NO01G02970.1, NO01G02970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02970.1
Unique NameNO01G02970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1620
Alignment locationchr1:778533..780476 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:778533..780476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02970.1 vs.
Match: EWM29226.1 (zinc cchc domain containing 17 [Nannochloropsis gaditana])

HSP 1 Score: 332.8 bits (852), Expect = 2.000e-87
Identity = 262/529 (49.53%), Postives = 314/529 (59.36%), Query Frame = 0 
Query:   27 NRKLSKLRFYLGVAFLTQCRSPSPSHRWRYYSRSRS-SPRHRDDQRSGAVGRRGED--YGHGGSGGGRGAGAGGGGEGPGTLPTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQLREGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERDQARGGGGRGG-GGLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVEGKSYGLIGDDEFSALTRQLAAAPPPRPLPPSASYGGNGDGFGGGGAAGRGRGRALLTPAWMTKQGLSLD-------DATPARASSPPPPSSSSRRSRFTDAPAPAPPPPPLSSSSSSYDRRGDRGGLNGHGGVVSGGVGSGGGSTAALMAGRGRGRALTLPAWMTAGGGDGSGPVALEEGGLNQRGVKDASASRTKKKTSKRRSQSRGYDSGSSGRSDSRSRGGRKKKEKKKKHLKDKEREKEKKKGEKKKKHKHHRDSRSRSRGR-----RRSLSPAPKFRSASEARRILKAYEEKHGRK 540
            +R  SK RF+   +     R   PS R R +SRS S SP  R  +R      R ED      GSGG   A           +P +GKIYEGEVVK ESYGAFVRIPGFQRQGLVHISQL++GRTE+VDDV+ TGHKVFVKVVEV  +  G A +VSLSMRYA Q TG+DLDP NE  +RDQ RGGGG GG GGLQP GKIE+GA++N  C KC V GHMPFECRG+ +GKSYGLIGDDEF+ALTRQ      P  LP + +             AGRGRGRA+LTPAWM++QGLSL+       D     + S   P ++ R SRF +     P            D+RG  GGL G         G GGG     MAGRGRGR  TLPAWMT+G G  S P  + +     R     S+ R++ +  +RRS+ +         S  R R  R +  K+KKH KDK+R+K++KK + K KHKH   SRS SR R      RS S +PKFRS SEA R+L+AYE KH  K
Sbjct:   70 SRDRSKDRFFRKSSHSPDSR---PSRRRRGFSRSLSPSPERRQLERG-----RLEDKIIPQNGSGGLLNA-----------IPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNE--GGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDQQRGGGGGGGRGGLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLIGDDEFAALTRQ-PNQQKPSLLPLTTT-------------AGRGRGRAMLTPAWMSRQGLSLEGAKRPQPDLAALFSKSRASPPANDRPSRFQEPRLEMP----------RNDKRG--GGLRGSNAFER---GEGGGQGVVGMAGRGRGRGATLPAWMTSGAGP-SAPAEVVDIERRSR----ESSRRSEGRKDERRSRKK-----EDSESQKRKRSDRDENRKEKKHHKDKDRKKDRKKEKVKHKHKHEMRSRSHSRSRTRHRHSRSRSRSPKFRSTSEACRVLEAYERKHRHK 538
The following BLAST results are available for this feature:
BLAST of NO01G02970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29226.12.000e-8749.53zinc cchc domain containing 17 [Nannochloropsis ga... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02970NO01G02970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02970.1NO01G02970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02970.1.cds1NO01G02970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02970.1.cds2NO01G02970.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02970.1 ID=NO01G02970.1|Name=NO01G02970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1620bp
ATGACGGCATCCTCCTTTTCTTCCTTTAAAGCTCATTCCCACTACCACAG
CTTATCTTCAAAACAATTCACTACCACCAACAGGAAGCTAAGCAAGCTCC
GCTTTTATTTGGGTGTTGCCTTCCTGACGCAATGCCGCTCGCCCTCTCCA
TCCCATCGCTGGCGCTATTATTCCCGTTCCCGCTCTTCTCCTCGCCATCG
CGATGATCAACGATCTGGAGCAGTAGGAAGGAGAGGAGAAGATTACGGTC
ATGGAGGAAGTGGGGGAGGAAGGGGGGCAGGAGCAGGAGGAGGAGGTGAA
GGGCCGGGAACGCTGCCAACTGTAGGCAAAATATATGAAGGGGAGGTAGT
CAAGACTGAGTCGTATGGAGCTTTTGTGCGCATTCCCGGCTTTCAACGTC
AGGGACTCGTACACATCTCTCAATTACGCGAGGGACGAACGGAGAGAGTG
GATGACGTGGTAGTGACAGGCCATAAGGTCTTTGTCAAGGTGGTGGAGGT
GAAGGAGCAAGGGCCTGGCGAAGCATCCAAGGTCAGTTTATCGATGCGCT
ATGCCGACCAAAAAACAGGGGAGGACCTGGACCCGCACAACGAGAAATTT
GAGAGGGACCAAGCTCGAGGGGGAGGTGGACGGGGAGGAGGAGGGTTGCA
GCCACGCGGTAAGATTGAGTTGGGTGCGGTGATAAATAATAAGTGTGGCA
AGTGTGGGGTTATGGGACATATGCCGTTTGAATGTCGGGGGGTGGTGGAA
GGGAAAAGCTATGGATTGATTGGGGATGACGAGTTTTCGGCCTTGACCCG
ACAGCTTGCCGCGGCCCCACCTCCTCGCCCACTTCCCCCTTCCGCTTCTT
ATGGTGGTAATGGTGATGGCTTTGGTGGTGGAGGAGCGGCAGGTCGAGGA
CGCGGACGGGCACTCTTGACACCTGCGTGGATGACAAAACAGGGTTTGTC
GCTTGACGACGCTACTCCTGCACGGGCCTCGTCTCCTCCTCCTCCCTCGA
GCAGCAGCAGGCGTTCTCGTTTCACGGACGCACCGGCACCGGCACCGCCG
CCCCCACCTCTTTCTTCTTCATCTTCTTCTTATGACCGGCGTGGTGATCG
GGGGGGTTTGAATGGGCACGGTGGTGTCGTCAGTGGAGGTGTTGGGAGTG
GCGGTGGTAGTACGGCTGCGCTCATGGCCGGTCGCGGTCGGGGGCGTGCC
TTGACGCTCCCTGCGTGGATGACTGCTGGTGGTGGTGATGGTAGCGGTCC
TGTTGCTTTGGAGGAAGGCGGGTTGAACCAGCGCGGAGTGAAGGATGCCT
CGGCTTCGCGGACTAAGAAGAAGACGTCGAAGCGAAGAAGCCAGAGCAGG
GGTTATGATAGCGGGTCCAGTGGTCGAAGTGATTCGAGATCGCGGGGCGG
ACGCAAGAAGAAGGAGAAAAAGAAGAAGCACCTCAAGGACAAGGAAAGGG
AGAAGGAAAAGAAGAAGGGGGAGAAGAAGAAGAAGCACAAGCACCATCGG
GACAGCCGCAGTCGGAGCCGTGGCAGGCGTCGTTCGCTCTCTCCGGCACC
GAAGTTTCGTAGTGCCAGTGAGGCACGTCGCATTCTGAAGGCGTACGAAG
AGAAGCATGGGCGCAAATAG
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protein sequence of NO01G02970.1

>NO01G02970.1-protein ID=NO01G02970.1-protein|Name=NO01G02970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp
MTASSFSSFKAHSHYHSLSSKQFTTTNRKLSKLRFYLGVAFLTQCRSPSP
SHRWRYYSRSRSSPRHRDDQRSGAVGRRGEDYGHGGSGGGRGAGAGGGGE
GPGTLPTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQLREGRTERV
DDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKF
ERDQARGGGGRGGGGLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVE
GKSYGLIGDDEFSALTRQLAAAPPPRPLPPSASYGGNGDGFGGGGAAGRG
RGRALLTPAWMTKQGLSLDDATPARASSPPPPSSSSRRSRFTDAPAPAPP
PPPLSSSSSSYDRRGDRGGLNGHGGVVSGGVGSGGGSTAALMAGRGRGRA
LTLPAWMTAGGGDGSGPVALEEGGLNQRGVKDASASRTKKKTSKRRSQSR
GYDSGSSGRSDSRSRGGRKKKEKKKKHLKDKEREKEKKKGEKKKKHKHHR
DSRSRSRGRRRSLSPAPKFRSASEARRILKAYEEKHGRK*
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mRNA from alignment at chr1:778533..780476+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02970.1 ID=NO01G02970.1|Name=NO01G02970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1944bp|location=Sequence derived from alignment at chr1:778533..780476+ (Nannochloropsis oceanica)
ATGACGGCATCCTCCTTTTCTTCCTTTAAAGCTCATTCCCACTACCACAG
CTTATCTTCAAAACAATTCACTACCACCAACAGGAAGCTAAGCAAGCTCC
GCTTTTATTTGGGTGTTGCCTTCCTGACGCAATGGTAAGTATAGCTAGCA
TCTCGCATCCCTCTCCCTCGAAAATCGATACGTTCCTCAGCATCATCACA
AACCACGAGTCTCACGCCCGCCTACCTGCCAACCACCACGTCACAGCCGC
GCTCACGGTCTGTCTCTCGATCACCTCCCGCCAGAAGGAAGGGTACAACG
AGGCGTCGCTCATTTAGTGACGATGATAGCCGCAGTCCACCACCGAAGCG
AACTTTTAGGCGGAGGTCACGTTCTCGATCTCGGTCTGGTTACTCGCGCT
CTGCAAGACGCGACCGGAGCCGCAGTGGGGACCGTGACAATCGTCCCAAC
CACTACAGCCGCTCGCCCTCTCCATCCCATCGCTGGCGCTATTATTCCCG
TTCCCGCTCTTCTCCTCGCCATCGCGATGATCAACGATCTGGAGCAGTAG
GAAGGAGAGGAGAAGATTACGGTCATGGAGGAAGTGGGGGAGGAAGGGGG
GCAGGAGCAGGAGGAGGAGGTGAAGGGCCGGGAACGCTGCCAACTGTAGG
CAAAATATATGAAGGGGAGGTAGTCAAGACTGAGTCGTATGGAGCTTTTG
TGCGCATTCCCGGCTTTCAACGTCAGGGACTCGTACACATCTCTCAATTA
CGCGAGGGACGAACGGAGAGAGTGGATGACGTGGTAGTGACAGGCCATAA
GGTCTTTGTCAAGGTGGTGGAGGTGAAGGAGCAAGGGCCTGGCGAAGCAT
CCAAGGTCAGTTTATCGATGCGCTATGCCGACCAAAAAACAGGGGAGGAC
CTGGACCCGCACAACGAGAAATTTGAGAGGGACCAAGCTCGAGGGGGAGG
TGGACGGGGAGGAGGAGGGTTGCAGCCACGCGGTAAGATTGAGTTGGGTG
CGGTGATAAATAATAAGTGTGGCAAGTGTGGGGTTATGGGACATATGCCG
TTTGAATGTCGGGGGGTGGTGGAAGGGAAAAGCTATGGATTGATTGGGGA
TGACGAGTTTTCGGCCTTGACCCGACAGCTTGCCGCGGCCCCACCTCCTC
GCCCACTTCCCCCTTCCGCTTCTTATGGTGGTAATGGTGATGGCTTTGGT
GGTGGAGGAGCGGCAGGTCGAGGACGCGGACGGGCACTCTTGACACCTGC
GTGGATGACAAAACAGGGTTTGTCGCTTGACGACGCTACTCCTGCACGGG
CCTCGTCTCCTCCTCCTCCCTCGAGCAGCAGCAGGCGTTCTCGTTTCACG
GACGCACCGGCACCGGCACCGCCGCCCCCACCTCTTTCTTCTTCATCTTC
TTCTTATGACCGGCGTGGTGATCGGGGGGGTTTGAATGGGCACGGTGGTG
TCGTCAGTGGAGGTGTTGGGAGTGGCGGTGGTAGTACGGCTGCGCTCATG
GCCGGTCGCGGTCGGGGGCGTGCCTTGACGCTCCCTGCGTGGATGACTGC
TGGTGGTGGTGATGGTAGCGGTCCTGTTGCTTTGGAGGAAGGCGGGTTGA
ACCAGCGCGGAGTGAAGGATGCCTCGGCTTCGCGGACTAAGAAGAAGACG
TCGAAGCGAAGAAGCCAGAGCAGGGGTTATGATAGCGGGTCCAGTGGTCG
AAGTGATTCGAGATCGCGGGGCGGACGCAAGAAGAAGGAGAAAAAGAAGA
AGCACCTCAAGGACAAGGAAAGGGAGAAGGAAAAGAAGAAGGGGGAGAAG
AAGAAGAAGCACAAGCACCATCGGGACAGCCGCAGTCGGAGCCGTGGCAG
GCGTCGTTCGCTCTCTCCGGCACCGAAGTTTCGTAGTGCCAGTGAGGCAC
GTCGCATTCTGAAGGCGTACGAAGAGAAGCATGGGCGCAAATAG
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Coding sequence (CDS) from alignment at chr1:778533..780476+

>NO01G02970.1 ID=NO01G02970.1|Name=NO01G02970.1|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at chr1:778533..780476+ (Nannochloropsis oceanica)
ATGACGGCATCCTCCTTTTCTTCCTTTAAAGCTCATTCCCACTACCACAG
CTTATCTTCAAAACAATTCACTACCACCAACAGGAAGCTAAGCAAGCTCC
GCTTTTATTTGGGTGTTGCCTTCCTGACGCAATGCCGCTCGCCCTCTCCA
TCCCATCGCTGGCGCTATTATTCCCGTTCCCGCTCTTCTCCTCGCCATCG
CGATGATCAACGATCTGGAGCAGTAGGAAGGAGAGGAGAAGATTACGGTC
ATGGAGGAAGTGGGGGAGGAAGGGGGGCAGGAGCAGGAGGAGGAGGTGAA
GGGCCGGGAACGCTGCCAACTGTAGGCAAAATATATGAAGGGGAGGTAGT
CAAGACTGAGTCGTATGGAGCTTTTGTGCGCATTCCCGGCTTTCAACGTC
AGGGACTCGTACACATCTCTCAATTACGCGAGGGACGAACGGAGAGAGTG
GATGACGTGGTAGTGACAGGCCATAAGGTCTTTGTCAAGGTGGTGGAGGT
GAAGGAGCAAGGGCCTGGCGAAGCATCCAAGGTCAGTTTATCGATGCGCT
ATGCCGACCAAAAAACAGGGGAGGACCTGGACCCGCACAACGAGAAATTT
GAGAGGGACCAAGCTCGAGGGGGAGGTGGACGGGGAGGAGGAGGGTTGCA
GCCACGCGGTAAGATTGAGTTGGGTGCGGTGATAAATAATAAGTGTGGCA
AGTGTGGGGTTATGGGACATATGCCGTTTGAATGTCGGGGGGTGGTGGAA
GGGAAAAGCTATGGATTGATTGGGGATGACGAGTTTTCGGCCTTGACCCG
ACAGCTTGCCGCGGCCCCACCTCCTCGCCCACTTCCCCCTTCCGCTTCTT
ATGGTGGTAATGGTGATGGCTTTGGTGGTGGAGGAGCGGCAGGTCGAGGA
CGCGGACGGGCACTCTTGACACCTGCGTGGATGACAAAACAGGGTTTGTC
GCTTGACGACGCTACTCCTGCACGGGCCTCGTCTCCTCCTCCTCCCTCGA
GCAGCAGCAGGCGTTCTCGTTTCACGGACGCACCGGCACCGGCACCGCCG
CCCCCACCTCTTTCTTCTTCATCTTCTTCTTATGACCGGCGTGGTGATCG
GGGGGGTTTGAATGGGCACGGTGGTGTCGTCAGTGGAGGTGTTGGGAGTG
GCGGTGGTAGTACGGCTGCGCTCATGGCCGGTCGCGGTCGGGGGCGTGCC
TTGACGCTCCCTGCGTGGATGACTGCTGGTGGTGGTGATGGTAGCGGTCC
TGTTGCTTTGGAGGAAGGCGGGTTGAACCAGCGCGGAGTGAAGGATGCCT
CGGCTTCGCGGACTAAGAAGAAGACGTCGAAGCGAAGAAGCCAGAGCAGG
GGTTATGATAGCGGGTCCAGTGGTCGAAGTGATTCGAGATCGCGGGGCGG
ACGCAAGAAGAAGGAGAAAAAGAAGAAGCACCTCAAGGACAAGGAAAGGG
AGAAGGAAAAGAAGAAGGGGGAGAAGAAGAAGAAGCACAAGCACCATCGG
GACAGCCGCAGTCGGAGCCGTGGCAGGCGTCGTTCGCTCTCTCCGGCACC
GAAGTTTCGTAGTGCCAGTGAGGCACGTCGCATTCTGAAGGCGTACGAAG
AGAAGCATGGGCGCAAATAG
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Synonyms
Publications