NO01G02920.4, NO01G02920.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02920.4
Unique NameNO01G02920.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2464
Alignment locationchr1:760621..763828 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:760621..763828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02920.4 vs.
Match: CBJ29506.1 (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 141.4 bits (355), Expect = 3.800e-30
Identity = 87/205 (42.44%), Postives = 125/205 (60.98%), Query Frame = 0 
Query:   35 GLYRDVEAADRQCNELEKVVALVENHRQRFRHIDNNELAERRAFVTRTKQSLVKVWNNLKSDHVKGKMSNDERDFQRSRPYDGSAMGHPTAAGRGGVGGGANGAFIDEQRSRQHLMLQEQDQGLEELGTAVDRVGRMADAMNQELNAQNRMLGDLEVEVENTNEQMNFVMGRLSKLLKTKDKYQLWLIIFLTVVLIVLIILTIYV 240
            GL ++V+ AD Q  +L + V  VEN+R  F HIDN EL+ER+ F++ +KQ L++  + L     K KM+ D+R         G  +G  T   R       N   I + +SR  + L  QD+ LEELGT V+RVG  A  +N+EL +QNR+L  L+ +++   E MNFVMGRL KLLKTK K Q+W I+ L+ +LI+L+++ IYV
Sbjct:   54 GLTKEVKGADAQLRDLRRTVEYVENNRDSFAHIDNAELSERKTFLSDSKQVLLRASDALDGQQTKEKMAQDDRSEMAKYRSKGD-LGARTEVERD------NTEHILDHQSRVRMQLARQDEDLEELGTHVERVGETATVINEELRSQNRLLTALDDDMDEATESMNFVMGRLGKLLKTKSKCQIWTILLLSFILIILVLMLIYV 251
The following BLAST results are available for this feature:
BLAST of NO01G02920.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ29506.13.800e-3042.44Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02920NO01G02920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02920.4NO01G02920.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02920.4.cds1NO01G02920.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02920.4.cds2NO01G02920.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02920.4.cds3NO01G02920.4.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02920.4.cds4NO01G02920.4.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02920.4.cds5NO01G02920.4.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02920.4 ID=NO01G02920.4|Name=NO01G02920.4|organism=Nannochloropsis oceanica|type=mRNA|length=2464bp
AGACTGCTGCGTCGTACTTTGGATAATCGAAATGGCTGCGCAGGACCCAT
TTTTCGCAGCCCGAGAGTAAGTGACTGGCATGAGGGTTGGTTGAGAGGTT
GTCTTCGTCCGGTTTGCATGAAACATCATATGCAGGCAATAACTGGCACA
AGCAATAGTGTGCGGGAGGCTGGCTGGGATTTCGGCGCTCCTGTAGTCGC
CCTGCTTTTTGACGTATCAGAACACGGGGGAGGGAGGGAGGGAGGCCCAT
TTACTCGGCACCCTTGCCGTGGCACCGTCGACGTATAAGACCAGAGGAAA
GAATGAGGGTGGCTGGTGATATTATTTTCGTTCCGCTCTTAAGCGGTCGG
AGGAAGTGTATCGCGGAGGAAGCAGAGAGAGGGGCGTCCTTGCTCATTCC
CGTCTGATTTACTTACTCGACGTCACTCACACATCAACAGGGAGTTGCGA
GGCAAGGCAGACTACATCCACGCCCGGCATGAAAAGCTATTACGGCTCTT
GAAGGCCACAAATACTGCCAGCGACCCAGGATTTAAGGCGCTGTACGCCT
GTACGTAGGGCGAGCTAGCTACCGGAGAGAGGGCTCGGGCGGTGGGAGGG
TAGCCTGGACCTATCCACTCCTTCTCTCGTGCACAAACTAAGCTATGAAT
GCAGGGATTGAAAGAAAAACGGTATTTTTCAGTTGTTGCTATTGGTTTTC
CTACAAGCACGAACTCAACACGGTCATGCATCCTCTCATTCTTGTAGGCT
TGTACCGGGACGTGGAGGCGGCAGATAGGCAGTGCAACGAGTTGGAGAAG
GTCGTGGCCTTGGTAGAGAACCACCGCCAGCGCTTCCGACATATTGACAA
TAACGAGTTAGCGGAGCGCCGGGCTTTCGTGACACGGACGAAGCAGTCAC
TGGTGAAAGTCTGGAACAACTTGAAGAGCGACCACGTCAAGGGCAAGATG
AGCAACGACGAGAGGGACTTCCAACGCAGCCGCCCATACGATGGCAGCGC
GATGGGCCACCCAACGGCGGCCGGCAGGGGAGGAGTTGGAGGAGGGGCTA
ACGGGGCGTTTATTGACGAGCAGCGCTCTAGGCAACATCTGATGCTGCAG
GAGCAAGACCAAGGGTTGGAAGAGCTAGGCACGGCAGTGGACCGAGTGGG
GCGGATGGCTGATGCCATGAATCAGGAGTTGAATGCGCAGAATCGGATGT
TAGGGGATTTAGAGGTGGAGGTGGAGAATACGAACGAGCAGATGAATTTT
GTCATGGGCAGGCTGAGTAAGCTGTTGAAGACGAAAGACAAGTACCAGCT
GTGGCTCATCATCTTTTTGACGGTGGTACTGATTGTCCTCATCATCCTCA
CGATATACGTTTAAAGCAAAATTGGAGCAGCCACCACATAGGCTACTCAA
TTGTGTCGTCATCTGCATCTATTCCGTGGGCTCTCAGTGTGTGGGTGGGT
TGCCACCTTCTGGGAGGCGGGACGGAGGGCGCATGGAGGGGCGGGTCTTT
AAACGATCGAATGCGTGTATGTGTGCAGGTGTCTTTATATGTACAGACGG
GGACCAAAGAAGAAAAAAGAGATATTCTCGCACACTAAAACAAAGCAAAG
CTGATATATTAGAGTAAGTGATAGAAGGAGAAGACGAAGAAGAAGAAGAA
GAGGAAGGTGAAGGAAGATGAAGGAAAAGAAGCAACACCAATTAATGTTC
TAAGTGAGAGGGCAAGCGATCAACCCAAATGCCTCTCGTTCCTTCTTTCT
TCTTTTACCATTTGTCTTTGTATATTCACAGACAGCTACAAACAGATAGA
AATAGACTACTGATAGACTTGACACTTTTTCCAGTTTTCACGTACAAACC
GAATCTCCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTATCTATCTCTATCTATCTATCTACCTATCTATCTATCTATTTACCT
CACATATTACACCACCCACAGCGCAATTCCTCTACTCCCCTTCCCCCCTT
CTTTTCCTCCCTCCCTCTTCACCCTCCCCCTGACTGCAAGGGCTTGAGTC
CTGACCCCAATTCAATAGCCCGCCCCACATTCAGTACAGTGGCATCCTCC
CATCGTCTTCCAACCACTTGCACGCCAATCGGCAACCCCCCATTCCCCTT
CTTGCCCGCCCTTCCGGAGGACGACGAAGCGGGGGAAGAAACCCCAGCAT
TAACGCTCAAGGCCGGGTGGCCGGTTAGATCAAACGCCGCAATGTTCTGG
AGTGCGGCCCAGGCATGCGTGATGCCCTAAAAAAGGAGCACGGGAGAGAC
GCAAGAAGATAAGGGATGATGAGTGCAAGGACTTCAATTCAGGGAGAAAG
GGAAAGGGAGAGAGGGGAAAGGACGGATTTAACCCTCGTGGGGTCCTTCC
AGCCGGTGGCATGAGCTTGGGCTTGGTGGGCGGGCATGGGATGAGAAAGG
GAAGGAGGGAGGGA
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protein sequence of NO01G02920.4

>NO01G02920.4-protein ID=NO01G02920.4-protein|Name=NO01G02920.4|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MNAGIERKTVFFSCCYWFSYKHELNTVMHPLILVGLYRDVEAADRQCNEL
EKVVALVENHRQRFRHIDNNELAERRAFVTRTKQSLVKVWNNLKSDHVKG
KMSNDERDFQRSRPYDGSAMGHPTAAGRGGVGGGANGAFIDEQRSRQHLM
LQEQDQGLEELGTAVDRVGRMADAMNQELNAQNRMLGDLEVEVENTNEQM
NFVMGRLSKLLKTKDKYQLWLIIFLTVVLIVLIILTIYV*
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mRNA from alignment at chr1:760621..763828-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02920.4 ID=NO01G02920.4|Name=NO01G02920.4|organism=Nannochloropsis oceanica|type=mRNA|length=3208bp|location=Sequence derived from alignment at chr1:760621..763828- (Nannochloropsis oceanica)
AGACTGCTGCGTCGTACTTTGGATAATCGAAATGGCTGCGCAGGACCCAT
TTTTCGCAGCCCGAGAGTAAGTGACTGGCATGAGGGTTGGTTGAGAGGTT
GTCTTCGTCCGGTTTGCATGAAACATCATATGCAGGCAATAACTGGCACA
AGCAATAGTGTGCGGGAGGCTGGCTGGGATTTCGGCGCTCCTGTAGTCGC
CCTGCTTTTTGACGTATCAGAACACGGGGGAGGGAGGGAGGGAGGCCCAT
TTACTCGGCACCCTTGCCGTGGCACCGTCGACGTATAAGACCAGAGGAAA
GAATGAGGGTGGCTGGTGATATTATTTTCGTTCCGCTCTTAAGCGGTCGG
AGGAAGTGTATCGCGGAGGAAGCAGAGAGAGGGGCGTCCTTGCTCATTCC
CGTCTGATTTACTTACTCGACGTCACTCACACATCAACAGGGAGTTGCGA
GGCAAGGCAGACTACATCCACGCCCGGCATGAAAAGCTATTACGGCTCTT
GAAGGCCACAAATACTGCCAGCGACCCAGGATTTAAGGCGCTGTACGCCT
GTACGTAGGGCGAGCTAGCTACCGGAGAGAGGGCTCGGGCGGTGGGAGGG
TAGCCTGGACCTATCCACTCCTTCTCTCGTGCACAAACTAAGCTATGAAT
GCAGGGATTGAAAGAAAAACGGTATTTTTCAGTTGTTGCTATTGGTTTTC
CTACAAGCACGAACTCAACACGGTCATGCATCCTCTCATTCTTGTAGGCT
TGTACCGGGACGTGGAGGCGGCAGATAGGCAGTGCAACGAGTTGGAGAAG
GTCGTGGCCTTGGTAGAGAACCACCGCCAGCGCTTCCGACATATTGACAA
TGTGAGTGAGTGAGGATAAAGGGCAAGATATAGCTTGGATACAGGGAAGC
GAGCAAGAGGTGCCAAGGGCGAGATCTTCACGAATGAAGAAACATGGCTA
GCTTTTCCTCATGTCCTCCTTCCACACGGACACACATACACCTACAGAAC
GAGTTAGCGGAGCGCCGGGCTTTCGTGACACGGACGAAGCAGTCACTGGT
GAAAGTCTGGAACAACTTGAAGAGCGACCACGTCAAGGGCAAGATGAGCA
ACGACGAGAGGGACGTAAGTGTCTTGTGAGAGTCGGTGGGGCTGGAGGGA
AAGGAGAAATATTGGGAAACCGAATTTGATCCATCAACGATACCGAGCTG
TGTGTGAAGAAAGACCAACGCTCCTCATATATTTAATTCTCGCTCCCAAA
TCTCTCCTTTCCTCTTTTATATCTTCTGCATACAGTTCCAACGCAGCCGC
CCATACGATGGCAGCGCGATGGGCCACCCAACGGCGGCCGGCAGGGGAGG
AGTTGGAGGAGGGGCTAACGGGGCGTTTATTGACGAGCAGCGCTCTAGGC
AACATGTAAGAGCTCGGAGGGGTAGGAGGGGATTGGGGCAGGAGAGAGGG
ATGGGGAGAGTGGTGCCAGGGGGATGAAGTCGCTGAGCCAATGGCGAGTT
CAACGACAAACATCGTGCCAGACAACGTGTGAAGGAAAGATGGGGGGGTC
CCTCAAGGAGGGGGAGAAGATGGAAGGAGGGGGGAACCTAAGGAGGGGGA
GAAGAGGGGAAGAGACGATTAAAGACGGGAAGGCCCTGCTCGCCTGGAGG
AGCATGCGTCTTATTCTCTTTCCCTTTCACACGTCCCAGCTGATGCTGCA
GGAGCAAGACCAAGGGTTGGAAGAGCTAGGCACGGCAGTGGACCGAGTGG
GGCGGATGGCTGATGCCATGAATCAGGAGTTGAATGCGCAGAATCGGATG
TTAGGGGATTTAGAGGTGGAGGTGGAGAATACGAACGAGCAGATGAATTT
TGTCATGGGCAGGCTGAGTAAGCTGTTGAAGACGAAAGGTAAGTTCGAAC
TTGGCAAGACTGGGGGTGGGGTCGGGGGGGAGGTTTTGGGGATGAGTTTT
AAGATGACACATTTTATCGATTCTAATTGCATTTTTATTTTTATTTTAAA
TTTCCTCGCATGCACACACGCACACACACAGACAAGTACCAGCTGTGGCT
CATCATCTTTTTGACGGTGGTACTGATTGTCCTCATCATCCTCACGATAT
ACGTTTAAAGCAAAATTGGAGCAGCCACCACATAGGCTACTCAATTGTGT
CGTCATCTGCATCTATTCCGTGGGCTCTCAGTGTGTGGGTGGGTTGCCAC
CTTCTGGGAGGCGGGACGGAGGGCGCATGGAGGGGCGGGTCTTTAAACGA
TCGAATGCGTGTATGTGTGCAGGTGTCTTTATATGTACAGACGGGGACCA
AAGAAGAAAAAAGAGATATTCTCGCACACTAAAACAAAGCAAAGCTGATA
TATTAGAGTAAGTGATAGAAGGAGAAGACGAAGAAGAAGAAGAAGAGGAA
GGTGAAGGAAGATGAAGGAAAAGAAGCAACACCAATTAATGTTCTAAGTG
AGAGGGCAAGCGATCAACCCAAATGCCTCTCGTTCCTTCTTTCTTCTTTT
ACCATTTGTCTTTGTATATTCACAGACAGCTACAAACAGATAGAAATAGA
CTACTGATAGACTTGACACTTTTTCCAGTTTTCACGTACAAACCGAATCT
CCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAT
CTATCTCTATCTATCTATCTACCTATCTATCTATCTATTTACCTCACATA
TTACACCACCCACAGCGCAATTCCTCTACTCCCCTTCCCCCCTTCTTTTC
CTCCCTCCCTCTTCACCCTCCCCCTGACTGCAAGGGCTTGAGTCCTGACC
CCAATTCAATAGCCCGCCCCACATTCAGTACAGTGGCATCCTCCCATCGT
CTTCCAACCACTTGCACGCCAATCGGCAACCCCCCATTCCCCTTCTTGCC
CGCCCTTCCGGAGGACGACGAAGCGGGGGAAGAAACCCCAGCATTAACGC
TCAAGGCCGGGTGGCCGGTTAGATCAAACGCCGCAATGTTCTGGAGTGCG
GCCCAGGCATGCGTGATGCCCTAAAAAAGGAGCACGGGAGAGACGCAAGA
AGATAAGGGATGATGAGTGCAAGGACTTCAATTCAGGGAGAAAGGGAAAG
GGAGAGAGGGGAAAGGACGGATTTAACCCTCGTGGGGTCCTTCCAGCCGG
TGGCATGAGCTTGGGCTTGGTGGGCGGGCATGGGATGAGAAAGGGAAGGA
GGGAGGGA
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Coding sequence (CDS) from alignment at chr1:760621..763828-

>NO01G02920.4 ID=NO01G02920.4|Name=NO01G02920.4|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at chr1:760621..763828- (Nannochloropsis oceanica)
ATGAATGCAGGGATTGAAAGAAAAACGGTATTTTTCAGTTGTTGCTATTG
GTTTTCCTACAAGCACGAACTCAACACGGTCATGCATCCTCTCATTCTTG
TAGGCTTGTACCGGGACGTGGAGGCGGCAGATAGGCAGTGCAACGAGTTG
GAGAAGGTCGTGGCCTTGGTAGAGAACCACCGCCAGCGCTTCCGACATAT
TGACAATAACGAGTTAGCGGAGCGCCGGGCTTTCGTGACACGGACGAAGC
AGTCACTGGTGAAAGTCTGGAACAACTTGAAGAGCGACCACGTCAAGGGC
AAGATGAGCAACGACGAGAGGGACTTCCAACGCAGCCGCCCATACGATGG
CAGCGCGATGGGCCACCCAACGGCGGCCGGCAGGGGAGGAGTTGGAGGAG
GGGCTAACGGGGCGTTTATTGACGAGCAGCGCTCTAGGCAACATCTGATG
CTGCAGGAGCAAGACCAAGGGTTGGAAGAGCTAGGCACGGCAGTGGACCG
AGTGGGGCGGATGGCTGATGCCATGAATCAGGAGTTGAATGCGCAGAATC
GGATGTTAGGGGATTTAGAGGTGGAGGTGGAGAATACGAACGAGCAGATG
AATTTTGTCATGGGCAGGCTGAGTAAGCTGTTGAAGACGAAAGACAAGTA
CCAGCTGTGGCTCATCATCTTTTTGACGGTGGTACTGATTGTCCTCATCA
TCCTCACGATATACGTTTAA
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Synonyms
Publications