NO01G03100.1, NO01G03100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03100.1
Unique NameNO01G03100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1855
Alignment locationchr1:817503..819717 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:817503..819717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03100.1 vs.
Match: EWM29242.1 (d-glycerate 3-kinase [Nannochloropsis gaditana])

HSP 1 Score: 432.6 bits (1111), Expect = 1.300e-117
Identity = 223/391 (57.03%), Postives = 275/391 (70.33%), Query Frame = 0 
Query:    1 MRAGSNSISSRGSSNGGGWRERDRVLSYARQSPIYPKCLPATTATDPSPLPPSSQEWVDKGIFMKSQLSVPPSTPMQSDVGIRIFHLYLPLYFWLRGLVLRSRCRNRPFEPPSPLQQQQQQQQQQRQQRQQGLQPQHQQQRCPLVVGINAPQGAGKTTLVNFCRALFKLDGLRCVVLSIDDFYLTNKEQRAVAAKHKGNPLLQYRGNAGTHDVALGRETILKCISAREGENITVPFYDKSLCGGWGDRAPRERWPVVEGPVDVILLEGWMLGFRPWPSDGEEGGRSEEGLKDVNNYLGSYQEWHELVDAWVIVQVEDLEVIYKWRLEAERKMREKKGKEGSMTDEEVGDFVSRFLPAYRAYLQHSLYAADALPSEKPVLRVVIDCDRKPKG 392
            M AGS   +S G    G W+ERD VL++ARQSPIY KC    +  +P+ LP S+QEWVDKG+F++ +LSV  +TP+ S+ GIRIFH YLPLYFWLR LV   RCR     P                  Q   +P   Q R  +VVG+NAPQGAGKTTLVN CRALF LDGL CV LSIDDFYLTN +Q+ +AA+H GN LL++RGNAGTHDVALGR+TI++C+ A EGE + +P YDKSL  G GDRA R++WPVVEG +DV+LLEGWMLGFRP P D  +  + E GL  VN  LG Y++WH LVDAW ++QVEDL +I  WRLEAER MR ++G EG MTD +V DFVSRF+P+Y A+ +HS+Y  D L  +KPVLR+  D +R P G
Sbjct:   20 MYAGSCGFASGGR---GDWQERDDVLAFARQSPIYDKCF---SEQNPANLP-SAQEWVDKGLFLRDKLSVGQATPINSNFGIRIFHFYLPLYFWLRYLV---RCRRGQDLPTGT---------------QNNSEPLCSQPRT-IVVGLNAPQGAGKTTLVNLCRALFSLDGLSCVALSIDDFYLTNDDQQRLAAQHSGNRLLEHRGNAGTHDVALGRDTIIQCVQAGEGEKVALPRYDKSLGAGRGDRAHRQQWPVVEGRIDVVLLEGWMLGFRPLPPDAPQ-LQKEAGLAQVNANLGEYEQWHALVDAWAVIQVEDLSIIASWRLEAERGMRRERGAEGGMTDAQVRDFVSRFMPSYTAFSEHSIYNEDELSRKKPVLRIFFDKERNPTG 383
The following BLAST results are available for this feature:
BLAST of NO01G03100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29242.11.300e-11757.03d-glycerate 3-kinase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03100NO01G03100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03100.1NO01G03100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03100.1.cds1NO01G03100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03100.1.cds2NO01G03100.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03100.1.cds3NO01G03100.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03100.1 ID=NO01G03100.1|Name=NO01G03100.1|organism=Nannochloropsis oceanica|type=mRNA|length=1855bp
ACTTGCTTCAAGTCAGGCGGCAACGTCTACATCTCGCCTCAAACCCACAT
CCAACAGATAAATAATCCCCAAGTCACGCTTCGTCAAGGAAAAAGTGGCA
ACGTTGCCCTGCACCGTAGTTTGAGGGTGGCCAGAATAGCCGGGGCGTTG
GTTAGCGTCGTGGCCGGAGAGCCACCAAGCTCGCTTCCCCCCTCCTCCCC
CTCTCTCACTGCAATCTCTCAGTCCTCATCCCACGCTATCTCTACCAGGC
CACACTGCCCAATGCGGCGCTTGCGGATGCCGTGTATTCAATAGTTGGTG
TCATTCCCAGTGGCACATTCCTGACGATTTTGGTTGTAAACGAGATCAGG
AGCAGGAGCTGCAAAAACACTCCCCCGTGCTTGTGGGAGTCGCAAGCAAG
TATAGAAGGCTGCACATGCACAAGAGCAGCACCATTCTACAAAGTTACAC
TTCTGTGAAAATTGTATTCCTATCCTCCGCCCACATCCCACCGCACACAG
AGTTCAGGAGCAGCAGAAGCAGCAGAAGGCATACACCAGGACAAGGGACT
AAGGAAAGGTGGCATTTACCGGCTTTGTGATTGCCTGGAGGGTGGTCGGT
CTGAGGAGACTCCGTCTCATGCGGGCAGGATCTAACAGCATTAGCAGTCG
GGGTAGTAGCAATGGCGGGGGTTGGCGAGAGAGAGATCGAGTGCTGTCTT
ATGCACGCCAAAGCCCCATCTATCCCAAGTGCTTGCCAGCAACGACAGCA
ACAGACCCGAGCCCTCTTCCTCCCTCCAGCCAAGAATGGGTGGATAAGGG
CATCTTCATGAAAAGCCAGCTCTCCGTTCCACCATCCACGCCAATGCAGT
CTGACGTGGGCATCCGGATTTTTCATTTATATTTGCCGCTTTACTTTTGG
CTACGCGGCCTCGTGCTGCGGAGTCGATGCCGAAATAGGCCGTTTGAGCC
GCCATCACCACTCCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCGACAAC
AACGACAACAAGGATTGCAACCACAACACCAGCAGCAGCGCTGTCCTCTC
GTCGTGGGTATCAATGCTCCCCAAGGCGCTGGCAAGACGACCCTAGTCAA
TTTCTGCCGAGCTCTCTTCAAGCTAGACGGGCTGAGGTGCGTCGTTCTTT
CCATTGATGATTTTTATTTAACCAACAAAGAGCAACGAGCCGTAGCGGCA
AAGCACAAAGGTAATCCTCTCTTACAATACCGGGGGAATGCTGGGACGCA
TGATGTCGCCCTAGGCCGAGAAACCATCTTGAAATGCATTTCCGCTAGGG
AAGGAGAGAATATAACAGTTCCTTTTTATGATAAGTCTTTGTGTGGAGGA
TGGGGGGATCGAGCACCACGGGAGAGATGGCCAGTGGTGGAGGGCCCTGT
GGACGTTATTTTGCTGGAAGGGTGGATGCTTGGATTTAGGCCGTGGCCCT
CTGATGGGGAGGAAGGGGGAAGGAGTGAGGAGGGATTGAAGGACGTGAAT
AATTACTTGGGCAGCTATCAGGAATGGCACGAGCTGGTCGATGCTTGGGT
GATAGTGCAGGTGGAGGACTTAGAGGTAATATACAAGTGGCGGTTGGAGG
CGGAACGGAAAATGAGAGAGAAAAAGGGGAAGGAGGGGAGCATGACTGAT
GAGGAGGTGGGGGATTTTGTGTCGAGATTCTTGCCGGCCTACAGGGCGTA
TTTGCAGCATTCTTTGTATGCTGCTGATGCGTTGCCGTCGGAGAAGCCGG
TGTTGCGGGTGGTGATCGATTGTGACAGGAAGCCCAAGGGGTAAGACGAG
GAAAGAGGGTAGATACGGAAGAAGACAACAGCTGTAATTTGCATCGAGTT
TAAGG
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protein sequence of NO01G03100.1

>NO01G03100.1-protein ID=NO01G03100.1-protein|Name=NO01G03100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MRAGSNSISSRGSSNGGGWRERDRVLSYARQSPIYPKCLPATTATDPSPL
PPSSQEWVDKGIFMKSQLSVPPSTPMQSDVGIRIFHLYLPLYFWLRGLVL
RSRCRNRPFEPPSPLQQQQQQQQQQRQQRQQGLQPQHQQQRCPLVVGINA
PQGAGKTTLVNFCRALFKLDGLRCVVLSIDDFYLTNKEQRAVAAKHKGNP
LLQYRGNAGTHDVALGRETILKCISAREGENITVPFYDKSLCGGWGDRAP
RERWPVVEGPVDVILLEGWMLGFRPWPSDGEEGGRSEEGLKDVNNYLGSY
QEWHELVDAWVIVQVEDLEVIYKWRLEAERKMREKKGKEGSMTDEEVGDF
VSRFLPAYRAYLQHSLYAADALPSEKPVLRVVIDCDRKPKG*
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mRNA from alignment at chr1:817503..819717+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03100.1 ID=NO01G03100.1|Name=NO01G03100.1|organism=Nannochloropsis oceanica|type=mRNA|length=2215bp|location=Sequence derived from alignment at chr1:817503..819717+ (Nannochloropsis oceanica)
ACTTGCTTCAAGTCAGGCGGCAACGTCTACATCTCGCCTCAAACCCACAT
CCAACAGATAAATAATCCCCAAGTCACGCTTCGTCAAGGAAAAAGTGGCA
ACGTTGCCCTGCACCGTAGTTTGAGGGTGGCCAGAATAGCCGGGGCGTTG
GTTAGCGTCGTGGCCGGAGAGCCACCAAGCTCGCTTCCCCCCTCCTCCCC
CTCTCTCACTGCAATCTCTCAGTCCTCATCCCACGCTATCTCTACCAGGC
CACACTGCCCAATGCGGCGCTTGCGGATGCCGTGTATTCAATAGTTGGTG
TCATTCCCAGTGGCACATTCCTGACGATTTTGGTTGTAAACGAGATCAGG
AGCAGGAGCTGCAAAAACACTCCCCCGTGCTTGTGGGAGTCGCAAGCAAG
TATAGAAGGCTGCACATGCACAAGAGCAGCACCATTCTACAAAGTTACAC
TTCTGTGAAAATTGTATTCCTATCCTCCGCCCACATCCCACCGCACACAG
AGTTCAGGAGCAGCAGAAGCAGCAGAAGGCATACACCAGGACAAGGGACT
AAGGAAAGGTGGCATTTACCGGCTTTGTGATTGCCTGGAGGGTGGTCGGT
CTGAGGAGACTCCGTCTCATGCGGGCAGGATCTAACAGCATTAGCAGTCG
GGGTAGTAGCAATGGCGGGGGTTGGCGAGAGAGAGATCGAGTGCTGTCTT
ATGCACGTAAGTACCTACCTCCTACCTCCCTCTCCCTATGTGGATTCGTG
TGTACGAATGGTGTCAGTGATGGCCAATCGCTCAATTAATCATGACTCCT
TCGCTTCTGCGTCTTTTTTACTGAGTTCCTTCTTCCATTCCTCCTTCCTC
TAACAATTTGGCCCTCTGGTTCTACAGGCCAAAGCCCCATCTATCCCAAG
TGCTTGCCAGCAACGACAGCAACAGACCCGAGCCCTCTTCCTCCCTCCAG
CCAAGAATGGGTGGATAAGGGCATCTTCATGAAAAGCCAGCTCTCCGTTC
CACCATCCACGCCAATGCAGTCTGACGTGGGCATCCGGATTTTTCATTTA
TATTTGCCGGTATGTATACATATGAGTGTGTGTGTGTGTCAGTGTGTCAG
TGTGTGTATTGTTGTGTGACAAACAAACAAACAAACAAACAAACGTGTGT
CAGTGTGTGTATTGTTGTTGGAAAGGAAAGGGTTTCTTTTGATTCCATCT
CACTTCTCCAACCCATTTTTCATCTCTCTCTCCTCCTTTGGTCCCCAGCT
TTACTTTTGGCTACGCGGCCTCGTGCTGCGGAGTCGATGCCGAAATAGGC
CGTTTGAGCCGCCATCACCACTCCAGCAGCAGCAACAGCAGCAGCAGCAG
CAGCGACAACAACGACAACAAGGATTGCAACCACAACACCAGCAGCAGCG
CTGTCCTCTCGTCGTGGGTATCAATGCTCCCCAAGGCGCTGGCAAGACGA
CCCTAGTCAATTTCTGCCGAGCTCTCTTCAAGCTAGACGGGCTGAGGTGC
GTCGTTCTTTCCATTGATGATTTTTATTTAACCAACAAAGAGCAACGAGC
CGTAGCGGCAAAGCACAAAGGTAATCCTCTCTTACAATACCGGGGGAATG
CTGGGACGCATGATGTCGCCCTAGGCCGAGAAACCATCTTGAAATGCATT
TCCGCTAGGGAAGGAGAGAATATAACAGTTCCTTTTTATGATAAGTCTTT
GTGTGGAGGATGGGGGGATCGAGCACCACGGGAGAGATGGCCAGTGGTGG
AGGGCCCTGTGGACGTTATTTTGCTGGAAGGGTGGATGCTTGGATTTAGG
CCGTGGCCCTCTGATGGGGAGGAAGGGGGAAGGAGTGAGGAGGGATTGAA
GGACGTGAATAATTACTTGGGCAGCTATCAGGAATGGCACGAGCTGGTCG
ATGCTTGGGTGATAGTGCAGGTGGAGGACTTAGAGGTAATATACAAGTGG
CGGTTGGAGGCGGAACGGAAAATGAGAGAGAAAAAGGGGAAGGAGGGGAG
CATGACTGATGAGGAGGTGGGGGATTTTGTGTCGAGATTCTTGCCGGCCT
ACAGGGCGTATTTGCAGCATTCTTTGTATGCTGCTGATGCGTTGCCGTCG
GAGAAGCCGGTGTTGCGGGTGGTGATCGATTGTGACAGGAAGCCCAAGGG
GTAAGACGAGGAAAGAGGGTAGATACGGAAGAAGACAACAGCTGTAATTT
GCATCGAGTTTAAGG
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Coding sequence (CDS) from alignment at chr1:817503..819717+

>NO01G03100.1 ID=NO01G03100.1|Name=NO01G03100.1|organism=Nannochloropsis oceanica|type=CDS|length=1176bp|location=Sequence derived from alignment at chr1:817503..819717+ (Nannochloropsis oceanica)
ATGCGGGCAGGATCTAACAGCATTAGCAGTCGGGGTAGTAGCAATGGCGG
GGGTTGGCGAGAGAGAGATCGAGTGCTGTCTTATGCACGCCAAAGCCCCA
TCTATCCCAAGTGCTTGCCAGCAACGACAGCAACAGACCCGAGCCCTCTT
CCTCCCTCCAGCCAAGAATGGGTGGATAAGGGCATCTTCATGAAAAGCCA
GCTCTCCGTTCCACCATCCACGCCAATGCAGTCTGACGTGGGCATCCGGA
TTTTTCATTTATATTTGCCGCTTTACTTTTGGCTACGCGGCCTCGTGCTG
CGGAGTCGATGCCGAAATAGGCCGTTTGAGCCGCCATCACCACTCCAGCA
GCAGCAACAGCAGCAGCAGCAGCAGCGACAACAACGACAACAAGGATTGC
AACCACAACACCAGCAGCAGCGCTGTCCTCTCGTCGTGGGTATCAATGCT
CCCCAAGGCGCTGGCAAGACGACCCTAGTCAATTTCTGCCGAGCTCTCTT
CAAGCTAGACGGGCTGAGGTGCGTCGTTCTTTCCATTGATGATTTTTATT
TAACCAACAAAGAGCAACGAGCCGTAGCGGCAAAGCACAAAGGTAATCCT
CTCTTACAATACCGGGGGAATGCTGGGACGCATGATGTCGCCCTAGGCCG
AGAAACCATCTTGAAATGCATTTCCGCTAGGGAAGGAGAGAATATAACAG
TTCCTTTTTATGATAAGTCTTTGTGTGGAGGATGGGGGGATCGAGCACCA
CGGGAGAGATGGCCAGTGGTGGAGGGCCCTGTGGACGTTATTTTGCTGGA
AGGGTGGATGCTTGGATTTAGGCCGTGGCCCTCTGATGGGGAGGAAGGGG
GAAGGAGTGAGGAGGGATTGAAGGACGTGAATAATTACTTGGGCAGCTAT
CAGGAATGGCACGAGCTGGTCGATGCTTGGGTGATAGTGCAGGTGGAGGA
CTTAGAGGTAATATACAAGTGGCGGTTGGAGGCGGAACGGAAAATGAGAG
AGAAAAAGGGGAAGGAGGGGAGCATGACTGATGAGGAGGTGGGGGATTTT
GTGTCGAGATTCTTGCCGGCCTACAGGGCGTATTTGCAGCATTCTTTGTA
TGCTGCTGATGCGTTGCCGTCGGAGAAGCCGGTGTTGCGGGTGGTGATCG
ATTGTGACAGGAAGCCCAAGGGGTAA
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Synonyms
Publications