NO01G03050.1, NO01G03050.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03050.1
Unique NameNO01G03050.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1409
Alignment locationchr1:799603..801394 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:799603..801394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03050.1 vs.
Match: EWM29249.1 (photosystem ii oxygen evolving complex protein [Nannochloropsis gaditana])

HSP 1 Score: 332.4 bits (851), Expect = 1.200e-87
Identity = 176/245 (71.84%), Postives = 201/245 (82.04%), Query Frame = 0 
Query:    1 MRSSVIAVACLVAACGRTQAFVLPSKSSSTISSARPQSRALSSSTALAALST-----SMHDRRGLLFKTTGSLLGLAGLALVRPANAYDEVPLVRDKLGGLLEPYTDIAKGLKVSRPSGWNQFDGSPETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAKGRGAELVEAKARLTEGVLFYEFEFKGEAISELASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSFLPKL 241
            M   +  VAC + A G T AFV PS+SS    + +   +  ++   +A  +T     S  DRR LLFK+ GSLLGL GL+L RPA A +EVPLVRDK GGLLEPYTDIAKGLK+SRPSGWNQF+G+PETYVVKWSDIINRDE+VVLNSTPVKASTT+V+ALGDVQ++GKKLA GRGAELVEAKARLTEGVLFYEFEFKGEA+SE+A LCVAKGRLWNLSAT+ATKRW K+RDL KGVIGSFLPKL
Sbjct:    1 MLRGLFTVACSLTALG-TAAFVPPSRSSFIFPTRQQLQQQQTTGRVMALYATNTPSLSTLDRRALLFKSAGSLLGLVGLSLARPAEAVEEVPLVRDKQGGLLEPYTDIAKGLKLSRPSGWNQFEGTPETYVVKWSDIINRDEVVVLNSTPVKASTTAVDALGDVQDVGKKLAAGRGAELVEAKARLTEGVLFYEFEFKGEAVSEVACLCVAKGRLWNLSATSATKRWPKRRDLLKGVIGSFLPKL 244
The following BLAST results are available for this feature:
BLAST of NO01G03050.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29249.11.200e-8771.84photosystem ii oxygen evolving complex protein [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03050NO01G03050Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03050.1NO01G03050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03050.1.cds1NO01G03050.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03050.1.cds2NO01G03050.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03050.1 ID=NO01G03050.1|Name=NO01G03050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1409bp
AGCGGTGTGAGTTTTGAATGTGAGACGCGCGTGTCGCACACTGCAAGGGG
CTGCGCCCTTGCCTGCCTTACTCATCTCTTGGTGTGGAGGTATATGAAGC
ACCTGTGAGTCGCGTTTAAAAGAACTGACCCGCCAATTTTGTGGGTCCTC
CCGACAGGAGAGCCTCTCGGGGTTCTTCCACCGGGACCTGAGGGGCAATC
GTCACACTTTCTTGCACGAAGAAATACAGCAGGATGGATGCATCAACGGG
TTACGACCAGTGCTGCCACAATCCCTCCACCCACACAAGATGTGCTGGGT
GGAGGTCATGCATATTTATTGATTCATACACCATTGTCAACAATGTCAAT
CACACGCACACGATTTCCTTGTCGCACGTAATTTCCCCGCTTGACAACAA
CAACCAGAAGCCATGCGGAGCTCCGTCATCGCGGTGGCTTGCCTCGTGGC
TGCCTGCGGCAGAACCCAGGCCTTTGTCCTTCCTAGCAAGTCTTCCTCCA
CAATCTCCTCCGCTCGACCGCAATCAAGAGCTCTGAGCAGCAGCACAGCC
CTGGCGGCGTTGTCCACCTCCATGCATGACCGGCGTGGCCTCCTCTTCAA
GACGACAGGGTCGTTGCTTGGGTTGGCCGGCCTGGCCTTGGTCCGCCCCG
CCAATGCCTATGACGAGGTGCCCCTCGTCCGTGACAAGTTGGGTGGGTTG
CTGGAACCGTACACGGATATTGCCAAGGGTCTCAAAGTCTCCCGCCCCTC
CGGGTGGAACCAATTTGACGGCTCCCCCGAGACATACGTGGTAAAGTGGA
GCGATATCATCAACCGCGACGAGCTCGTCGTGTTGAACTCCACACCTGTC
AAGGCATCCACCACTTCCGTGGAAGCTCTGGGGGATGTCCAAGAAATTGG
AAAAAAACTTGCGAAAGGCCGCGGAGCCGAGCTGGTCGAGGCCAAGGCGA
GGCTGACGGAGGGGGTATTGTTTTATGAGTTTGAGTTCAAGGGGGAGGCG
ATCTCGGAGTTGGCGTCTTTGTGCGTGGCAAAGGGGCGACTGTGGAATCT
GAGTGCGACGGCCGCGACAAAACGATGGGCGAAGAAGAGGGATTTGTTCA
AGGGGGTGATTGGTTCCTTCTTGCCTAAGCTCTAAGCAACGGGGGGAAGA
AGCTGTGCCATTAAAGCTATTCTTGTTTCTGATTTCAGTCTTGGAGTGTC
TAGATTCGTGTATCTGTGAGTGCAAGTTGAGTGAGCATCATCTTTGTCGT
TGGAGTCTTTTAAAGGCAAGCAGTACAATTCTTCAGGGGCCATGTCCCCC
TCCAGAGGTAGGAAGCAATTAATCAATCGCAAAAACTTTTAAAAGATGCG
CACGCACACAATGATAAGGACGACTTATAGACGGGCATCGTACTTTCAAG
ATAAACATA
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protein sequence of NO01G03050.1

>NO01G03050.1-protein ID=NO01G03050.1-protein|Name=NO01G03050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MRSSVIAVACLVAACGRTQAFVLPSKSSSTISSARPQSRALSSSTALAAL
STSMHDRRGLLFKTTGSLLGLAGLALVRPANAYDEVPLVRDKLGGLLEPY
TDIAKGLKVSRPSGWNQFDGSPETYVVKWSDIINRDELVVLNSTPVKAST
TSVEALGDVQEIGKKLAKGRGAELVEAKARLTEGVLFYEFEFKGEAISEL
ASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSFLPKL*
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mRNA from alignment at chr1:799603..801394-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03050.1 ID=NO01G03050.1|Name=NO01G03050.1|organism=Nannochloropsis oceanica|type=mRNA|length=1792bp|location=Sequence derived from alignment at chr1:799603..801394- (Nannochloropsis oceanica)
AGCGGTGTGAGTTTTGAATGTGAGACGCGCGTGTCGCACACTGCAAGGGG
CTGCGCCCTTGCCTGCCTTACTCATCTCTTGGTGTGGAGGTATATGAAGC
ACCTGTGAGTCGCGTTTAAAAGAACTGACCCGCCAATTTTGTGGGTCCTC
CCGACAGGAGAGCCTCTCGGGGTTCTTCCACCGGGACCTGAGGGGCAATC
GTCACACTTTCTTGCACGAAGAAATACAGCAGGATGGATGCATCAACGGG
TTACGACCAGTGCTGCCACAATCCCTCCACCCACACAAGATGTGCTGGGT
GGAGGTCATGCATATTTATTGATTCATACACCATTGTCAACAATGTCAAT
CACACGCACACGATTTCCTTGTCGCACGTAATTTCCCCGCTTGACAACAA
CAACCAGAAGCCATGCGGAGCTCCGTCATCGCGGTGGCTTGCCTCGTGGC
TGCCTGCGGCAGAACCCAGGCCTTTGTCCTTCCTAGCAAGTCTTCCTCCA
CAATCTCCTCCGCTCGACCGCAATCAAGAGCTCTGAGCAGCAGCACAGCC
CTGGCGGCGTTGTCCACCTCCATGCATGACCGGCGTGGCCTCCTCTTCAA
GACGACAGGGTCGTTGCTTGGGTTGGCCGGCCTGGCCTTGGTCCGCCCCG
CCAATGCCTATGACGAGGTGCCCCTCGTCCGTGACAAGTTGGGTGGGTTG
CTGGAACCGTACACGGATATTGCCAAGGTAAGGGGGAGGGGAGAAGGGTG
AAGGGGGTTTTGATACTGAAGGGGCAAGAGGGCGAAGAGGCGCTTGGCAA
GATAGATGAATCAACAGACTTGTTTTTTCGTTCATTCAATCTCTATGGCG
ATGGGTCTGAAGGAAAGACCTGAATAACGTGTGTCTCCCACGTGTCATCG
AGAGGCAAAGTGCTGATCTGAGGATGTCTTCTCTCCTCTGATTTTGGTTG
CGAAAAACAGTGAGTGTCTGTGGGGGAAAAAGCTGAAGATTTCCATGCGT
CAGATACTCAAGTCCTCGGTCTTTTGAAACAGAAAATTCTAAGGGTACAA
TCACATGCAAGCACTAAAAGGAACCCCTCCCCCACTTCATTCGCACACAT
ATCCGTACAGGGTCTCAAAGTCTCCCGCCCCTCCGGGTGGAACCAATTTG
ACGGCTCCCCCGAGACATACGTGGTAAAGTGGAGCGATATCATCAACCGC
GACGAGCTCGTCGTGTTGAACTCCACACCTGTCAAGGCATCCACCACTTC
CGTGGAAGCTCTGGGGGATGTCCAAGAAATTGGAAAAAAACTTGCGAAAG
GCCGCGGAGCCGAGCTGGTCGAGGCCAAGGCGAGGCTGACGGAGGGGGTA
TTGTTTTATGAGTTTGAGTTCAAGGGGGAGGCGATCTCGGAGTTGGCGTC
TTTGTGCGTGGCAAAGGGGCGACTGTGGAATCTGAGTGCGACGGCCGCGA
CAAAACGATGGGCGAAGAAGAGGGATTTGTTCAAGGGGGTGATTGGTTCC
TTCTTGCCTAAGCTCTAAGCAACGGGGGGAAGAAGCTGTGCCATTAAAGC
TATTCTTGTTTCTGATTTCAGTCTTGGAGTGTCTAGATTCGTGTATCTGT
GAGTGCAAGTTGAGTGAGCATCATCTTTGTCGTTGGAGTCTTTTAAAGGC
AAGCAGTACAATTCTTCAGGGGCCATGTCCCCCTCCAGAGGTAGGAAGCA
ATTAATCAATCGCAAAAACTTTTAAAAGATGCGCACGCACACAATGATAA
GGACGACTTATAGACGGGCATCGTACTTTCAAGATAAACATA
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Coding sequence (CDS) from alignment at chr1:799603..801394-

>NO01G03050.1 ID=NO01G03050.1|Name=NO01G03050.1|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at chr1:799603..801394- (Nannochloropsis oceanica)
ATGCGGAGCTCCGTCATCGCGGTGGCTTGCCTCGTGGCTGCCTGCGGCAG
AACCCAGGCCTTTGTCCTTCCTAGCAAGTCTTCCTCCACAATCTCCTCCG
CTCGACCGCAATCAAGAGCTCTGAGCAGCAGCACAGCCCTGGCGGCGTTG
TCCACCTCCATGCATGACCGGCGTGGCCTCCTCTTCAAGACGACAGGGTC
GTTGCTTGGGTTGGCCGGCCTGGCCTTGGTCCGCCCCGCCAATGCCTATG
ACGAGGTGCCCCTCGTCCGTGACAAGTTGGGTGGGTTGCTGGAACCGTAC
ACGGATATTGCCAAGGGTCTCAAAGTCTCCCGCCCCTCCGGGTGGAACCA
ATTTGACGGCTCCCCCGAGACATACGTGGTAAAGTGGAGCGATATCATCA
ACCGCGACGAGCTCGTCGTGTTGAACTCCACACCTGTCAAGGCATCCACC
ACTTCCGTGGAAGCTCTGGGGGATGTCCAAGAAATTGGAAAAAAACTTGC
GAAAGGCCGCGGAGCCGAGCTGGTCGAGGCCAAGGCGAGGCTGACGGAGG
GGGTATTGTTTTATGAGTTTGAGTTCAAGGGGGAGGCGATCTCGGAGTTG
GCGTCTTTGTGCGTGGCAAAGGGGCGACTGTGGAATCTGAGTGCGACGGC
CGCGACAAAACGATGGGCGAAGAAGAGGGATTTGTTCAAGGGGGTGATTG
GTTCCTTCTTGCCTAAGCTCTAA
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Synonyms
Publications