NO01G03010.1, NO01G03010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G03010.1
Unique NameNO01G03010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1204
Alignment locationchr1:790760..792257 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:790760..792257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G03010.1 vs.
Match: EWM29228.1 (proteasome activator subunit 1 [Nannochloropsis gaditana])

HSP 1 Score: 376.7 bits (966), Expect = 5.300e-101
Identity = 193/239 (80.75%), Postives = 221/239 (92.47%), Query Frame = 0 
Query:    1 MASKSILDSYQQKLTDLRSSMPARIAELDAVLHSAPFGKSIAEIMAQSRASVASNPEVAGSLGVARDVLLRTVEDLGLVSTWLKLKVPKVSDGGNFGVAVVLEVVKTIEQKLDGLNKALDDLPSYFSERAGAVDKVVARTSTDIKESKSKSSSTGGKDGDETKGSESQSEEKSTKKNEALPDQLEHVVALDAKFFTIFKRDVELCQSAYLTCFDILEKNYTLLNAPRGDKGDSSHLSMF 240
            MA+K  L++YQ+K+ +LRS MPARIAE++AVL +APFGKS++E+M  SRA+VA+N EV+GSLG ARDVLLRTVEDL LV TWLKLKVPKVSDGGNFGVAV+LEVVKTIE K++ LNK LD+LP+YFSERA AV+K+VARTSTD+KESKSKSS+TGGKDGDETKGSESQ+EEKS KK+E LPDQLEH+VALDAKFFTIFKRDVELC SAYLTCFDILEKN+TLLNAPRGDKGDSSHLSMF
Sbjct:   82 MATKEFLETYQKKIMELRSVMPARIAEVEAVLQAAPFGKSVSEVMTHSRAAVAANAEVSGSLGTARDVLLRTVEDLHLVCTWLKLKVPKVSDGGNFGVAVILEVVKTIEGKIEVLNKGLDELPNYFSERASAVEKLVARTSTDVKESKSKSSTTGGKDGDETKGSESQTEEKSVKKSEFLPDQLEHLVALDAKFFTIFKRDVELCHSAYLTCFDILEKNFTLLNAPRGDKGDSSHLSMF 320
The following BLAST results are available for this feature:
BLAST of NO01G03010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29228.15.300e-10180.75proteasome activator subunit 1 [Nannochloropsis ga... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G03010NO01G03010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G03010.1NO01G03010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G03010.1.cds1NO01G03010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G03010.1.cds2NO01G03010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G03010.1 ID=NO01G03010.1|Name=NO01G03010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1204bp
CCCCTTTGTCTTCGAGGTACATGCATGCTAGTGGGTGTAGCGGTAGCCTT
GGACAAGCCGCTCTCGTGGTGCAATATGACATTGTCATCATCGCCAAACG
CCAACGGCTTGTCGCTCGAGCAACTCAAGAAGACTTCGACGAAGCATGTA
GCCAATTTTGTGCCGCCTTTACACCATTCTCACTCGCCGCATCCCCATAC
AATCCTCGGCACAGACGACCTTCATACCACACTCTAGAACATGGCGTCCA
AAAGCATCCTCGACTCCTATCAGCAAAAACTGACGGATCTCCGCAGCAGC
ATGCCCGCGCGCATCGCCGAGCTGGATGCCGTGCTCCATTCTGCCCCCTT
CGGTAAGAGCATTGCGGAAATTATGGCCCAGTCCCGTGCGTCTGTGGCCT
CGAATCCCGAGGTGGCTGGCTCCCTCGGTGTGGCCCGCGACGTGCTCCTG
CGTACGGTTGAAGACCTCGGCTTGGTTTCCACCTGGTTGAAGCTCAAGGT
GCCCAAGGTGAGCGATGGTGGCAACTTTGGCGTTGCTGTTGTGCTGGAGG
TGGTCAAGACGATTGAGCAGAAGCTGGACGGCTTGAACAAGGCCCTAGAC
GACCTTCCTTCCTATTTCTCAGAGCGCGCCGGCGCCGTTGACAAAGTGGT
GGCACGAACCTCCACGGACATTAAGGAGAGCAAGAGCAAGAGCAGCTCGA
CAGGGGGGAAGGACGGGGACGAGACCAAGGGCAGTGAGAGCCAGTCGGAA
GAGAAGTCCACCAAGAAGAACGAAGCTTTGCCTGACCAGCTCGAACACGT
CGTGGCATTGGATGCCAAATTCTTCACTATTTTTAAACGGGACGTGGAGT
TGTGCCAGTCCGCATACTTAACTTGCTTTGACATATTGGAGAAGAACTAT
ACTCTCCTCAATGCCCCCCGTGGGGATAAGGGCGATTCGTCCCACCTTAG
CATGTTCTAAACTTCCCCCCGTTAAAGAGTTATCGCGATTTGAAATATCT
CTGACATTTGGACAATTTATATTCATCACAGAGTGGATGATAGGCTGTTG
GGAGAGCGGCGAGTACAAGGACGTGTTGTAATAGCATGCGCCCGTGACGC
ACTAGAAGATGAAAGTGGGTGTGAGCGAGTACAAGGGGGCAACTGAGAAA
TTCAGAGAGACACCCGGCCGAAAGAATGCGAAAAAGAAGCACCCGATTTT
CGTG
back to top

protein sequence of NO01G03010.1

>NO01G03010.1-protein ID=NO01G03010.1-protein|Name=NO01G03010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MASKSILDSYQQKLTDLRSSMPARIAELDAVLHSAPFGKSIAEIMAQSRA
SVASNPEVAGSLGVARDVLLRTVEDLGLVSTWLKLKVPKVSDGGNFGVAV
VLEVVKTIEQKLDGLNKALDDLPSYFSERAGAVDKVVARTSTDIKESKSK
SSSTGGKDGDETKGSESQSEEKSTKKNEALPDQLEHVVALDAKFFTIFKR
DVELCQSAYLTCFDILEKNYTLLNAPRGDKGDSSHLSMF*
back to top

mRNA from alignment at chr1:790760..792257-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G03010.1 ID=NO01G03010.1|Name=NO01G03010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1498bp|location=Sequence derived from alignment at chr1:790760..792257- (Nannochloropsis oceanica)
CCCCTTTGTCTTCGAGGTACATGCATGCTAGTGGGTGTAGCGGTAGCCTT
GGACAAGCCGCTCTCGTGGTGCAATATGACATTGTCATCATCGCCAAACG
CCAACGGCTTGTCGCTCGAGCAACTCAAGAAGACTTCGACGAAGCATGTA
GCCAATTTTGTGCCGCCTTTACACCATTCTCACTCGCCGCATCCCCATAC
AATCCTCGGCACAGACGACCTTCATACCACACTCTAGAACATGGCGTCCA
AAAGCATCCTCGACTCCTATCAGGTAAATTGATTTTCGGTCCAACTCTTT
CTCTCCATTTCCTTCCCTACGCGCCAGGCAGTGTATGTGTATGAGCGGTG
GTGCGTGGGCGAGACTCTCCTACCCATGACGTACACAACGTATACAACGC
GCATGCTCGTCCATACAGGATGCACACCAAAGCGAGAGAGTGCAAGCCGA
ATCCCTCCATAAGTGCACCGTTCCTCGACTCTCTCAACTCCCTTGGCCAG
CATATCCCACCACCCAACCTGAGCATCAATATTCACCCGATATACACTCA
CCAAACGCAACCCACAGCAAAAACTGACGGATCTCCGCAGCAGCATGCCC
GCGCGCATCGCCGAGCTGGATGCCGTGCTCCATTCTGCCCCCTTCGGTAA
GAGCATTGCGGAAATTATGGCCCAGTCCCGTGCGTCTGTGGCCTCGAATC
CCGAGGTGGCTGGCTCCCTCGGTGTGGCCCGCGACGTGCTCCTGCGTACG
GTTGAAGACCTCGGCTTGGTTTCCACCTGGTTGAAGCTCAAGGTGCCCAA
GGTGAGCGATGGTGGCAACTTTGGCGTTGCTGTTGTGCTGGAGGTGGTCA
AGACGATTGAGCAGAAGCTGGACGGCTTGAACAAGGCCCTAGACGACCTT
CCTTCCTATTTCTCAGAGCGCGCCGGCGCCGTTGACAAAGTGGTGGCACG
AACCTCCACGGACATTAAGGAGAGCAAGAGCAAGAGCAGCTCGACAGGGG
GGAAGGACGGGGACGAGACCAAGGGCAGTGAGAGCCAGTCGGAAGAGAAG
TCCACCAAGAAGAACGAAGCTTTGCCTGACCAGCTCGAACACGTCGTGGC
ATTGGATGCCAAATTCTTCACTATTTTTAAACGGGACGTGGAGTTGTGCC
AGTCCGCATACTTAACTTGCTTTGACATATTGGAGAAGAACTATACTCTC
CTCAATGCCCCCCGTGGGGATAAGGGCGATTCGTCCCACCTTAGCATGTT
CTAAACTTCCCCCCGTTAAAGAGTTATCGCGATTTGAAATATCTCTGACA
TTTGGACAATTTATATTCATCACAGAGTGGATGATAGGCTGTTGGGAGAG
CGGCGAGTACAAGGACGTGTTGTAATAGCATGCGCCCGTGACGCACTAGA
AGATGAAAGTGGGTGTGAGCGAGTACAAGGGGGCAACTGAGAAATTCAGA
GAGACACCCGGCCGAAAGAATGCGAAAAAGAAGCACCCGATTTTCGTG
back to top

Coding sequence (CDS) from alignment at chr1:790760..792257-

>NO01G03010.1 ID=NO01G03010.1|Name=NO01G03010.1|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at chr1:790760..792257- (Nannochloropsis oceanica)
ATGGCGTCCAAAAGCATCCTCGACTCCTATCAGCAAAAACTGACGGATCT
CCGCAGCAGCATGCCCGCGCGCATCGCCGAGCTGGATGCCGTGCTCCATT
CTGCCCCCTTCGGTAAGAGCATTGCGGAAATTATGGCCCAGTCCCGTGCG
TCTGTGGCCTCGAATCCCGAGGTGGCTGGCTCCCTCGGTGTGGCCCGCGA
CGTGCTCCTGCGTACGGTTGAAGACCTCGGCTTGGTTTCCACCTGGTTGA
AGCTCAAGGTGCCCAAGGTGAGCGATGGTGGCAACTTTGGCGTTGCTGTT
GTGCTGGAGGTGGTCAAGACGATTGAGCAGAAGCTGGACGGCTTGAACAA
GGCCCTAGACGACCTTCCTTCCTATTTCTCAGAGCGCGCCGGCGCCGTTG
ACAAAGTGGTGGCACGAACCTCCACGGACATTAAGGAGAGCAAGAGCAAG
AGCAGCTCGACAGGGGGGAAGGACGGGGACGAGACCAAGGGCAGTGAGAG
CCAGTCGGAAGAGAAGTCCACCAAGAAGAACGAAGCTTTGCCTGACCAGC
TCGAACACGTCGTGGCATTGGATGCCAAATTCTTCACTATTTTTAAACGG
GACGTGGAGTTGTGCCAGTCCGCATACTTAACTTGCTTTGACATATTGGA
GAAGAACTATACTCTCCTCAATGCCCCCCGTGGGGATAAGGGCGATTCGT
CCCACCTTAGCATGTTCTAA
back to top
Synonyms
Publications