|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:825265..827832 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G03130.1 vs.
Match: EWM29237.1 (hypothetical protein Naga_100119g8 [Nannochloropsis gaditana]) HSP 1 Score: 529.3 bits (1362), Expect = 1.200e-146 Identity = 266/440 (60.45%), Postives = 326/440 (74.09%), Query Frame = 0
Query: 12 LMPLMLGLLSVMVSGVLVAWRRIDANFSLPPDH----HPYETQSYGGTRVQHKTSDMQYYMQAHEKGSTSGGPYKTLVLYVYHESDEVTKDNLLFFLKAGVGDVEDPLTDYVIIVNGEAAIDLDGLPSNVMVVRRGNTCYDGGTAGEVLAGMDIKPYQFFFFINSSVRGPFLPSYFPQSTGGGLGAASSVHSSARRWTTAFTDLLNSHVKLVGTTINCEIRVHVQSMLLATDRVGMELLLKSGALDCAENREDAIMKYELGASAVIMENGYGVDCLMLRYAGIDWLALDPPECNGMRNPYLTLFNDGMNQNPLEVVFVKVKPHILASDHILQRFSDYILGRDEDLKSSGLYTQVMQNVLSYRREKLARMVEDCHASFDHESFIAQHPELGKETPQARYETFLRSHLFSGKPYRFSVPQTRKGDVTPYYCESFVSYGAPDF 448
+ P + G+L +M S VLVA +R + F L +PY+ G S ++Y Q ++ GS + YKTLV+YVYHESD VTK+NL FFLKAGVGDVEDPLTDYVI+VNGE +DLDGLP NV + R NTCYDGG+AG VLA ++I Y FF +NSSVRGPFLPSYF + GGGLG SS+++ +R WTTAFTDLLNS+VKL GTTINCE+ VHVQSMLLATD VG+++L+ SGA +CA +R+ AI YELGASA IMENGY VDCLMLRYAG+DWL+L P+CN + NPY+ L+NDGM+ NPLEVVFVKVKPH LASDH +QR++DY+LGRD DL SS Y+ +Q V++ RR++L RMV DC ASFDH SF+ +HPEL A YE FL +LFSG+PYR++VP R+ DV YC SFV YG PDF
Sbjct: 23 MTPQLWGMLCIMASIVLVARQRTQS-FPLQSKQGRASNPYQVLGSGDV-----ASGVRYKPQTYDDGSDNIS-YKTLVIYVYHESDAVTKENLQFFLKAGVGDVEDPLTDYVIVVNGETTLDLDGLPPNVRIKYRDNTCYDGGSAGVVLAEVNIAEYHFFIIMNSSVRGPFLPSYFSHTAGGGLGVGSSLYAQSRPWTTAFTDLLNSYVKLAGTTINCEVHVHVQSMLLATDSVGLKILIDSGAFECARDRDAAIANYELGASARIMENGYSVDCLMLRYAGVDWLSLKSPKCNQLLNPYVPLYNDGMSLNPLEVVFVKVKPHTLASDHTVQRWTDYVLGRD-DLVSSFFYSSTVQRVVADRRKRLERMVRDCDASFDHASFLERHPELDPAAKSANYELFLDKYLFSGEPYRYTVPHKREEDVPHLYCRSFVKYGVPDF 454
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G03130.1 ID=NO01G03130.1|Name=NO01G03130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2171bp CAAATAAGTTGCATTTTTCCTCCCATTTTTTGGTTTCCAAGAACACGGCT GGAGGTGGGAGGTATATTTAACACATAGAGCTGCACGAGCCTCGAGATGG TTCAAGTGCATAAGACGCTAGCTACTGCCCTGTCTATGGAAGGGATCATT CTCTCCACGGTCAGTGTCGTCAGTGTCGGCAAGCTTCGGCATGGTCCATT AAAAGCCCCTGTTGAGGGTGTACGCAAGTCAAGAAGCCTGCGCGGAGCTT CAGCACTTACATCCACCACCTCTATTCCCACAAGCACAAGTAATCCAGGG GCTCGCAAGCACAAGAAGTAACACGAGCAAAAGGGCCTTCTCGAACTGCT TTGCTGGATCAAATTGTGCCTCACAGGCGGGATTTCGGAGCCAGCACCTC TTCTTTCCGTGCTGGGATCAGGTGCACTCACAACACTTTGTGACCACACA TACAGAGGTTGCACGACGGCGGGAGCGCGGAAAAGATGAGGACATCCACA AATAGGTCTCGCCTGTCCTTGATGCCGCTCATGTTGGGGTTGCTGAGCGT AATGGTCAGCGGCGTTTTGGTGGCATGGCGACGGATTGATGCAAATTTCT CTCTGCCCCCTGATCACCACCCCTACGAGACGCAGTCCTATGGGGGAACG CGAGTACAGCATAAAACATCGGATATGCAGTACTATATGCAGGCGCACGA GAAAGGTTCTACTTCGGGGGGCCCTTACAAGACGCTGGTTTTGTATGTCT ACCATGAAAGCGACGAGGTTACCAAGGATAATCTGCTATTTTTCCTTAAG GCCGGCGTCGGGGACGTAGAAGATCCACTGACAGATTACGTCATTATTGT CAATGGCGAGGCCGCCATTGACCTGGACGGTCTCCCGTCCAACGTCATGG TGGTCCGTCGCGGCAACACCTGCTATGACGGTGGCACGGCTGGGGAAGTT CTCGCAGGGATGGACATTAAGCCCTATCAATTCTTTTTCTTCATAAACAG CTCCGTCCGCGGGCCTTTCCTTCCTTCCTACTTCCCGCAATCGACGGGCG GAGGCCTGGGAGCAGCTTCTTCGGTGCACTCGTCGGCGCGGCGATGGACG ACGGCATTCACGGATTTATTAAACAGTCATGTAAAGTTGGTCGGAACGAC GATAAATTGCGAGATTCGCGTGCATGTTCAATCAATGCTGTTGGCCACAG ACAGGGTGGGCATGGAGCTGTTGTTGAAGTCCGGAGCGTTGGATTGTGCG GAGAATAGGGAGGATGCAATTATGAAATATGAGTTAGGCGCGAGTGCCGT GATTATGGAAAATGGTTACGGTGTCGACTGCCTCATGCTCCGGTACGCGG GCATTGACTGGCTTGCCTTGGACCCGCCAGAGTGCAATGGAATGCGAAAC CCTTATTTGACGTTGTTCAATGATGGGATGAATCAAAATCCTTTGGAAGT GGTGTTCGTAAAGGTGAAGCCTCATATATTGGCGTCGGATCACATCCTTC AACGGTTTTCGGATTATATTTTGGGGCGAGACGAGGATTTGAAAAGCAGT GGCTTATATACCCAAGTGATGCAGAATGTGCTGAGCTACCGCAGGGAGAA ACTTGCGAGAATGGTAGAGGATTGTCATGCTTCGTTTGATCATGAGAGCT TCATAGCTCAGCATCCTGAACTGGGAAAAGAGACTCCTCAAGCAAGATAT GAGACTTTTTTGCGATCCCATTTATTTTCAGGGAAACCGTATCGTTTTTC TGTCCCGCAAACGCGGAAGGGGGATGTGACGCCTTACTATTGTGAGTCGT TTGTGTCTTATGGAGCGCCAGATTTTTTCGGGTAGGCTGAAGGAGGGAGG GAAGGGGGGAGGAATAGAGGGAGGAAAATAGATGCTATTTTTGTGCTTAG AAGGGGTCAGGAGAGAGAAGCAGTTCGGGTTAGGGGAGGTGGAGGATGCG CGATGATTTTGTGTATCTAAAATGTACGAAATAATAGGAGTAGCAGTAAC AGTAGCAGTAATGCGAGCAAACTTAAGACTGCAAAATCAATGAACAATTA ATTTGATTAAAACAGAATGAACCAAAGCCATTGAGTATCGAGTAAGTTCA TGTGCGTAATGATGTGGCAAATGACTCCCAAAAAACGCATTTCATGTTCC TACTGCTCTCCTGTCCTCTTT back to topprotein sequence of NO01G03130.1 >NO01G03130.1-protein ID=NO01G03130.1-protein|Name=NO01G03130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=450bp MRTSTNRSRLSLMPLMLGLLSVMVSGVLVAWRRIDANFSLPPDHHPYETQ SYGGTRVQHKTSDMQYYMQAHEKGSTSGGPYKTLVLYVYHESDEVTKDNL LFFLKAGVGDVEDPLTDYVIIVNGEAAIDLDGLPSNVMVVRRGNTCYDGG TAGEVLAGMDIKPYQFFFFINSSVRGPFLPSYFPQSTGGGLGAASSVHSS ARRWTTAFTDLLNSHVKLVGTTINCEIRVHVQSMLLATDRVGMELLLKSG ALDCAENREDAIMKYELGASAVIMENGYGVDCLMLRYAGIDWLALDPPEC NGMRNPYLTLFNDGMNQNPLEVVFVKVKPHILASDHILQRFSDYILGRDE DLKSSGLYTQVMQNVLSYRREKLARMVEDCHASFDHESFIAQHPELGKET PQARYETFLRSHLFSGKPYRFSVPQTRKGDVTPYYCESFVSYGAPDFFG* back to topmRNA from alignment at chr1:825265..827832- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G03130.1 ID=NO01G03130.1|Name=NO01G03130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2568bp|location=Sequence derived from alignment at chr1:825265..827832- (Nannochloropsis oceanica) CAAATAAGTTGCATTTTTCCTCCCATTTTTTGGTTTCCAAGAACACGGCT
GGAGGTGGGAGGTATATTTAACACATAGAGCTGCACGAGCCTCGAGATGG
TTCAAGTGCATAAGACGCTAGCTACTGCCCTGTCTATGGAAGGGATCATT
CTCTCCACGGTCAGTGTCGTCAGTGTCGGCAAGCTTCGGCATGGTCCATT
AAAAGCCCCTGTTGAGGGTGTACGCAAGTCAAGAAGCCTGCGCGGAGCTT
CAGCACTTACATCCACCACCTCTATTCCCACAAGCACAAGTAATCCAGGG
GCTCGCAAGCACAAGAAGTAACACGAGCAAAAGGGCCTTCTCGAACTGCT
TTGCTGGATCAAATTGTGCCTCACAGGCGGGATTTCGGAGCCAGCACCTC
TTCTTTCCGTGCTGGGATCAGGTGCACTCACAACACTTTGTGACCACACA
TACAGAGGTTGCACGACGGCGGGAGCGCGGAAAAGATGAGGACATCCACA
AATAGGTCTCGCCTGTCCTTGATGCCGCTCATGTTGGGGTTGCTGAGCGT
AATGGTCAGCGGCGTTTTGGTGGCATGGCGACGGATTGATGCAAATTTCT
CTCTGCCCCCTGATCACCACCCCTACGAGACGCAGTCCTATGGGGGAACG
CGAGTACAGCATAAAACATCGGATATGCAGTACTATATGCAGGCGCACGA
GAAAGGTTCTACTTCGGGGGGCCCTTACAAGACGCTGGTTTTGTATGTCT
ACCATGAAAGCGACGAGGTTACCAAGGATAATCTGCTATTTTTCCTTAAG
GTAAGAAGCATGGTAGGATGGTGGTGTAGGCGTGGAGAAACAGATCACCG
TGGACTAAGTTGCTGTGTTGTTTCTACATATCATGTTTATTTGATATTGC
TGTCGGAGTAAAGATCAAAACGAAGGGACGGACAGTCAACTGAAAGAAAG
TGGACTGGACAAACCCTCTCTTACACACGCACCATTAACCCCACCCCCAG
GCCGGCGTCGGGGACGTAGAAGATCCACTGACAGATTACGTCATTATTGT
CAATGGCGAGGCCGCCATTGACCTGGACGGTCTCCCGTCCAACGTCATGG
TGGTCCGTCGCGGCAACACCTGCTATGACGGTGGCACGGCTGGGGAAGTT
CTCGCAGGGATGGACATTAAGCCCTATCAATTCTTTTTCTTCATAAACAG
CTCCGTCCGCGGGCCTTTCCTTCCTTCCTACTTCCCGCAATCGACGGGCG
GAGGCCTGGGAGCAGCTTCTTCGGTGCACTCGTCGGCGCGGCGATGGACG
ACGGCATTCACGGATTTATTAAACAGTCATGTAAAGTTGGTCGGAACGAC
GATAAATTGCGAGATTCGCGTGCATGTTCAATCAATGCTGTTGGCCACAG
ACAGGGTGGGCATGGAGCTGTTGTTGAAGTCCGGAGCGTTGGATTGTGCG
GAGAATAGGGAGGATGCAATTATGAAATATGAGTTAGGCGCGAGTGCCGT
GATTATGGAAAATGGGTGAGCGGACTAGGAGAGGGGGGAGGGAGGGAGGG
AGGGAGGGAGGGCCGGGGCGAAAAAATGGATGCCCACGCTGTTATATGCT
ACTTCTTTGTCGTGGGCAGGGGAAAGAACGATTAAAATATCGGTATTGTA
ATACGTGTTGCTTTCACTCTCACGTCCTCCCCCCACCTTCCCTCCCTCCC
TCTTTTGAATAGTTACGGTGTCGACTGCCTCATGCTCCGGTACGCGGGCA
TTGACTGGCTTGCCTTGGACCCGCCAGAGTGCAATGGAATGCGAAACCCT
TATTTGACGTTGTTCAATGATGGGATGAATCAAAATCCTTTGGAAGTGGT
GTTCGTAAAGGTGAAGCCTCATATATTGGCGTCGGATCACATCCTTCAAC
GGTTTTCGGATTATATTTTGGGGCGAGACGAGGATTTGAAAAGCAGTGGC
TTATATACCCAAGTGATGCAGAATGTGCTGAGCTACCGCAGGGAGAAACT
TGCGAGAATGGTAGAGGATTGTCATGCTTCGTTTGATCATGAGAGCTTCA
TAGCTCAGCATCCTGAACTGGGAAAAGAGACTCCTCAAGCAAGATATGAG
ACTTTTTTGCGATCCCATTTATTTTCAGGGAAACCGTATCGTTTTTCTGT
CCCGCAAACGCGGAAGGGGGATGTGACGCCTTACTATTGTGAGTCGTTTG
TGTCTTATGGAGCGCCAGATTTTTTCGGGTAGGCTGAAGGAGGGAGGGAA
GGGGGGAGGAATAGAGGGAGGAAAATAGATGCTATTTTTGTGCTTAGAAG
GGGTCAGGAGAGAGAAGCAGTTCGGGTTAGGGGAGGTGGAGGATGCGCGA
TGATTTTGTGTATCTAAAATGTACGAAATAATAGGAGTAGCAGTAACAGT
AGCAGTAATGCGAGCAAACTTAAGACTGCAAAATCAATGAACAATTAATT
TGATTAAAACAGAATGAACCAAAGCCATTGAGTATCGAGTAAGTTCATGT
GCGTAATGATGTGGCAAATGACTCCCAAAAAACGCATTTCATGTTCCTAC
TGCTCTCCTGTCCTCTTT back to topCoding sequence (CDS) from alignment at chr1:825265..827832- >NO01G03130.1 ID=NO01G03130.1|Name=NO01G03130.1|organism=Nannochloropsis oceanica|type=CDS|length=1350bp|location=Sequence derived from alignment at chr1:825265..827832- (Nannochloropsis oceanica) ATGAGGACATCCACAAATAGGTCTCGCCTGTCCTTGATGCCGCTCATGTT GGGGTTGCTGAGCGTAATGGTCAGCGGCGTTTTGGTGGCATGGCGACGGA TTGATGCAAATTTCTCTCTGCCCCCTGATCACCACCCCTACGAGACGCAG TCCTATGGGGGAACGCGAGTACAGCATAAAACATCGGATATGCAGTACTA TATGCAGGCGCACGAGAAAGGTTCTACTTCGGGGGGCCCTTACAAGACGC TGGTTTTGTATGTCTACCATGAAAGCGACGAGGTTACCAAGGATAATCTG CTATTTTTCCTTAAGGCCGGCGTCGGGGACGTAGAAGATCCACTGACAGA TTACGTCATTATTGTCAATGGCGAGGCCGCCATTGACCTGGACGGTCTCC CGTCCAACGTCATGGTGGTCCGTCGCGGCAACACCTGCTATGACGGTGGC ACGGCTGGGGAAGTTCTCGCAGGGATGGACATTAAGCCCTATCAATTCTT TTTCTTCATAAACAGCTCCGTCCGCGGGCCTTTCCTTCCTTCCTACTTCC CGCAATCGACGGGCGGAGGCCTGGGAGCAGCTTCTTCGGTGCACTCGTCG GCGCGGCGATGGACGACGGCATTCACGGATTTATTAAACAGTCATGTAAA GTTGGTCGGAACGACGATAAATTGCGAGATTCGCGTGCATGTTCAATCAA TGCTGTTGGCCACAGACAGGGTGGGCATGGAGCTGTTGTTGAAGTCCGGA GCGTTGGATTGTGCGGAGAATAGGGAGGATGCAATTATGAAATATGAGTT AGGCGCGAGTGCCGTGATTATGGAAAATGGTTACGGTGTCGACTGCCTCA TGCTCCGGTACGCGGGCATTGACTGGCTTGCCTTGGACCCGCCAGAGTGC AATGGAATGCGAAACCCTTATTTGACGTTGTTCAATGATGGGATGAATCA AAATCCTTTGGAAGTGGTGTTCGTAAAGGTGAAGCCTCATATATTGGCGT CGGATCACATCCTTCAACGGTTTTCGGATTATATTTTGGGGCGAGACGAG GATTTGAAAAGCAGTGGCTTATATACCCAAGTGATGCAGAATGTGCTGAG CTACCGCAGGGAGAAACTTGCGAGAATGGTAGAGGATTGTCATGCTTCGT TTGATCATGAGAGCTTCATAGCTCAGCATCCTGAACTGGGAAAAGAGACT CCTCAAGCAAGATATGAGACTTTTTTGCGATCCCATTTATTTTCAGGGAA ACCGTATCGTTTTTCTGTCCCGCAAACGCGGAAGGGGGATGTGACGCCTT ACTATTGTGAGTCGTTTGTGTCTTATGGAGCGCCAGATTTTTTCGGGTAG back to top
|