NO01G03110.1, NO01G03110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03110.1
Unique NameNO01G03110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2174
Alignment locationchr1:819718..821983 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:819718..821983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03110.1 vs.
Match: EWM29233.1 (serine hydroxymethyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 839.3 bits (2167), Expect = 6.400e-240
Identity = 429/528 (81.25%), Postives = 466/528 (88.26%), Query Frame = 0 
Query:    1 MSRASQRRQLPVLGLVAGCFISFASAFAVPPSYWAPLSSSVAAPAEVTSTTTASQCPLPTPQSARSYNNIPPTNAASVSTDATTTAAASSVLAQEDAEVAALIQAERKRQISGIELIASENFASKAVLEALGSIMTNKYSEGRPGARYYGGNKYVDALERLCEARALSLFNLSSESWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGYYNEKRRVSATSIYFESLPYRVDPVTGLIDYEELQKLALLFRPRLIVAGGSAYPRDWDYARLREIADACGAYLMTDMAHISGLVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFFKKELAEAIHFAVFPSLQGGPHNHQIAALAVALKEASTPSFRQEYIWQVKRNAEALAMGLQSLGHVIVTNGTENHLLLWDVRPHGITGSKVEKLLEAIAISVNKNTIHGDKSASAPGGVRVGTPAMTTRGLTEGDFVKVAAFLDEGLRLALKIQAGSSSKKLVDFEKTMVAHAGEVVALRERVEAFATQYPFPS 529
            M R  +R QL +LGL+  C+ S A+AFAVPP YW PLS SVAA AE+ + +T SQC      S  ++     T AASV +       A S+LA ED EVA +IQAER RQISGIELIASENFASKAVLEALGS+MTNKYSEGRPGARYYGGN++VDALERLCEARALSLFNLSSESWGVNVQPYSGSPANFAVYTALL+PHDRIMGLDLPSGGHLTHGYYNEKRRVSATSIYFESLPYRVDPVTGL+DY+ELQKLA LFRPRLIVAGGSAYPRDWDYARLR IADACGAYLMTDMAHISGLVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFF+KELAE +HFAVFPSLQGGPHNHQIAALAVALKEA+ PSFRQ+YIW+VKRNAEALAM LQ LGH +VTNGTENHLLLWD+RPHGITGSKVEKLLEA+ ISVNKNTIHGDKSAS+PGGVRVGTPAMTTRGLTE DF+ VAAFLD+GLRLALK+QAG+ SKKLVDFE+ M AH  EV ALR+RV+ FA+ + FPS
Sbjct:    1 MERGGRRWQLAILGLMGWCWNSCAAAFAVPPCYWPPLSLSVAAAAELAAPSTQSQCRASPHGSRLAHAQKSSTVAASVLSGHE----APSILADEDPEVAHIIQAERIRQISGIELIASENFASKAVLEALGSVMTNKYSEGRPGARYYGGNEHVDALERLCEARALSLFNLSSESWGVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYNEKRRVSATSIYFESLPYRVDPVTGLVDYDELQKLASLFRPRLIVAGGSAYPRDWDYARLRAIADACGAYLMTDMAHISGLVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFFRKELAEQVHFAVFPSLQGGPHNHQIAALAVALKEAAAPSFRQDYIWRVKRNAEALAMELQRLGHSVVTNGTENHLLLWDMRPHGITGSKVEKLLEAVGISVNKNTIHGDKSASSPGGVRVGTPAMTTRGLTERDFLHVAAFLDDGLRLALKVQAGADSKKLVDFERAMQAHEQEVRALRDRVQHFASNFSFPS 524
The following BLAST results are available for this feature:
BLAST of NO01G03110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29233.16.400e-24081.25serine hydroxymethyltransferase [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03110NO01G03110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03110.1NO01G03110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03110.1.cds1NO01G03110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03110.1.cds2NO01G03110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03110.1 ID=NO01G03110.1|Name=NO01G03110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2174bp
CTCCAGTGCTTGGCTGGTGCCTGTATTATGGTACGGGATTGAGCGGGCGT
CTGTTAGTGTCTTGGTAAGTAGGTCGCGACGGGCGTGACTGAAGAGGAAG
GAGACGTTGGGGGTGTTGCCGTTTGGGGTACGTGACTGTTTCAAGAGCTA
ACTTGGAAAAGCTCGCGGAGGCCCAAAAAATCCACGATACGGTTGAGTTT
TGTGGTGTGATGATCAAGTACCGTGACGGGCGAGTGCAAAAGTCTCACAG
ATGCAGCGTCGTGTGCATGTGAGGGATTTTTCGATGTGAGGGAGCGACTC
CTACTCGGACCCTTTTTCTCGAGACGCCTCAACCGCTGAGTTGAACAGGC
AGGCGATGACTCATTCAATGCACACCACCACATAGTAAGCACAGCTGCCC
TACAAAGAGCCCGAGCACAGAAAGGTCCAGATTACAAGCAATATGAGCAG
AGCTAGTCAAAGACGGCAGCTTCCCGTGCTTGGGTTGGTAGCTGGGTGCT
TCATCTCATTTGCCAGTGCCTTTGCCGTCCCACCCTCGTATTGGGCGCCA
TTGTCGTCTTCAGTCGCCGCCCCAGCAGAAGTCACGAGCACCACAACAGC
TTCGCAGTGCCCCCTCCCTACGCCACAGAGTGCCAGGTCATACAACAATA
TCCCACCCACCAACGCAGCTTCCGTCTCGACTGATGCCACCACTACAGCA
GCAGCATCGTCCGTTCTCGCGCAGGAGGATGCGGAAGTGGCGGCTCTCAT
CCAAGCAGAGCGGAAGCGACAAATTTCGGGCATTGAATTGATTGCAAGCG
AGAATTTTGCCTCCAAAGCTGTTTTGGAAGCCTTGGGCTCCATCATGACC
AACAAGTACTCCGAAGGCCGACCAGGTGCCCGCTATTATGGAGGAAACAA
GTACGTGGATGCCTTGGAGAGGCTGTGTGAGGCGAGGGCGTTGTCGCTTT
TTAATCTGTCTTCTGAGAGCTGGGGCGTGAACGTGCAACCCTACTCGGGT
AGCCCAGCCAATTTCGCTGTCTATACTGCGTTGCTCCAACCCCATGACCG
CATAATGGGCCTGGATTTGCCATCGGGGGGGCATTTGACACACGGATACT
ACAACGAAAAGCGGCGGGTCTCGGCGACCTCTATATATTTTGAGAGCTTG
CCTTATCGCGTGGACCCCGTCACAGGTCTAATTGATTACGAGGAACTTCA
AAAGCTCGCCTTGCTTTTCCGACCCCGCCTTATTGTGGCGGGTGGAAGTG
CCTACCCGCGTGATTGGGATTACGCACGTTTGCGAGAGATTGCTGATGCT
TGCGGTGCTTACTTGATGACAGATATGGCTCACATAAGTGGCTTGGTCTC
CGCGGGGGCGTGCAACAACCCTTTCCCCTACTCCGACGTTGTCACTTCTA
CCACGCACAAGTCTTTGCGTGGGCCTCGTTCAGGCATGATTTTTTTCAAA
AAGGAGCTGGCGGAGGCGATTCATTTTGCTGTCTTTCCCTCTTTGCAAGG
GGGGCCGCACAACCACCAGATTGCCGCCTTGGCCGTGGCGCTGAAGGAGG
CGTCCACTCCCTCTTTTCGGCAAGAGTACATTTGGCAGGTGAAACGCAAT
GCAGAGGCGCTTGCGATGGGGCTTCAGAGTTTGGGACATGTCATCGTGAC
GAATGGCACGGAGAATCATCTCTTATTGTGGGATGTGCGTCCACATGGTA
TAACGGGCTCCAAAGTGGAGAAGCTATTAGAGGCTATTGCCATTTCGGTG
AATAAAAATACAATCCATGGGGATAAAAGTGCTAGTGCTCCAGGTGGGGT
TAGGGTAGGGACCCCAGCCATGACTACACGGGGGTTGACAGAAGGCGATT
TCGTCAAGGTGGCGGCCTTCCTGGATGAAGGCTTACGGTTGGCTTTGAAG
ATACAGGCGGGAAGTAGCAGTAAGAAATTGGTGGATTTTGAAAAGACAAT
GGTTGCGCATGCGGGCGAAGTGGTAGCGTTAAGAGAGAGGGTGGAGGCGT
TTGCGACACAATATCCGTTTCCATCGTGAGGAGGGGAGGGGGGCCAGGGA
AGGAAAAAAGGGGAAAATGACAAAGCTTTTGAGAGGCAGTAACGAGAGAT
GCACGCCCACACCCAGCAGAACAAGAAGAGATGTAACGAAATGTATATAA
ATGTAAAGAAGCCGCTGTTTTCAT
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protein sequence of NO01G03110.1

>NO01G03110.1-protein ID=NO01G03110.1-protein|Name=NO01G03110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=529bp
MSRASQRRQLPVLGLVAGCFISFASAFAVPPSYWAPLSSSVAAPAEVTST
TTASQCPLPTPQSARSYNNIPPTNAASVSTDATTTAAASSVLAQEDAEVA
ALIQAERKRQISGIELIASENFASKAVLEALGSIMTNKYSEGRPGARYYG
GNKYVDALERLCEARALSLFNLSSESWGVNVQPYSGSPANFAVYTALLQP
HDRIMGLDLPSGGHLTHGYYNEKRRVSATSIYFESLPYRVDPVTGLIDYE
ELQKLALLFRPRLIVAGGSAYPRDWDYARLREIADACGAYLMTDMAHISG
LVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFFKKELAEAIHFAVFPS
LQGGPHNHQIAALAVALKEASTPSFRQEYIWQVKRNAEALAMGLQSLGHV
IVTNGTENHLLLWDVRPHGITGSKVEKLLEAIAISVNKNTIHGDKSASAP
GGVRVGTPAMTTRGLTEGDFVKVAAFLDEGLRLALKIQAGSSSKKLVDFE
KTMVAHAGEVVALRERVEAFATQYPFPS*
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mRNA from alignment at chr1:819718..821983-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03110.1 ID=NO01G03110.1|Name=NO01G03110.1|organism=Nannochloropsis oceanica|type=mRNA|length=2266bp|location=Sequence derived from alignment at chr1:819718..821983- (Nannochloropsis oceanica)
CTCCAGTGCTTGGCTGGTGCCTGTATTATGGTACGGGATTGAGCGGGCGT
CTGTTAGTGTCTTGGTAAGTAGGTCGCGACGGGCGTGACTGAAGAGGAAG
GAGACGTTGGGGGTGTTGCCGTTTGGGGTACGTGACTGTTTCAAGAGCTA
ACTTGGAAAAGCTCGCGGAGGCCCAAAAAATCCACGATACGGTTGAGTTT
TGTGGTGTGATGATCAAGTACCGTGACGGGCGAGTGCAAAAGTCTCACAG
ATGCAGCGTCGTGTGCATGTGAGGGATTTTTCGATGTGAGGGAGCGACTC
CTACTCGGACCCTTTTTCTCGAGACGCCTCAACCGCTGAGTTGAACAGGC
AGGCGATGACTCATTCAATGCACACCACCACATAGTAAGCACAGCTGCCC
TACAAAGAGCCCGAGCACAGAAAGGTCCAGATTACAAGCAATATGAGCAG
AGCTAGTCAAAGGTAAGCCAGCTCCCAGCTCCTCCCTCCCTAGCCTCCCC
ACCCCATCTCATCTCATCATCACTCGCCTCTCACACCCCACGCCAATACA
AAAGACGGCAGCTTCCCGTGCTTGGGTTGGTAGCTGGGTGCTTCATCTCA
TTTGCCAGTGCCTTTGCCGTCCCACCCTCGTATTGGGCGCCATTGTCGTC
TTCAGTCGCCGCCCCAGCAGAAGTCACGAGCACCACAACAGCTTCGCAGT
GCCCCCTCCCTACGCCACAGAGTGCCAGGTCATACAACAATATCCCACCC
ACCAACGCAGCTTCCGTCTCGACTGATGCCACCACTACAGCAGCAGCATC
GTCCGTTCTCGCGCAGGAGGATGCGGAAGTGGCGGCTCTCATCCAAGCAG
AGCGGAAGCGACAAATTTCGGGCATTGAATTGATTGCAAGCGAGAATTTT
GCCTCCAAAGCTGTTTTGGAAGCCTTGGGCTCCATCATGACCAACAAGTA
CTCCGAAGGCCGACCAGGTGCCCGCTATTATGGAGGAAACAAGTACGTGG
ATGCCTTGGAGAGGCTGTGTGAGGCGAGGGCGTTGTCGCTTTTTAATCTG
TCTTCTGAGAGCTGGGGCGTGAACGTGCAACCCTACTCGGGTAGCCCAGC
CAATTTCGCTGTCTATACTGCGTTGCTCCAACCCCATGACCGCATAATGG
GCCTGGATTTGCCATCGGGGGGGCATTTGACACACGGATACTACAACGAA
AAGCGGCGGGTCTCGGCGACCTCTATATATTTTGAGAGCTTGCCTTATCG
CGTGGACCCCGTCACAGGTCTAATTGATTACGAGGAACTTCAAAAGCTCG
CCTTGCTTTTCCGACCCCGCCTTATTGTGGCGGGTGGAAGTGCCTACCCG
CGTGATTGGGATTACGCACGTTTGCGAGAGATTGCTGATGCTTGCGGTGC
TTACTTGATGACAGATATGGCTCACATAAGTGGCTTGGTCTCCGCGGGGG
CGTGCAACAACCCTTTCCCCTACTCCGACGTTGTCACTTCTACCACGCAC
AAGTCTTTGCGTGGGCCTCGTTCAGGCATGATTTTTTTCAAAAAGGAGCT
GGCGGAGGCGATTCATTTTGCTGTCTTTCCCTCTTTGCAAGGGGGGCCGC
ACAACCACCAGATTGCCGCCTTGGCCGTGGCGCTGAAGGAGGCGTCCACT
CCCTCTTTTCGGCAAGAGTACATTTGGCAGGTGAAACGCAATGCAGAGGC
GCTTGCGATGGGGCTTCAGAGTTTGGGACATGTCATCGTGACGAATGGCA
CGGAGAATCATCTCTTATTGTGGGATGTGCGTCCACATGGTATAACGGGC
TCCAAAGTGGAGAAGCTATTAGAGGCTATTGCCATTTCGGTGAATAAAAA
TACAATCCATGGGGATAAAAGTGCTAGTGCTCCAGGTGGGGTTAGGGTAG
GGACCCCAGCCATGACTACACGGGGGTTGACAGAAGGCGATTTCGTCAAG
GTGGCGGCCTTCCTGGATGAAGGCTTACGGTTGGCTTTGAAGATACAGGC
GGGAAGTAGCAGTAAGAAATTGGTGGATTTTGAAAAGACAATGGTTGCGC
ATGCGGGCGAAGTGGTAGCGTTAAGAGAGAGGGTGGAGGCGTTTGCGACA
CAATATCCGTTTCCATCGTGAGGAGGGGAGGGGGGCCAGGGAAGGAAAAA
AGGGGAAAATGACAAAGCTTTTGAGAGGCAGTAACGAGAGATGCACGCCC
ACACCCAGCAGAACAAGAAGAGATGTAACGAAATGTATATAAATGTAAAG
AAGCCGCTGTTTTCAT
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Coding sequence (CDS) from alignment at chr1:819718..821983-

>NO01G03110.1 ID=NO01G03110.1|Name=NO01G03110.1|organism=Nannochloropsis oceanica|type=CDS|length=1587bp|location=Sequence derived from alignment at chr1:819718..821983- (Nannochloropsis oceanica)
ATGAGCAGAGCTAGTCAAAGACGGCAGCTTCCCGTGCTTGGGTTGGTAGC
TGGGTGCTTCATCTCATTTGCCAGTGCCTTTGCCGTCCCACCCTCGTATT
GGGCGCCATTGTCGTCTTCAGTCGCCGCCCCAGCAGAAGTCACGAGCACC
ACAACAGCTTCGCAGTGCCCCCTCCCTACGCCACAGAGTGCCAGGTCATA
CAACAATATCCCACCCACCAACGCAGCTTCCGTCTCGACTGATGCCACCA
CTACAGCAGCAGCATCGTCCGTTCTCGCGCAGGAGGATGCGGAAGTGGCG
GCTCTCATCCAAGCAGAGCGGAAGCGACAAATTTCGGGCATTGAATTGAT
TGCAAGCGAGAATTTTGCCTCCAAAGCTGTTTTGGAAGCCTTGGGCTCCA
TCATGACCAACAAGTACTCCGAAGGCCGACCAGGTGCCCGCTATTATGGA
GGAAACAAGTACGTGGATGCCTTGGAGAGGCTGTGTGAGGCGAGGGCGTT
GTCGCTTTTTAATCTGTCTTCTGAGAGCTGGGGCGTGAACGTGCAACCCT
ACTCGGGTAGCCCAGCCAATTTCGCTGTCTATACTGCGTTGCTCCAACCC
CATGACCGCATAATGGGCCTGGATTTGCCATCGGGGGGGCATTTGACACA
CGGATACTACAACGAAAAGCGGCGGGTCTCGGCGACCTCTATATATTTTG
AGAGCTTGCCTTATCGCGTGGACCCCGTCACAGGTCTAATTGATTACGAG
GAACTTCAAAAGCTCGCCTTGCTTTTCCGACCCCGCCTTATTGTGGCGGG
TGGAAGTGCCTACCCGCGTGATTGGGATTACGCACGTTTGCGAGAGATTG
CTGATGCTTGCGGTGCTTACTTGATGACAGATATGGCTCACATAAGTGGC
TTGGTCTCCGCGGGGGCGTGCAACAACCCTTTCCCCTACTCCGACGTTGT
CACTTCTACCACGCACAAGTCTTTGCGTGGGCCTCGTTCAGGCATGATTT
TTTTCAAAAAGGAGCTGGCGGAGGCGATTCATTTTGCTGTCTTTCCCTCT
TTGCAAGGGGGGCCGCACAACCACCAGATTGCCGCCTTGGCCGTGGCGCT
GAAGGAGGCGTCCACTCCCTCTTTTCGGCAAGAGTACATTTGGCAGGTGA
AACGCAATGCAGAGGCGCTTGCGATGGGGCTTCAGAGTTTGGGACATGTC
ATCGTGACGAATGGCACGGAGAATCATCTCTTATTGTGGGATGTGCGTCC
ACATGGTATAACGGGCTCCAAAGTGGAGAAGCTATTAGAGGCTATTGCCA
TTTCGGTGAATAAAAATACAATCCATGGGGATAAAAGTGCTAGTGCTCCA
GGTGGGGTTAGGGTAGGGACCCCAGCCATGACTACACGGGGGTTGACAGA
AGGCGATTTCGTCAAGGTGGCGGCCTTCCTGGATGAAGGCTTACGGTTGG
CTTTGAAGATACAGGCGGGAAGTAGCAGTAAGAAATTGGTGGATTTTGAA
AAGACAATGGTTGCGCATGCGGGCGAAGTGGTAGCGTTAAGAGAGAGGGT
GGAGGCGTTTGCGACACAATATCCGTTTCCATCGTGA
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Synonyms
Publications