feature:
BLAST of NO01G03130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29237.11.200e-14660.45hypothetical protein Naga_100119g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03130NO01G03130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03130.1NO01G03130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03130.1.cds1NO01G03130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03130.1.cds2NO01G03130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03130.1.cds3NO01G03130.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03130.1 ID=NO01G03130.1|Name=NO01G03130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2171bp
CAAATAAGTTGCATTTTTCCTCCCATTTTTTGGTTTCCAAGAACACGGCT
GGAGGTGGGAGGTATATTTAACACATAGAGCTGCACGAGCCTCGAGATGG
TTCAAGTGCATAAGACGCTAGCTACTGCCCTGTCTATGGAAGGGATCATT
CTCTCCACGGTCAGTGTCGTCAGTGTCGGCAAGCTTCGGCATGGTCCATT
AAAAGCCCCTGTTGAGGGTGTACGCAAGTCAAGAAGCCTGCGCGGAGCTT
CAGCACTTACATCCACCACCTCTATTCCCACAAGCACAAGTAATCCAGGG
GCTCGCAAGCACAAGAAGTAACACGAGCAAAAGGGCCTTCTCGAACTGCT
TTGCTGGATCAAATTGTGCCTCACAGGCGGGATTTCGGAGCCAGCACCTC
TTCTTTCCGTGCTGGGATCAGGTGCACTCACAACACTTTGTGACCACACA
TACAGAGGTTGCACGACGGCGGGAGCGCGGAAAAGATGAGGACATCCACA
AATAGGTCTCGCCTGTCCTTGATGCCGCTCATGTTGGGGTTGCTGAGCGT
AATGGTCAGCGGCGTTTTGGTGGCATGGCGACGGATTGATGCAAATTTCT
CTCTGCCCCCTGATCACCACCCCTACGAGACGCAGTCCTATGGGGGAACG
CGAGTACAGCATAAAACATCGGATATGCAGTACTATATGCAGGCGCACGA
GAAAGGTTCTACTTCGGGGGGCCCTTACAAGACGCTGGTTTTGTATGTCT
ACCATGAAAGCGACGAGGTTACCAAGGATAATCTGCTATTTTTCCTTAAG
GCCGGCGTCGGGGACGTAGAAGATCCACTGACAGATTACGTCATTATTGT
CAATGGCGAGGCCGCCATTGACCTGGACGGTCTCCCGTCCAACGTCATGG
TGGTCCGTCGCGGCAACACCTGCTATGACGGTGGCACGGCTGGGGAAGTT
CTCGCAGGGATGGACATTAAGCCCTATCAATTCTTTTTCTTCATAAACAG
CTCCGTCCGCGGGCCTTTCCTTCCTTCCTACTTCCCGCAATCGACGGGCG
GAGGCCTGGGAGCAGCTTCTTCGGTGCACTCGTCGGCGCGGCGATGGACG
ACGGCATTCACGGATTTATTAAACAGTCATGTAAAGTTGGTCGGAACGAC
GATAAATTGCGAGATTCGCGTGCATGTTCAATCAATGCTGTTGGCCACAG
ACAGGGTGGGCATGGAGCTGTTGTTGAAGTCCGGAGCGTTGGATTGTGCG
GAGAATAGGGAGGATGCAATTATGAAATATGAGTTAGGCGCGAGTGCCGT
GATTATGGAAAATGGTTACGGTGTCGACTGCCTCATGCTCCGGTACGCGG
GCATTGACTGGCTTGCCTTGGACCCGCCAGAGTGCAATGGAATGCGAAAC
CCTTATTTGACGTTGTTCAATGATGGGATGAATCAAAATCCTTTGGAAGT
GGTGTTCGTAAAGGTGAAGCCTCATATATTGGCGTCGGATCACATCCTTC
AACGGTTTTCGGATTATATTTTGGGGCGAGACGAGGATTTGAAAAGCAGT
GGCTTATATACCCAAGTGATGCAGAATGTGCTGAGCTACCGCAGGGAGAA
ACTTGCGAGAATGGTAGAGGATTGTCATGCTTCGTTTGATCATGAGAGCT
TCATAGCTCAGCATCCTGAACTGGGAAAAGAGACTCCTCAAGCAAGATAT
GAGACTTTTTTGCGATCCCATTTATTTTCAGGGAAACCGTATCGTTTTTC
TGTCCCGCAAACGCGGAAGGGGGATGTGACGCCTTACTATTGTGAGTCGT
TTGTGTCTTATGGAGCGCCAGATTTTTTCGGGTAGGCTGAAGGAGGGAGG
GAAGGGGGGAGGAATAGAGGGAGGAAAATAGATGCTATTTTTGTGCTTAG
AAGGGGTCAGGAGAGAGAAGCAGTTCGGGTTAGGGGAGGTGGAGGATGCG
CGATGATTTTGTGTATCTAAAATGTACGAAATAATAGGAGTAGCAGTAAC
AGTAGCAGTAATGCGAGCAAACTTAAGACTGCAAAATCAATGAACAATTA
ATTTGATTAAAACAGAATGAACCAAAGCCATTGAGTATCGAGTAAGTTCA
TGTGCGTAATGATGTGGCAAATGACTCCCAAAAAACGCATTTCATGTTCC
TACTGCTCTCCTGTCCTCTTT
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protein sequence of NO01G03130.1

>NO01G03130.1-protein ID=NO01G03130.1-protein|Name=NO01G03130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp
MRTSTNRSRLSLMPLMLGLLSVMVSGVLVAWRRIDANFSLPPDHHPYETQ
SYGGTRVQHKTSDMQYYMQAHEKGSTSGGPYKTLVLYVYHESDEVTKDNL
LFFLKAGVGDVEDPLTDYVIIVNGEAAIDLDGLPSNVMVVRRGNTCYDGG
TAGEVLAGMDIKPYQFFFFINSSVRGPFLPSYFPQSTGGGLGAASSVHSS
ARRWTTAFTDLLNSHVKLVGTTINCEIRVHVQSMLLATDRVGMELLLKSG
ALDCAENREDAIMKYELGASAVIMENGYGVDCLMLRYAGIDWLALDPPEC
NGMRNPYLTLFNDGMNQNPLEVVFVKVKPHILASDHILQRFSDYILGRDE
DLKSSGLYTQVMQNVLSYRREKLARMVEDCHASFDHESFIAQHPELGKET
PQARYETFLRSHLFSGKPYRFSVPQTRKGDVTPYYCESFVSYGAPDFFG*
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mRNA from alignment at chr1:825265..827832-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03130.1 ID=NO01G03130.1|Name=NO01G03130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2568bp|location=Sequence derived from alignment at chr1:825265..827832- (Nannochloropsis oceanica)
CAAATAAGTTGCATTTTTCCTCCCATTTTTTGGTTTCCAAGAACACGGCT GGAGGTGGGAGGTATATTTAACACATAGAGCTGCACGAGCCTCGAGATGG TTCAAGTGCATAAGACGCTAGCTACTGCCCTGTCTATGGAAGGGATCATT CTCTCCACGGTCAGTGTCGTCAGTGTCGGCAAGCTTCGGCATGGTCCATT AAAAGCCCCTGTTGAGGGTGTACGCAAGTCAAGAAGCCTGCGCGGAGCTT CAGCACTTACATCCACCACCTCTATTCCCACAAGCACAAGTAATCCAGGG GCTCGCAAGCACAAGAAGTAACACGAGCAAAAGGGCCTTCTCGAACTGCT TTGCTGGATCAAATTGTGCCTCACAGGCGGGATTTCGGAGCCAGCACCTC TTCTTTCCGTGCTGGGATCAGGTGCACTCACAACACTTTGTGACCACACA TACAGAGGTTGCACGACGGCGGGAGCGCGGAAAAGATGAGGACATCCACA AATAGGTCTCGCCTGTCCTTGATGCCGCTCATGTTGGGGTTGCTGAGCGT AATGGTCAGCGGCGTTTTGGTGGCATGGCGACGGATTGATGCAAATTTCT CTCTGCCCCCTGATCACCACCCCTACGAGACGCAGTCCTATGGGGGAACG CGAGTACAGCATAAAACATCGGATATGCAGTACTATATGCAGGCGCACGA GAAAGGTTCTACTTCGGGGGGCCCTTACAAGACGCTGGTTTTGTATGTCT ACCATGAAAGCGACGAGGTTACCAAGGATAATCTGCTATTTTTCCTTAAG GTAAGAAGCATGGTAGGATGGTGGTGTAGGCGTGGAGAAACAGATCACCG TGGACTAAGTTGCTGTGTTGTTTCTACATATCATGTTTATTTGATATTGC TGTCGGAGTAAAGATCAAAACGAAGGGACGGACAGTCAACTGAAAGAAAG TGGACTGGACAAACCCTCTCTTACACACGCACCATTAACCCCACCCCCAG GCCGGCGTCGGGGACGTAGAAGATCCACTGACAGATTACGTCATTATTGT CAATGGCGAGGCCGCCATTGACCTGGACGGTCTCCCGTCCAACGTCATGG TGGTCCGTCGCGGCAACACCTGCTATGACGGTGGCACGGCTGGGGAAGTT CTCGCAGGGATGGACATTAAGCCCTATCAATTCTTTTTCTTCATAAACAG CTCCGTCCGCGGGCCTTTCCTTCCTTCCTACTTCCCGCAATCGACGGGCG GAGGCCTGGGAGCAGCTTCTTCGGTGCACTCGTCGGCGCGGCGATGGACG ACGGCATTCACGGATTTATTAAACAGTCATGTAAAGTTGGTCGGAACGAC GATAAATTGCGAGATTCGCGTGCATGTTCAATCAATGCTGTTGGCCACAG ACAGGGTGGGCATGGAGCTGTTGTTGAAGTCCGGAGCGTTGGATTGTGCG GAGAATAGGGAGGATGCAATTATGAAATATGAGTTAGGCGCGAGTGCCGT GATTATGGAAAATGGGTGAGCGGACTAGGAGAGGGGGGAGGGAGGGAGGG AGGGAGGGAGGGCCGGGGCGAAAAAATGGATGCCCACGCTGTTATATGCT ACTTCTTTGTCGTGGGCAGGGGAAAGAACGATTAAAATATCGGTATTGTA ATACGTGTTGCTTTCACTCTCACGTCCTCCCCCCACCTTCCCTCCCTCCC TCTTTTGAATAGTTACGGTGTCGACTGCCTCATGCTCCGGTACGCGGGCA TTGACTGGCTTGCCTTGGACCCGCCAGAGTGCAATGGAATGCGAAACCCT TATTTGACGTTGTTCAATGATGGGATGAATCAAAATCCTTTGGAAGTGGT GTTCGTAAAGGTGAAGCCTCATATATTGGCGTCGGATCACATCCTTCAAC GGTTTTCGGATTATATTTTGGGGCGAGACGAGGATTTGAAAAGCAGTGGC TTATATACCCAAGTGATGCAGAATGTGCTGAGCTACCGCAGGGAGAAACT TGCGAGAATGGTAGAGGATTGTCATGCTTCGTTTGATCATGAGAGCTTCA TAGCTCAGCATCCTGAACTGGGAAAAGAGACTCCTCAAGCAAGATATGAG ACTTTTTTGCGATCCCATTTATTTTCAGGGAAACCGTATCGTTTTTCTGT CCCGCAAACGCGGAAGGGGGATGTGACGCCTTACTATTGTGAGTCGTTTG TGTCTTATGGAGCGCCAGATTTTTTCGGGTAGGCTGAAGGAGGGAGGGAA GGGGGGAGGAATAGAGGGAGGAAAATAGATGCTATTTTTGTGCTTAGAAG GGGTCAGGAGAGAGAAGCAGTTCGGGTTAGGGGAGGTGGAGGATGCGCGA TGATTTTGTGTATCTAAAATGTACGAAATAATAGGAGTAGCAGTAACAGT AGCAGTAATGCGAGCAAACTTAAGACTGCAAAATCAATGAACAATTAATT TGATTAAAACAGAATGAACCAAAGCCATTGAGTATCGAGTAAGTTCATGT GCGTAATGATGTGGCAAATGACTCCCAAAAAACGCATTTCATGTTCCTAC TGCTCTCCTGTCCTCTTT
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Coding sequence (CDS) from alignment at chr1:825265..827832-

>NO01G03130.1 ID=NO01G03130.1|Name=NO01G03130.1|organism=Nannochloropsis oceanica|type=CDS|length=1350bp|location=Sequence derived from alignment at chr1:825265..827832- (Nannochloropsis oceanica)
ATGAGGACATCCACAAATAGGTCTCGCCTGTCCTTGATGCCGCTCATGTT
GGGGTTGCTGAGCGTAATGGTCAGCGGCGTTTTGGTGGCATGGCGACGGA
TTGATGCAAATTTCTCTCTGCCCCCTGATCACCACCCCTACGAGACGCAG
TCCTATGGGGGAACGCGAGTACAGCATAAAACATCGGATATGCAGTACTA
TATGCAGGCGCACGAGAAAGGTTCTACTTCGGGGGGCCCTTACAAGACGC
TGGTTTTGTATGTCTACCATGAAAGCGACGAGGTTACCAAGGATAATCTG
CTATTTTTCCTTAAGGCCGGCGTCGGGGACGTAGAAGATCCACTGACAGA
TTACGTCATTATTGTCAATGGCGAGGCCGCCATTGACCTGGACGGTCTCC
CGTCCAACGTCATGGTGGTCCGTCGCGGCAACACCTGCTATGACGGTGGC
ACGGCTGGGGAAGTTCTCGCAGGGATGGACATTAAGCCCTATCAATTCTT
TTTCTTCATAAACAGCTCCGTCCGCGGGCCTTTCCTTCCTTCCTACTTCC
CGCAATCGACGGGCGGAGGCCTGGGAGCAGCTTCTTCGGTGCACTCGTCG
GCGCGGCGATGGACGACGGCATTCACGGATTTATTAAACAGTCATGTAAA
GTTGGTCGGAACGACGATAAATTGCGAGATTCGCGTGCATGTTCAATCAA
TGCTGTTGGCCACAGACAGGGTGGGCATGGAGCTGTTGTTGAAGTCCGGA
GCGTTGGATTGTGCGGAGAATAGGGAGGATGCAATTATGAAATATGAGTT
AGGCGCGAGTGCCGTGATTATGGAAAATGGTTACGGTGTCGACTGCCTCA
TGCTCCGGTACGCGGGCATTGACTGGCTTGCCTTGGACCCGCCAGAGTGC
AATGGAATGCGAAACCCTTATTTGACGTTGTTCAATGATGGGATGAATCA
AAATCCTTTGGAAGTGGTGTTCGTAAAGGTGAAGCCTCATATATTGGCGT
CGGATCACATCCTTCAACGGTTTTCGGATTATATTTTGGGGCGAGACGAG
GATTTGAAAAGCAGTGGCTTATATACCCAAGTGATGCAGAATGTGCTGAG
CTACCGCAGGGAGAAACTTGCGAGAATGGTAGAGGATTGTCATGCTTCGT
TTGATCATGAGAGCTTCATAGCTCAGCATCCTGAACTGGGAAAAGAGACT
CCTCAAGCAAGATATGAGACTTTTTTGCGATCCCATTTATTTTCAGGGAA
ACCGTATCGTTTTTCTGTCCCGCAAACGCGGAAGGGGGATGTGACGCCTT
ACTATTGTGAGTCGTTTGTGTCTTATGGAGCGCCAGATTTTTTCGGGTAG
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Synonyms
Publications