NO01G03020.1, NO01G03020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03020.1
Unique NameNO01G03020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1131
Alignment locationchr1:792286..793613 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:792286..793613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G03020.1 vs.
Match: EWM29227.1 (electron transfer flavoprotein [Nannochloropsis gaditana])

HSP 1 Score: 496.9 bits (1278), Expect = 5.100e-137
Identity = 272/346 (78.61%), Postives = 303/346 (87.57%), Query Frame = 0 
Query:    1 MLPPSLRRVAGPPRQLLRALTAAAAAGIRHASTLVVAEHSAAKGTLSASTLSTITAAGHFKGPITVLVAGGQGLDAVAKQAAQVVGISKVLVAEHAAYEKGLAENVSQVIVAAQNAGGYSHILAPSSMRSKNIIPRVAAMLDTQPVTDVIQIVDEATFVRPMYAGNAIATVKTSEALKLLTVRATAFDKAPATGGSAIMEAAPEVAAPDAGLSTFVSESVSQSARPELASARVVVSGGRGLKTKENFAMLETLADKLKGAVGASRAAVDEYHMPNELQVGQTGKVVAPDLYVAVGISGAIQHLSGMKDSKVIVAINKDKEAPIFQVADYGLVADLFQAVPELTEKV 347
            ML   L  V+  PR+ +  L +    G R ASTLVVAEHS +KGTLS STL TITAAG  + P+TVLVAGG+G++AVA+QAAQV G+SKVLVAEHAAYEKG+AEN+SQ +VA   AG YSHILAPSSMRSKN +PRVAA+LD+QP+TDVI I D+ATFVRPMYAGNAIATV TSE LK+LTVR TAF+KAP+TGGSA  E AP VA P+AGLS F+SESVSQSARPEL+SARVV+SGGRGLKTKE+F MLE LADKLKGAVGASRAAVDE+HMPNELQVGQTGKVVAPDLY+AVGISGAIQHLSGMKDSKVIVAINKDKEAPIFQVADYGLVADLFQAVPELT+KV
Sbjct:   66 MLRRPLLTVSAQPRRFVGVLMSRF--GTRDASTLVVAEHSESKGTLSPSTLCTITAAGQLQNPVTVLVAGGKGVNAVAQQAAQVPGVSKVLVAEHAAYEKGIAENLSQAVVATHKAGDYSHILAPSSMRSKNYVPRVAALLDSQPITDVIAIKDQATFVRPMYAGNAIATVTTSEPLKILTVRTTAFEKAPSTGGSAATEVAPAVAKPEAGLSAFLSESVSQSARPELSSARVVISGGRGLKTKEHFQMLEALADKLKGAVGASRAAVDEFHMPNELQVGQTGKVVAPDLYLAVGISGAIQHLSGMKDSKVIVAINKDKEAPIFQVADYGLVADLFQAVPELTDKV 409
The following BLAST results are available for this feature:
BLAST of NO01G03020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29227.15.100e-13778.61electron transfer flavoprotein [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03020NO01G03020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03020.1NO01G03020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03020.1.cds1NO01G03020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03020.1.cds2NO01G03020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03020.1 ID=NO01G03020.1|Name=NO01G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp
AGCACACAGGTTTCCTAACTGTCAAGGACTCCAAGCTTACATCTCGTCGT
CGTCGTCAGCGTCATCTCCTCAACTTAAGAACATGCTTCCGCCATCCCTG
AGGCGCGTGGCCGGGCCCCCGCGACAGCTGCTCCGTGCCTTGACGGCTGC
TGCAGCTGCCGGCATACGCCATGCCTCGACGTTGGTGGTGGCTGAGCACT
CGGCCGCCAAGGGCACTTTGAGCGCCAGTACGCTGAGCACCATCACGGCT
GCAGGCCACTTCAAGGGCCCCATCACAGTGCTGGTGGCGGGCGGACAAGG
ACTGGATGCCGTGGCCAAGCAGGCTGCTCAAGTGGTGGGCATCAGCAAGG
TTTTGGTTGCTGAACACGCAGCTTACGAGAAGGGCCTGGCAGAGAATGTA
AGCCAAGTCATTGTGGCTGCCCAAAACGCCGGCGGCTACTCCCACATTTT
GGCGCCGTCTTCCATGCGCTCCAAGAACATTATTCCCCGTGTGGCGGCTA
TGCTCGACACGCAACCGGTGACCGATGTCATTCAAATTGTCGACGAGGCG
ACATTTGTCCGACCGATGTATGCCGGCAATGCCATCGCGACAGTCAAAAC
CTCGGAGGCCCTCAAACTCCTCACTGTTCGTGCCACTGCATTTGACAAGG
CACCTGCCACGGGAGGGAGCGCCATTATGGAGGCAGCACCAGAGGTTGCT
GCTCCGGATGCTGGGTTGAGTACGTTTGTGAGCGAGAGTGTGAGCCAGTC
TGCTCGGCCAGAGCTGGCGTCGGCACGAGTGGTGGTCTCGGGCGGGCGAG
GGCTGAAGACGAAAGAAAATTTCGCAATGTTGGAGACGTTGGCAGACAAG
CTCAAGGGCGCAGTCGGTGCCTCGCGCGCAGCTGTCGATGAATACCACAT
GCCTAACGAGCTGCAAGTCGGTCAAACCGGTAAGGTGGTTGCCCCTGACC
TCTACGTGGCTGTAGGGATCTCAGGTGCAATTCAGCATCTGTCTGGCATG
AAGGACAGCAAGGTAATCGTGGCCATCAATAAGGATAAGGAGGCCCCCAT
TTTCCAAGTTGCGGACTATGGGTTGGTCGCTGATTTGTTTCAGGCGGTGC
CAGAGTTGACGGAAAAGGTCTAATGACGTGA
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protein sequence of NO01G03020.1

>NO01G03020.1-protein ID=NO01G03020.1-protein|Name=NO01G03020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MLPPSLRRVAGPPRQLLRALTAAAAAGIRHASTLVVAEHSAAKGTLSAST
LSTITAAGHFKGPITVLVAGGQGLDAVAKQAAQVVGISKVLVAEHAAYEK
GLAENVSQVIVAAQNAGGYSHILAPSSMRSKNIIPRVAAMLDTQPVTDVI
QIVDEATFVRPMYAGNAIATVKTSEALKLLTVRATAFDKAPATGGSAIME
AAPEVAAPDAGLSTFVSESVSQSARPELASARVVVSGGRGLKTKENFAML
ETLADKLKGAVGASRAAVDEYHMPNELQVGQTGKVVAPDLYVAVGISGAI
QHLSGMKDSKVIVAINKDKEAPIFQVADYGLVADLFQAVPELTEKV*
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mRNA from alignment at chr1:792286..793613+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03020.1 ID=NO01G03020.1|Name=NO01G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1328bp|location=Sequence derived from alignment at chr1:792286..793613+ (Nannochloropsis oceanica)
AGCACACAGGTTTCCTAACTGTCAAGGACTCCAAGCTTACATCTCGTCGT
CGTCGTCAGCGTCATCTCCTCAACTTAAGAACATGCTTCCGCCATCCCTG
AGGCGCGTGGCCGGGCCCCCGCGACAGCTGCTCCGTGCCTTGACGGCTGC
TGCAGCTGCCGGCATACGCCATGCCTCGACGTTGGTGGTGGCTGAGCACT
CGGCCGCCAAGGGCACTTTGAGCGCCAGTACGCTGAGCACCATCACGGCT
GCAGGCCACTTCAAGGGCCCCATCACAGTGCTGGTGGCGGGCGGACAAGG
ACTGGATGCCGTGGCCAAGCAGGCTGCTCAAGTGGTGGGCATCAGCAAGG
TTTTGGTTGCTGAACACGCAGCTTACGAGAAGGGCCTGGCAGAGAATGTA
AGCCAAGTCATTGTGGCTGCCCAAAACGCCGGCGGCTACTCCCACATTTT
GGCGCCGTCTTCCATGCGCTCCAAGAACATTATTCCCCGTGTGGCGGCTA
TGCTCGACACGCAACCGGTGACCGATGTCATTCAAATTGTCGACGAGGCG
ACATTTGTCCGACCGATGTATGCCGGCAATGCCATCGCGACAGTCAAAAC
CTCGGAGGCCCTCAAACTCCTCACTGTTCGTGCCACTGCATTTGACAAGG
CACCTGCCACGGGAGGGAGCGCCATTATGGAGGCAGCACCAGAGGTTGCT
GCTCCGGATGCTGGGTTGAGTACGTTTGTGAGCGAGAGTGTGAGCCAGTC
TGCTCGGCCAGAGCTGGCGTCGGCACGAGTGGTGGTCTCGGGCGGGCGAG
GGCTGAAGACGAAAGAAAATTTCGCAATGTTGGAGACGTTGGCAGACAAG
CTCAAGGGCGCAGGTATGTATAGACAGTCTTTGGGTCGTGTACTTTGTCG
TCCGCGTGTATCATGATTGGAATCCTGTGTTGATCTCGACGTGTGCAAGG
CACGCCCATTGCTCTGAACTCTTCCCTGTCCTCCTTCTGCGGCTCTTCCC
CTCCACATAAATACCTTCACCACTAATGTCCCTTCTCCCCTACCTCTCCT
CGCCCAACAGTCGGTGCCTCGCGCGCAGCTGTCGATGAATACCACATGCC
TAACGAGCTGCAAGTCGGTCAAACCGGTAAGGTGGTTGCCCCTGACCTCT
ACGTGGCTGTAGGGATCTCAGGTGCAATTCAGCATCTGTCTGGCATGAAG
GACAGCAAGGTAATCGTGGCCATCAATAAGGATAAGGAGGCCCCCATTTT
CCAAGTTGCGGACTATGGGTTGGTCGCTGATTTGTTTCAGGCGGTGCCAG
AGTTGACGGAAAAGGTCTAATGACGTGA
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Coding sequence (CDS) from alignment at chr1:792286..793613+

>NO01G03020.1 ID=NO01G03020.1|Name=NO01G03020.1|organism=Nannochloropsis oceanica|type=CDS|length=1041bp|location=Sequence derived from alignment at chr1:792286..793613+ (Nannochloropsis oceanica)
ATGCTTCCGCCATCCCTGAGGCGCGTGGCCGGGCCCCCGCGACAGCTGCT
CCGTGCCTTGACGGCTGCTGCAGCTGCCGGCATACGCCATGCCTCGACGT
TGGTGGTGGCTGAGCACTCGGCCGCCAAGGGCACTTTGAGCGCCAGTACG
CTGAGCACCATCACGGCTGCAGGCCACTTCAAGGGCCCCATCACAGTGCT
GGTGGCGGGCGGACAAGGACTGGATGCCGTGGCCAAGCAGGCTGCTCAAG
TGGTGGGCATCAGCAAGGTTTTGGTTGCTGAACACGCAGCTTACGAGAAG
GGCCTGGCAGAGAATGTAAGCCAAGTCATTGTGGCTGCCCAAAACGCCGG
CGGCTACTCCCACATTTTGGCGCCGTCTTCCATGCGCTCCAAGAACATTA
TTCCCCGTGTGGCGGCTATGCTCGACACGCAACCGGTGACCGATGTCATT
CAAATTGTCGACGAGGCGACATTTGTCCGACCGATGTATGCCGGCAATGC
CATCGCGACAGTCAAAACCTCGGAGGCCCTCAAACTCCTCACTGTTCGTG
CCACTGCATTTGACAAGGCACCTGCCACGGGAGGGAGCGCCATTATGGAG
GCAGCACCAGAGGTTGCTGCTCCGGATGCTGGGTTGAGTACGTTTGTGAG
CGAGAGTGTGAGCCAGTCTGCTCGGCCAGAGCTGGCGTCGGCACGAGTGG
TGGTCTCGGGCGGGCGAGGGCTGAAGACGAAAGAAAATTTCGCAATGTTG
GAGACGTTGGCAGACAAGCTCAAGGGCGCAGTCGGTGCCTCGCGCGCAGC
TGTCGATGAATACCACATGCCTAACGAGCTGCAAGTCGGTCAAACCGGTA
AGGTGGTTGCCCCTGACCTCTACGTGGCTGTAGGGATCTCAGGTGCAATT
CAGCATCTGTCTGGCATGAAGGACAGCAAGGTAATCGTGGCCATCAATAA
GGATAAGGAGGCCCCCATTTTCCAAGTTGCGGACTATGGGTTGGTCGCTG
ATTTGTTTCAGGCGGTGCCAGAGTTGACGGAAAAGGTCTAA
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Synonyms
Publications