NO01G02900.1, NO01G02900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02900.1
Unique NameNO01G02900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1956
Alignment locationchr1:756295..758369 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:756295..758369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G02900.1 vs.
Match: EWM29147.1 (anion exchanger family [Nannochloropsis gaditana])

HSP 1 Score: 845.9 bits (2184), Expect = 8.400e-242
Identity = 464/641 (72.39%), Postives = 505/641 (78.78%), Query Frame = 0
Query:    9 GGVALALFSAYPAHSFCYSRFSLPVVDRTTLSSASPSSSISSSSPFSGRSLPSSRGGNARTYGEPLRVSMPFHIRFSTGVAMPPDDSPSSYSSSSRSSSTASLYSAPTSSSSPSSFPALPSRGWRIEWFKGLREDIANRRPLYKSDWTDGMKVKTIPTILFLYFACLAPAVAFGGISYGLTQGAMGVIEFLLSCGVSGMLYAIFSGQPMTFIGPTGLTLCFMAALFNFCNSFGLAFMPMYTWVGIWTSLMLVTLSSANACLLTKHCTRFTDEVFNALLALNFTYEALKNIVVRFFSTGTDKTQPFLALNMALATFALSQRLVSYRSSILFTRRIRGFLSDFGPALTIIIMTLLGSLPMVRGLGIEYLKAPKRFQFGNGRRLFVPLWDLPVWARGLALVPAAALTVLFFLDHNISVRVVNSPDNKMKKSPAYHLDLFVLGSIVFLCSIVGLPWMCAATIQSLNHVRSVTEYEPVGVGEGGKGGGTAAVVVSGSGGGKGDVKQEEEETATVMETRLTGLGIHALVLSSIGLLPLLRRIPIPVISGIFLYLGRTVMTGNTFLQRVKGAFFDKSMLPEDSPFKRLGRTTVNKFTAIQVGCLAVLWTLKSNPATGMFFPSVIGMLILTRILVIPRLFSKEEISVLD 650
            G +AL + S     +FC  R + P+V  T+     P SS  + SP     L    G    +        MPF++RF          +P +         T+S   AP SS + S       +  RIEWF+G+RED +NR PLYKSDW DG+K KT+PTILFLYFACLAPAVAFGGISYGLTQGAMGVIEFL+SCG+SGMLYAIFSGQPMTFIGPTGLTLCFMAALFNFC+SFG+AFMPMYTWVGIWTSLML  LSSANAC LTKHCTRFTDEVFNALLALNF YEALKNI VRFF+TGTDKTQP LALNMALATFALSQRLVSYRSSILFT RIR FLSDFGPALTIIIMT +GSLPMV  LGIEYLKAPKRFQ GNGR   VPLWDLP+WARGLAL+PAA LT+LFFLDHNISVRVVNSPDNKMKKSPAYHLDL VLGSIV LCS++GLPWMCAATIQSLNHVRSVT+Y P              V VS S GG      E++ T  VMETRLTGLGIHA+VL SIGLLPLLRRIP PVISGIFLYLGRTVMTGNTFLQR+KGAFFDKSML  DSPFK LGR TVNK+T+IQ+GCLAVLW LKSNPATGMFFPSVIG+LILTRILVIPRLFSK EI+VLD
Sbjct:   60 GAMALVVLSTTMVDAFCSYRLT-PMVAGTSRRGVLPRSSPPTLSPQRDPRLVWMAGCPGHSDAH-----MPFYVRFRA--------NPVTQFEGMDMPLTSSSALAPGSSRAQS-------KTRRIEWFRGIREDFSNRLPLYKSDWVDGVKGKTLPTILFLYFACLAPAVAFGGISYGLTQGAMGVIEFLVSCGMSGMLYAIFSGQPMTFIGPTGLTLCFMAALFNFCSSFGVAFMPMYTWVGIWTSLMLGLLSSANACSLTKHCTRFTDEVFNALLALNFIYEALKNIAVRFFTTGTDKTQPLLALNMALATFALSQRLVSYRSSILFTHRIREFLSDFGPALTIIIMTFVGSLPMVSSLGIEYLKAPKRFQLGNGRSWLVPLWDLPLWARGLALIPAAFLTILFFLDHNISVRVVNSPDNKMKKSPAYHLDLLVLGSIVLLCSLLGLPWMCAATIQSLNHVRSVTDYVP----------APGPVTVSESKGG----PDEQQRTTYVMETRLTGLGIHAMVLCSIGLLPLLRRIPTPVISGIFLYLGRTVMTGNTFLQRIKGAFFDKSMLAADSPFKILGRATVNKYTSIQMGCLAVLWCLKSNPATGMFFPSVIGLLILTRILVIPRLFSKGEIAVLD 665          
The following BLAST results are available for this feature:
BLAST of NO01G02900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29147.18.400e-24272.39anion exchanger family [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02900NO01G02900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02900.1NO01G02900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02900.1.cds1NO01G02900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02900.1.cds2NO01G02900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02900.1 ID=NO01G02900.1|Name=NO01G02900.1|organism=Nannochloropsis oceanica|type=mRNA|length=1956bp
ATGCTATCCAAACGCCAGCTTACGGGAGGCGTAGCGCTAGCACTATTCAG
CGCGTATCCGGCACACTCCTTCTGTTACTCCCGTTTCAGTTTGCCAGTTG
TGGATAGAACGACTCTCTCCTCCGCCTCCCCCTCCTCCTCCATTTCCTCC
TCCTCCCCTTTCTCTGGCAGATCGCTACCAAGCAGTCGCGGCGGCAACGC
ACGCACGTATGGAGAGCCTCTACGTGTCTCGATGCCCTTTCACATAAGGT
TTAGTACCGGTGTAGCCATGCCACCGGACGACTCTCCCTCCTCCTATTCC
TCCTCATCCCGGTCATCATCCACCGCTTCCCTCTACTCAGCCCCCACCTC
CTCCTCTTCCCCCTCCTCTTTCCCCGCCTTGCCCAGCCGAGGATGGAGAA
TAGAATGGTTTAAGGGCCTCAGGGAGGACATTGCCAATCGTAGGCCGCTC
TATAAATCGGATTGGACCGATGGAATGAAAGTAAAGACGATTCCGACCAT
CCTCTTTTTATACTTTGCCTGTTTGGCTCCTGCGGTTGCATTTGGAGGGA
TCAGCTATGGGTTGACACAGGGGGCTATGGGCGTCATTGAGTTCTTGCTG
TCTTGTGGGGTGTCGGGCATGTTGTATGCAATTTTTTCGGGGCAGCCAAT
GACCTTCATCGGCCCCACGGGACTGACATTGTGTTTTATGGCTGCGCTCT
TCAATTTTTGCAATTCTTTTGGGTTGGCGTTCATGCCCATGTACACCTGG
GTAGGGATCTGGACGAGCCTGATGCTTGTGACGCTGTCATCCGCGAATGC
CTGTTTGTTGACCAAGCACTGTACGCGCTTTACGGACGAGGTGTTCAACG
CGCTCTTGGCGCTGAATTTTACCTACGAAGCTCTCAAAAATATCGTCGTC
CGCTTCTTCTCCACCGGTACCGACAAAACCCAACCCTTCCTCGCCCTCAA
CATGGCCTTGGCAACATTTGCCCTGTCCCAACGCCTGGTCTCGTACCGTT
CTTCGATCCTCTTCACGCGTCGCATCCGAGGCTTCTTGTCGGATTTCGGC
CCCGCCCTCACCATCATCATCATGACGTTGCTCGGCTCCCTACCCATGGT
CCGTGGCCTGGGCATCGAGTATTTGAAAGCCCCGAAACGGTTCCAGTTCG
GTAACGGGCGGCGTTTATTCGTCCCTTTGTGGGATTTACCGGTCTGGGCG
CGTGGATTGGCGTTGGTACCGGCGGCGGCCTTGACAGTGTTGTTCTTTTT
AGATCACAATATTAGTGTGCGGGTGGTAAATTCACCCGACAACAAGATGA
AGAAAAGCCCGGCGTATCACCTGGATTTGTTTGTGCTAGGGAGCATTGTC
TTTTTGTGCTCGATTGTGGGGTTGCCGTGGATGTGTGCGGCGACGATTCA
GAGCCTGAATCATGTGAGGAGTGTCACTGAGTATGAACCTGTCGGAGTAG
GAGAAGGAGGAAAGGGGGGGGGAACAGCAGCAGTAGTTGTAAGCGGAAGC
GGAGGAGGTAAAGGAGATGTAAAACAGGAAGAGGAAGAGACGGCGACTGT
GATGGAGACGCGGTTGACGGGCTTGGGGATCCACGCCCTGGTGTTGTCGA
GCATTGGCCTTTTGCCTCTATTGAGACGTATCCCGATTCCCGTGATCAGT
GGCATCTTTCTTTATCTTGGCCGGACGGTCATGACGGGCAATACGTTCTT
ACAACGGGTCAAGGGCGCGTTTTTTGACAAGAGTATGCTACCCGAAGACT
CGCCCTTCAAACGGTTGGGGAGAACGACTGTGAACAAGTTTACGGCGATT
CAGGTGGGCTGCTTGGCGGTGTTGTGGACCTTGAAGAGTAATCCGGCAAC
CGGGATGTTTTTCCCGAGCGTGATTGGGATGTTGATTCTGACGAGGATCT
TGGTGATCCCGCGGTTGTTTTCCAAGGAGGAGATTTCGGTGTTGGATGTG
GATTAG
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protein sequence of NO01G02900.1

>NO01G02900.1-protein ID=NO01G02900.1-protein|Name=NO01G02900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=652bp
MLSKRQLTGGVALALFSAYPAHSFCYSRFSLPVVDRTTLSSASPSSSISS
SSPFSGRSLPSSRGGNARTYGEPLRVSMPFHIRFSTGVAMPPDDSPSSYS
SSSRSSSTASLYSAPTSSSSPSSFPALPSRGWRIEWFKGLREDIANRRPL
YKSDWTDGMKVKTIPTILFLYFACLAPAVAFGGISYGLTQGAMGVIEFLL
SCGVSGMLYAIFSGQPMTFIGPTGLTLCFMAALFNFCNSFGLAFMPMYTW
VGIWTSLMLVTLSSANACLLTKHCTRFTDEVFNALLALNFTYEALKNIVV
RFFSTGTDKTQPFLALNMALATFALSQRLVSYRSSILFTRRIRGFLSDFG
PALTIIIMTLLGSLPMVRGLGIEYLKAPKRFQFGNGRRLFVPLWDLPVWA
RGLALVPAAALTVLFFLDHNISVRVVNSPDNKMKKSPAYHLDLFVLGSIV
FLCSIVGLPWMCAATIQSLNHVRSVTEYEPVGVGEGGKGGGTAAVVVSGS
GGGKGDVKQEEEETATVMETRLTGLGIHALVLSSIGLLPLLRRIPIPVIS
GIFLYLGRTVMTGNTFLQRVKGAFFDKSMLPEDSPFKRLGRTTVNKFTAI
QVGCLAVLWTLKSNPATGMFFPSVIGMLILTRILVIPRLFSKEEISVLDV
D*
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mRNA from alignment at chr1:756295..758369-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02900.1 ID=NO01G02900.1|Name=NO01G02900.1|organism=Nannochloropsis oceanica|type=mRNA|length=2075bp|location=Sequence derived from alignment at chr1:756295..758369- (Nannochloropsis oceanica)
ATGCTATCCAAACGCCAGCTTACGGGAGGCGTAGCGCTAGCACTATTCAG CGCGTATCCGGCACACTCCTTCTGTTACTCCCGTTTCAGTTTGCCAGTTG TGGATAGAACGACTCTCTCCTCCGCCTCCCCCTCCTCCTCCATTTCCTCC TCCTCCCCTTTCTCTGGCAGATCGCTACCAAGCAGTCGCGGCGGCAACGC ACGCACGTATGGAGGTAAGGGAATCTACTGAATGGGCTATTAGGGTTGCA CGGCAGGTGTAAGGAAAGGAGCTGCTTCAACCCTCGCGTCCGTCTTCCTC ACACCCACTGAATCGCCTCTCCCTCTCTCACAGAGCCTCTACGTGTCTCG ATGCCCTTTCACATAAGGTTTAGTACCGGTGTAGCCATGCCACCGGACGA CTCTCCCTCCTCCTATTCCTCCTCATCCCGGTCATCATCCACCGCTTCCC TCTACTCAGCCCCCACCTCCTCCTCTTCCCCCTCCTCTTTCCCCGCCTTG CCCAGCCGAGGATGGAGAATAGAATGGTTTAAGGGCCTCAGGGAGGACAT TGCCAATCGTAGGCCGCTCTATAAATCGGATTGGACCGATGGAATGAAAG TAAAGACGATTCCGACCATCCTCTTTTTATACTTTGCCTGTTTGGCTCCT GCGGTTGCATTTGGAGGGATCAGCTATGGGTTGACACAGGGGGCTATGGG CGTCATTGAGTTCTTGCTGTCTTGTGGGGTGTCGGGCATGTTGTATGCAA TTTTTTCGGGGCAGCCAATGACCTTCATCGGCCCCACGGGACTGACATTG TGTTTTATGGCTGCGCTCTTCAATTTTTGCAATTCTTTTGGGTTGGCGTT CATGCCCATGTACACCTGGGTAGGGATCTGGACGAGCCTGATGCTTGTGA CGCTGTCATCCGCGAATGCCTGTTTGTTGACCAAGCACTGTACGCGCTTT ACGGACGAGGTGTTCAACGCGCTCTTGGCGCTGAATTTTACCTACGAAGC TCTCAAAAATATCGTCGTCCGCTTCTTCTCCACCGGTACCGACAAAACCC AACCCTTCCTCGCCCTCAACATGGCCTTGGCAACATTTGCCCTGTCCCAA CGCCTGGTCTCGTACCGTTCTTCGATCCTCTTCACGCGTCGCATCCGAGG CTTCTTGTCGGATTTCGGCCCCGCCCTCACCATCATCATCATGACGTTGC TCGGCTCCCTACCCATGGTCCGTGGCCTGGGCATCGAGTATTTGAAAGCC CCGAAACGGTTCCAGTTCGGTAACGGGCGGCGTTTATTCGTCCCTTTGTG GGATTTACCGGTCTGGGCGCGTGGATTGGCGTTGGTACCGGCGGCGGCCT TGACAGTGTTGTTCTTTTTAGATCACAATATTAGTGTGCGGGTGGTAAAT TCACCCGACAACAAGATGAAGAAAAGCCCGGCGTATCACCTGGATTTGTT TGTGCTAGGGAGCATTGTCTTTTTGTGCTCGATTGTGGGGTTGCCGTGGA TGTGTGCGGCGACGATTCAGAGCCTGAATCATGTGAGGAGTGTCACTGAG TATGAACCTGTCGGAGTAGGAGAAGGAGGAAAGGGGGGGGGAACAGCAGC AGTAGTTGTAAGCGGAAGCGGAGGAGGTAAAGGAGATGTAAAACAGGAAG AGGAAGAGACGGCGACTGTGATGGAGACGCGGTTGACGGGCTTGGGGATC CACGCCCTGGTGTTGTCGAGCATTGGCCTTTTGCCTCTATTGAGACGTAT CCCGATTCCCGTGATCAGTGGCATCTTTCTTTATCTTGGCCGGACGGTCA TGACGGGCAATACGTTCTTACAACGGGTCAAGGGCGCGTTTTTTGACAAG AGTATGCTACCCGAAGACTCGCCCTTCAAACGGTTGGGGAGAACGACTGT GAACAAGTTTACGGCGATTCAGGTGGGCTGCTTGGCGGTGTTGTGGACCT TGAAGAGTAATCCGGCAACCGGGATGTTTTTCCCGAGCGTGATTGGGATG TTGATTCTGACGAGGATCTTGGTGATCCCGCGGTTGTTTTCCAAGGAGGA GATTTCGGTGTTGGATGTGGATTAG
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Coding sequence (CDS) from alignment at chr1:756295..758369-

>NO01G02900.1 ID=NO01G02900.1|Name=NO01G02900.1|organism=Nannochloropsis oceanica|type=CDS|length=1956bp|location=Sequence derived from alignment at chr1:756295..758369- (Nannochloropsis oceanica)
ATGCTATCCAAACGCCAGCTTACGGGAGGCGTAGCGCTAGCACTATTCAG
CGCGTATCCGGCACACTCCTTCTGTTACTCCCGTTTCAGTTTGCCAGTTG
TGGATAGAACGACTCTCTCCTCCGCCTCCCCCTCCTCCTCCATTTCCTCC
TCCTCCCCTTTCTCTGGCAGATCGCTACCAAGCAGTCGCGGCGGCAACGC
ACGCACGTATGGAGAGCCTCTACGTGTCTCGATGCCCTTTCACATAAGGT
TTAGTACCGGTGTAGCCATGCCACCGGACGACTCTCCCTCCTCCTATTCC
TCCTCATCCCGGTCATCATCCACCGCTTCCCTCTACTCAGCCCCCACCTC
CTCCTCTTCCCCCTCCTCTTTCCCCGCCTTGCCCAGCCGAGGATGGAGAA
TAGAATGGTTTAAGGGCCTCAGGGAGGACATTGCCAATCGTAGGCCGCTC
TATAAATCGGATTGGACCGATGGAATGAAAGTAAAGACGATTCCGACCAT
CCTCTTTTTATACTTTGCCTGTTTGGCTCCTGCGGTTGCATTTGGAGGGA
TCAGCTATGGGTTGACACAGGGGGCTATGGGCGTCATTGAGTTCTTGCTG
TCTTGTGGGGTGTCGGGCATGTTGTATGCAATTTTTTCGGGGCAGCCAAT
GACCTTCATCGGCCCCACGGGACTGACATTGTGTTTTATGGCTGCGCTCT
TCAATTTTTGCAATTCTTTTGGGTTGGCGTTCATGCCCATGTACACCTGG
GTAGGGATCTGGACGAGCCTGATGCTTGTGACGCTGTCATCCGCGAATGC
CTGTTTGTTGACCAAGCACTGTACGCGCTTTACGGACGAGGTGTTCAACG
CGCTCTTGGCGCTGAATTTTACCTACGAAGCTCTCAAAAATATCGTCGTC
CGCTTCTTCTCCACCGGTACCGACAAAACCCAACCCTTCCTCGCCCTCAA
CATGGCCTTGGCAACATTTGCCCTGTCCCAACGCCTGGTCTCGTACCGTT
CTTCGATCCTCTTCACGCGTCGCATCCGAGGCTTCTTGTCGGATTTCGGC
CCCGCCCTCACCATCATCATCATGACGTTGCTCGGCTCCCTACCCATGGT
CCGTGGCCTGGGCATCGAGTATTTGAAAGCCCCGAAACGGTTCCAGTTCG
GTAACGGGCGGCGTTTATTCGTCCCTTTGTGGGATTTACCGGTCTGGGCG
CGTGGATTGGCGTTGGTACCGGCGGCGGCCTTGACAGTGTTGTTCTTTTT
AGATCACAATATTAGTGTGCGGGTGGTAAATTCACCCGACAACAAGATGA
AGAAAAGCCCGGCGTATCACCTGGATTTGTTTGTGCTAGGGAGCATTGTC
TTTTTGTGCTCGATTGTGGGGTTGCCGTGGATGTGTGCGGCGACGATTCA
GAGCCTGAATCATGTGAGGAGTGTCACTGAGTATGAACCTGTCGGAGTAG
GAGAAGGAGGAAAGGGGGGGGGAACAGCAGCAGTAGTTGTAAGCGGAAGC
GGAGGAGGTAAAGGAGATGTAAAACAGGAAGAGGAAGAGACGGCGACTGT
GATGGAGACGCGGTTGACGGGCTTGGGGATCCACGCCCTGGTGTTGTCGA
GCATTGGCCTTTTGCCTCTATTGAGACGTATCCCGATTCCCGTGATCAGT
GGCATCTTTCTTTATCTTGGCCGGACGGTCATGACGGGCAATACGTTCTT
ACAACGGGTCAAGGGCGCGTTTTTTGACAAGAGTATGCTACCCGAAGACT
CGCCCTTCAAACGGTTGGGGAGAACGACTGTGAACAAGTTTACGGCGATT
CAGGTGGGCTGCTTGGCGGTGTTGTGGACCTTGAAGAGTAATCCGGCAAC
CGGGATGTTTTTCCCGAGCGTGATTGGGATGTTGATTCTGACGAGGATCT
TGGTGATCCCGCGGTTGTTTTCCAAGGAGGAGATTTCGGTGTTGGATGTG
GATTAG
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Synonyms
Publications