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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:736907..739477 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G02850.1 vs.
Match: EWM29132.1 (dna replication licensing factor mcm9 [Nannochloropsis gaditana]) HSP 1 Score: 889.0 bits (2296), Expect = 9.700e-255 Identity = 467/657 (71.08%), Postives = 519/657 (79.00%), Query Frame = 0
Query: 4 NAAAIRLIRAGHTLLSPDEHRDIFVAFIQRGPSPRYIKTLQELLEEDDEMGHHPFVVNAQDVIAFNPQVGYLLMYNPMVLLPIFEEAVLRVQMTLLKLLDYQDSLNQQQQQQQGIASMPSSYRSVKGHAHVRISHIPPIPELYKASLSGIRAHDVGRLIQVTGTVVRLGTVKMLNASREYTCKNSKCGHRFRVYADFEQGYMLQPPRACPRECRSSEFVENPDGDECTDYQELKVQEQVQNLKFGSIPRSILVALEDDLVDTCRPGDDIVVSGCLVRRWRPVCKDRRCEVEVVLRANSVRLARKPNLLQGNSVLHEECRQEFMRFWAEHYERKESLFARNIIVRSVCPQIYGMLVVKLAILLTIIGGVEQESSSAAPTAA-----------------ATAH-----------GKSQFLRFASRLVPRSVLTTGIGTTNAGLTCSAVRDGNEWVLEAGALVLADRGLCCIDEFSSIREHDRTAIHEAMEQQTLSIAKAGLVCKLNARASVIAVTNPKVTLDVDQMVGAGDIG--DLTTKTAINAPLLSRFDLILLLTDKCGEEWDEAVSTFVLEGSIPQDQREHQQSKTQINSPATPAGTASSGGSASSGLERLAAANSVPFWGLEKLQKYVAFVKDAYQPKWTPDAMAVLERYYQMQ 631
NAAA+RLIRAGHTLLSPDEHR+IF FIQ G +P Y+ L+ELL DDEMGHH FVVNAQD+IAFNP VGYLLMYNPMVLLPIFEEAVLRVQMTLLK L+ +D ++Q Q + S +RSVKGH HVRI HIPPIPELYK+SLS IRAHDVGRLIQV GTVVRLG VKMLNASRE+TC+N KC HRFRVYADFEQGY++Q P+ACPRECRSSEF E P+ DECTDYQE+K+QEQ+QNL+FGSIPRSILVALEDDLVDTCRPGDD+V+SGCL+RRWRPVCKDRRCEVEVVLRANSVRL KP L QG V+ EE RQ FMRFWA +Y+ +E L ARNIIVRSVCPQIYGMLVVKLAILLTIIGGVE ++ + +A+ +H GKSQFLRFASRLVPRSVLTTGIGTTNAGLTCSAVRDG EWVLEAGALVLADRGLCCIDEFSSIREHDRTAIHEAMEQQTLSIAKAGLVCKLNARASVIAVTNPKV L D G ++G DLT TAINAPLLSRFDL+LLLTDKCGEEWDEAVSTFVL GSI Q + ++T S +G E + +VPFW L++LQ YVAFVK + P+ + +AM VLE YYQ+Q
Sbjct: 25 NAAAVRLIRAGHTLLSPDEHREIFANFIQSGRNPGYVDALKELLHRDDEMGHHSFVVNAQDIIAFNPMVGYLLMYNPMVLLPIFEEAVLRVQMTLLKTLEAKDRVDQPDNATQQLRS----HRSVKGHVHVRIFHIPPIPELYKSSLSDIRAHDVGRLIQVIGTVVRLGAVKMLNASREFTCRNGKCRHRFRVYADFEQGYVMQAPQACPRECRSSEFEEAPEADECTDYQEIKIQEQIQNLRFGSIPRSILVALEDDLVDTCRPGDDVVISGCLMRRWRPVCKDRRCEVEVVLRANSVRLISKPTLFQGGLVMREESRQGFMRFWAHYYDIREPLVARNIIVRSVCPQIYGMLVVKLAILLTIIGGVEMDAKHCSTSASDGNTSDRDKAAGEDKFRVRSHPHLLLVGDPGTGKSQFLRFASRLVPRSVLTTGIGTTNAGLTCSAVRDGKEWVLEAGALVLADRGLCCIDEFSSIREHDRTAIHEAMEQQTLSIAKAGLVCKLNARASVIAVTNPKVNLGSDD--GGTEVGMTDLTVTTAINAPLLSRFDLVLLLTDKCGEEWDEAVSTFVLNGSISQKCEHERDNRTASAKENLSTSANPQSSSHGTGFE----SPTVPFWTLQQLQNYVAFVKSTFNPELSQEAMTVLECYYQVQ 671
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G02850.1 ID=NO01G02850.1|Name=NO01G02850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2199bp ATGCCTAACAATGCAGCCGCCATCCGCCTCATCCGTGCCGGTCATACCTT ATTGAGCCCCGACGAGCACCGCGACATCTTTGTGGCTTTCATCCAGCGAG GACCCAGCCCGCGGTACATCAAAACACTGCAGGAACTGCTAGAGGAGGAT GATGAGATGGGTCACCATCCCTTTGTGGTGAATGCTCAGGACGTGATTGC CTTCAATCCCCAGGTGGGCTATCTACTCATGTACAATCCAATGGTACTCC TTCCCATTTTTGAGGAAGCCGTGTTACGCGTGCAAATGACCTTGCTGAAG CTGCTCGACTACCAAGACAGTCTAAACCAGCAGCAGCAACAACAGCAGGG AATCGCGTCAATGCCCTCTTCGTACAGAAGCGTCAAGGGACACGCTCATG TCCGCATCTCGCACATCCCCCCTATTCCGGAGCTGTATAAGGCGAGCTTA AGTGGTATCCGTGCGCATGACGTCGGGCGGCTCATTCAGGTGACGGGTAC AGTTGTCCGTCTTGGTACCGTCAAAATGCTAAATGCCTCGCGGGAATACA CTTGCAAAAACAGCAAGTGCGGGCACCGCTTTCGAGTTTATGCCGACTTT GAGCAGGGCTACATGCTGCAGCCCCCTCGGGCTTGTCCACGTGAGTGCCG CTCGAGTGAATTTGTGGAAAACCCCGACGGGGATGAATGCACGGATTACC AAGAACTCAAAGTGCAAGAGCAAGTCCAAAACCTCAAGTTTGGTTCCATC CCCCGCTCGATTCTTGTGGCCTTGGAGGATGACCTCGTTGATACCTGCCG GCCAGGGGACGATATCGTGGTATCTGGGTGCTTGGTGCGACGCTGGCGGC CAGTCTGTAAGGACAGGCGGTGCGAGGTAGAAGTCGTCCTTAGGGCGAAC AGCGTGCGGTTGGCCAGAAAGCCTAATTTGCTACAGGGTAATTCGGTTCT CCATGAGGAGTGCCGGCAGGAGTTCATGCGGTTTTGGGCGGAGCATTATG AAAGGAAGGAGTCGTTGTTCGCGCGAAATATCATCGTCCGTTCCGTGTGT CCCCAGATCTATGGCATGCTGGTCGTGAAGCTCGCGATACTTCTAACCAT CATAGGAGGAGTGGAGCAAGAATCGTCGTCTGCTGCACCTACTGCCGCTG CCACTGCTCATGGCAAGAGTCAGTTTTTGCGGTTTGCAAGTCGGTTGGTG CCACGGTCGGTATTGACGACGGGAATTGGGACGACGAATGCGGGGTTGAC TTGTAGTGCGGTGCGAGATGGGAATGAGTGGGTGCTGGAGGCGGGCGCGT TGGTGCTTGCGGATAGGGGGCTGTGTTGCATCGACGAGTTTTCGAGTATA CGGGAGCATGACCGTACGGCGATTCATGAGGCGATGGAACAACAGACGTT GAGCATAGCCAAGGCGGGTCTGGTGTGTAAACTTAATGCGAGGGCGTCGG TGATTGCCGTGACCAATCCGAAGGTTACGTTGGATGTGGATCAGATGGTC GGAGCTGGGGATATTGGGGACTTAACCACTAAGACGGCGATAAATGCACC CTTGCTCTCCCGGTTTGACTTGATCCTGCTCTTGACGGATAAGTGTGGGG AGGAGTGGGACGAGGCCGTCTCGACGTTTGTGCTGGAAGGGTCCATTCCG CAAGACCAGCGTGAGCACCAACAGTCGAAGACCCAAATAAACTCACCAGC AACGCCGGCAGGGACGGCTTCAAGTGGTGGGTCGGCCTCGTCGGGGTTGG AGAGGCTTGCTGCTGCTAACAGTGTGCCGTTTTGGGGGCTTGAAAAACTG CAGAAATACGTGGCGTTTGTGAAGGATGCGTATCAACCCAAGTGGACACC GGATGCCATGGCGGTGTTGGAGCGGTACTACCAGATGCAACGAAGCTCGG ACCACCGCAGCGTCGCCCTCACCACCGTCCGCCTCCTCGAGAGCCTCATT CGTTTGTCAGAGGCCCATGCCCGCTTGATGTGTCGAAATCGTGTCACCCT GCAGGATGCCGTGGTGGCTGTGTTTTGCGTAGAATGCTGTCGTCAGTCCA TTCCCAGCCTGGGGCCTTATCGAGACTACCATTACGACTCTAAGGATCCT GATCAAGACTATGCGGACATGCAAGCTGTCATCCTCCGCTCCTTGGGGCT GCAGATGCCTGCTGCTGGTATTGGCGCTGCTCCAGTACCACCTGAATGA back to topprotein sequence of NO01G02850.1 >NO01G02850.1-protein ID=NO01G02850.1-protein|Name=NO01G02850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=733bp MPNNAAAIRLIRAGHTLLSPDEHRDIFVAFIQRGPSPRYIKTLQELLEED DEMGHHPFVVNAQDVIAFNPQVGYLLMYNPMVLLPIFEEAVLRVQMTLLK LLDYQDSLNQQQQQQQGIASMPSSYRSVKGHAHVRISHIPPIPELYKASL SGIRAHDVGRLIQVTGTVVRLGTVKMLNASREYTCKNSKCGHRFRVYADF EQGYMLQPPRACPRECRSSEFVENPDGDECTDYQELKVQEQVQNLKFGSI PRSILVALEDDLVDTCRPGDDIVVSGCLVRRWRPVCKDRRCEVEVVLRAN SVRLARKPNLLQGNSVLHEECRQEFMRFWAEHYERKESLFARNIIVRSVC PQIYGMLVVKLAILLTIIGGVEQESSSAAPTAAATAHGKSQFLRFASRLV PRSVLTTGIGTTNAGLTCSAVRDGNEWVLEAGALVLADRGLCCIDEFSSI REHDRTAIHEAMEQQTLSIAKAGLVCKLNARASVIAVTNPKVTLDVDQMV GAGDIGDLTTKTAINAPLLSRFDLILLLTDKCGEEWDEAVSTFVLEGSIP QDQREHQQSKTQINSPATPAGTASSGGSASSGLERLAAANSVPFWGLEKL QKYVAFVKDAYQPKWTPDAMAVLERYYQMQRSSDHRSVALTTVRLLESLI RLSEAHARLMCRNRVTLQDAVVAVFCVECCRQSIPSLGPYRDYHYDSKDP DQDYADMQAVILRSLGLQMPAAGIGAAPVPPE* back to topmRNA from alignment at chr1:736907..739477+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G02850.1 ID=NO01G02850.1|Name=NO01G02850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2571bp|location=Sequence derived from alignment at chr1:736907..739477+ (Nannochloropsis oceanica) ATGCCTAACAATGCAGCCGCCATCCGCCTCATCCGTGCCGGTCATACCTT
ATTGAGCCCCGACGAGCACCGCGACATCTTTGTGGCTTTCATCCAGCGAG
GACCCAGCCCGCGGTACATCAAAACACTGCAGGAACTGCTAGAGGAGGAT
GATGAGATGGGTCACCATCCCTTTGTGGTGAATGCTCAGGACGTGATTGC
CTTCAATCCCCAGGTGGGCTATCTACTCATGTACAATCCAATGGTACTCC
TTCCCATTTTTGAGGAAGCCGTGTTACGCGTGCAAATGACCTTGCTGAAG
CTGCTCGACTACCAAGACAGTCTAAACCAGCAGCAGCAACAACAGCAGGG
AATCGCGTCAATGCCCTCTTCGTACAGAAGCGTCAAGGGACACGCTCATG
TCCGCATCTCGCACATCCCCCCTATTCCGGAGCTGTATAAGGCGAGCTTA
AGTGGTATCCGTGCGCATGACGTCGGGCGGCTCATTCAGGTGACGGGTAC
AGTTGTCCGTCTTGGTACCGTCAAAATGCTAAATGCCTCGCGGGAATACA
CTTGCAAAAACAGCAAGTGCGGGCACCGCTTTCGAGTTTATGCCGACTTT
GAGCAGGGCTACATGCTGCAGCCCCCTCGGGCTTGTCCACGTGAGTGCCG
CTCGAGTGAATTTGTGGAAAACCCCGACGGGGATGAATGCACGGATTACC
AAGAACTCAAAGTGCAAGAGCAAGTCCAAAACCTCAAGTTTGGTTCCATC
CCCCGCTCGATTCTTGTGGCCTTGGAGGATGACCTCGTTGATACCTGCCG
GCCAGGGGACGATATCGTGGTATCTGGGTGCTTGGTGCGACGCTGGCGGC
CAGTCTGTAAGGACAGGCGGTGCGAGGTAGAAGTCGTCCTTAGGGCGAAC
AGCGTGCGGTTGGCCAGAAAGCCTAATTTGCTACAGGGTAATTCGGTTCT
CCATGAGGAGTGCCGGCAGGAGTTCATGCGGTTTTGGGCGGAGCATTATG
AAAGGAAGGAGTCGTTGTTCGCGCGAAATATCATCGTCCGTTCCGTGTGT
CCCCAGATCTATGGCATGCTGGTCGTGAAGCTCGCGATACTTCTAACCAT
CATAGGAGGAGTGGAGCAAGAATCGTCGTCTGCTGCACCTACTGCCGCTG
CCACTGCTCATGGTGGAGGGGGGGGAACCATGATAAGTTTAGTGTTCGAA
GCCACCCACATCTGCTGTTGGTGGGGGACCCGGGGACAGGCAAGAGTCAG
TTTTTGCGGTTTGCAAGTCGGTTGGTGCCACGGTCGGTATTGACGACGGG
AATTGGGACGACGAATGCGGGGTTGACTTGTAGTGCGGTGCGAGATGGGA
ATGAGTGGGTGCTGGAGGCGGGCGCGTTGGTGCTTGCGGATAGGGGGCTG
TGTTGCATCGACGAGTTTTCGAGTATACGGGAGCATGACCGTACGGCGAT
TCATGAGGCGATGGAACAACAGACGTTGAGCATAGCCAAGGCGGGTCTGG
TGTGTAAACTTAATGCGAGGGCGTCGGTGATTGCCGTGACCAATCCGAAG
GTTACGTTGGATGTGGATCAGATGGTCGGAGCTGGGGATATTGGGGACTT
AACCACTAAGACGGCGATAAATGCACCCTTGCTCTCCCGGTTTGACTTGA
TCCTGCTCTTGACGGATAAGTGTGGGGAGGAGTGGGACGAGGCCGTCTCG
ACGTTTGTGCTGGAAGGGTCCATTCCGCAAGACCAGCGTGAGCACCAACA
GTCGAAGACCCAAATAAACTCACCAGCAACGCCGGCAGGGACGGCTTCAA
GTGGTGGGTCGGCCTCGTCGGGGTTGGAGAGGCTTGCTGCTGCTAACAGT
GTGCCGTTTTGGGGGCTTGAAAAACTGCAGAAATACGTGGCGTTTGTGAA
GGATGCGTATCAACCCAAGTGGACACCGGATGCCATGGCGGTGTTGGAGC
GGTACTACCAGGTACGCAGGAGGAAGGAATTGGGGTGGGGAACGGAGAGC
AGATATAGTGTGAAATGGAAATCTTAAAAAGAGAATAAATCGTAGATGTA
AGGAAGAAGATTTATGATGAGTGTATATATGTTCCTCGCTTCCCCTCGAC
ATTTTCATCAGATGCAACGAAGCTCGGACCACCGCAGCGTCGCCCTCACC
ACCGTCCGCCTCCTCGAGAGCCTCATTCGTTTGTCAGAGGCCCATGCCCG
CTTGATGTGTCGAAATCGTGTCACCCTGCAGGATGCCGTGGTGGCTGTGT
TTTGCGTAGAATGCTGTCGTCAGTCCATTCCCAGCCTGGGGCCTTATCGA
GGTGAGGCAGGAGGGAAGGAGAAAGGAGAGAGAGAGAGAATTAAGTGACA
CACCAAGCTTCTATGCCGACACGTCTGAAGAGGCAAATATGTTTTACACA
ATCACCACAAACACTTTCCACCTTTTCACTTTTCCTCTTCTGGCAGACTA
CCATTACGACTCTAAGGATCCTGATCAAGACTATGCGGACATGCAAGCTG
TCATCCTCCGCTCCTTGGGGCTGCAGATGCCTGCTGCTGGTATTGGCGCT
GCTCCAGTACCACCTGAATGA back to topCoding sequence (CDS) from alignment at chr1:736907..739477+ >NO01G02850.1 ID=NO01G02850.1|Name=NO01G02850.1|organism=Nannochloropsis oceanica|type=CDS|length=2199bp|location=Sequence derived from alignment at chr1:736907..739477+ (Nannochloropsis oceanica) ATGCCTAACAATGCAGCCGCCATCCGCCTCATCCGTGCCGGTCATACCTT ATTGAGCCCCGACGAGCACCGCGACATCTTTGTGGCTTTCATCCAGCGAG GACCCAGCCCGCGGTACATCAAAACACTGCAGGAACTGCTAGAGGAGGAT GATGAGATGGGTCACCATCCCTTTGTGGTGAATGCTCAGGACGTGATTGC CTTCAATCCCCAGGTGGGCTATCTACTCATGTACAATCCAATGGTACTCC TTCCCATTTTTGAGGAAGCCGTGTTACGCGTGCAAATGACCTTGCTGAAG CTGCTCGACTACCAAGACAGTCTAAACCAGCAGCAGCAACAACAGCAGGG AATCGCGTCAATGCCCTCTTCGTACAGAAGCGTCAAGGGACACGCTCATG TCCGCATCTCGCACATCCCCCCTATTCCGGAGCTGTATAAGGCGAGCTTA AGTGGTATCCGTGCGCATGACGTCGGGCGGCTCATTCAGGTGACGGGTAC AGTTGTCCGTCTTGGTACCGTCAAAATGCTAAATGCCTCGCGGGAATACA CTTGCAAAAACAGCAAGTGCGGGCACCGCTTTCGAGTTTATGCCGACTTT GAGCAGGGCTACATGCTGCAGCCCCCTCGGGCTTGTCCACGTGAGTGCCG CTCGAGTGAATTTGTGGAAAACCCCGACGGGGATGAATGCACGGATTACC AAGAACTCAAAGTGCAAGAGCAAGTCCAAAACCTCAAGTTTGGTTCCATC CCCCGCTCGATTCTTGTGGCCTTGGAGGATGACCTCGTTGATACCTGCCG GCCAGGGGACGATATCGTGGTATCTGGGTGCTTGGTGCGACGCTGGCGGC CAGTCTGTAAGGACAGGCGGTGCGAGGTAGAAGTCGTCCTTAGGGCGAAC AGCGTGCGGTTGGCCAGAAAGCCTAATTTGCTACAGGGTAATTCGGTTCT CCATGAGGAGTGCCGGCAGGAGTTCATGCGGTTTTGGGCGGAGCATTATG AAAGGAAGGAGTCGTTGTTCGCGCGAAATATCATCGTCCGTTCCGTGTGT CCCCAGATCTATGGCATGCTGGTCGTGAAGCTCGCGATACTTCTAACCAT CATAGGAGGAGTGGAGCAAGAATCGTCGTCTGCTGCACCTACTGCCGCTG CCACTGCTCATGGCAAGAGTCAGTTTTTGCGGTTTGCAAGTCGGTTGGTG CCACGGTCGGTATTGACGACGGGAATTGGGACGACGAATGCGGGGTTGAC TTGTAGTGCGGTGCGAGATGGGAATGAGTGGGTGCTGGAGGCGGGCGCGT TGGTGCTTGCGGATAGGGGGCTGTGTTGCATCGACGAGTTTTCGAGTATA CGGGAGCATGACCGTACGGCGATTCATGAGGCGATGGAACAACAGACGTT GAGCATAGCCAAGGCGGGTCTGGTGTGTAAACTTAATGCGAGGGCGTCGG TGATTGCCGTGACCAATCCGAAGGTTACGTTGGATGTGGATCAGATGGTC GGAGCTGGGGATATTGGGGACTTAACCACTAAGACGGCGATAAATGCACC CTTGCTCTCCCGGTTTGACTTGATCCTGCTCTTGACGGATAAGTGTGGGG AGGAGTGGGACGAGGCCGTCTCGACGTTTGTGCTGGAAGGGTCCATTCCG CAAGACCAGCGTGAGCACCAACAGTCGAAGACCCAAATAAACTCACCAGC AACGCCGGCAGGGACGGCTTCAAGTGGTGGGTCGGCCTCGTCGGGGTTGG AGAGGCTTGCTGCTGCTAACAGTGTGCCGTTTTGGGGGCTTGAAAAACTG CAGAAATACGTGGCGTTTGTGAAGGATGCGTATCAACCCAAGTGGACACC GGATGCCATGGCGGTGTTGGAGCGGTACTACCAGATGCAACGAAGCTCGG ACCACCGCAGCGTCGCCCTCACCACCGTCCGCCTCCTCGAGAGCCTCATT CGTTTGTCAGAGGCCCATGCCCGCTTGATGTGTCGAAATCGTGTCACCCT GCAGGATGCCGTGGTGGCTGTGTTTTGCGTAGAATGCTGTCGTCAGTCCA TTCCCAGCCTGGGGCCTTATCGAGACTACCATTACGACTCTAAGGATCCT GATCAAGACTATGCGGACATGCAAGCTGTCATCCTCCGCTCCTTGGGGCT GCAGATGCCTGCTGCTGGTATTGGCGCTGCTCCAGTACCACCTGAATGA back to top
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