NO01G02840.1, NO01G02840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02840.1
Unique NameNO01G02840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1053
Alignment locationchr1:735491..736543 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:735491..736543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02840.1 vs.
Match: EWM29211.1 (hypothetical protein Naga_100007g118 [Nannochloropsis gaditana])

HSP 1 Score: 357.8 bits (917), Expect = 3.700e-95
Identity = 209/357 (58.54%), Postives = 258/357 (72.27%), Query Frame = 0 
Query:    1 MKLFAAVFVLVAAISTIL-TVNAFVPH---PPPSPFIAGSSTSTM----GR--TRRSAATLVAPTSSIKSSVQDTLKQAFPSVQIPAEFLSAVSSPGMGTDLERALIRGKAFAAMAPRVLITRGWDVLSDDFVYYSSATGKLDRAGFLGLVCIMERALPDLQQSASKFEVTSDGAVMYVSEAVGTFTGQLIISETMQEGNGLKYQGLREACVVAFNDDGQLQSLSAGLVVEEESDGKDESVAEAAQVELMKRLASHVQKLEMTPTGKSAREKIQQDIDSTQAKIDAYEKAGETVKVGTGAGLGGLLQALGVDVPKAEILSDVLVSHASEPLLVMEASDLITVPTECDALMDNINPMT 348
            MK  AA   LVAA+  I   V AF+P    P  S  I G++++      GR     S + +V+ +SSI    +  L+++FP+V++   FLSA+      TD  RALIR KAFA MAPR++++RGW+VLS+DFVYYSSATG LDRA +LGLV IMERALPDL+Q +S+FEV +DG V+YVS+AVGTFTGQL I   + EG+GLKYQGL+E CVVAFN+DGQLQSLSAGLVVEE SD  +E VA  A   L+KRL SH QKLEMTPTGKSAREKIQQDID+TQAKI+A+EK  ETVKV   AGLGGLL ALGV VP+A  LS  L     + L VM+  DL++VPTEC+ L+++  PMT
Sbjct:    1 MKGLAASSSLVAAVFMISKVVQAFIPRLDFPQTSVLITGTTSTRTKESGGRDAVAHSPSDVVSSSSSIPLCAEVVLRRSFPNVEVAPGFLSAIRPNSKSTDTGRALIRAKAFANMAPRIIVSRGWNVLSEDFVYYSSATGPLDRAEYLGLVAIMERALPDLRQDSSRFEVGADGTVLYVSQAVGTFTGQLQIGHDIHEGSGLKYQGLKEVCVVAFNEDGQLQSLSAGLVVEEGSDEDEELVAAEALSGLLKRLESHKQKLEMTPTGKSAREKIQQDIDNTQAKIEAFEKDSETVKVAHEAGLGGLLGALGVCVPEAGDLSSALAGQGLDELFVMDDLDLMSVPTECETLLEDKGPMT 357
The following BLAST results are available for this feature:
BLAST of NO01G02840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29211.13.700e-9558.54hypothetical protein Naga_100007g118 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02840NO01G02840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02840.1NO01G02840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02840.1.cds1NO01G02840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02840.1 ID=NO01G02840.1|Name=NO01G02840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1053bp
ATGAAGTTGTTCGCAGCCGTCTTCGTGCTGGTGGCCGCCATCAGCACCAT
TTTGACAGTTAATGCCTTTGTCCCCCACCCGCCCCCCTCGCCCTTCATAG
CTGGTAGTAGCACCAGCACGATGGGCAGGACAAGGCGCTCGGCTGCCACT
CTTGTCGCCCCGACGTCGTCCATCAAGTCGAGTGTGCAAGACACCTTGAA
GCAGGCGTTTCCATCAGTCCAAATTCCTGCAGAGTTCTTGTCCGCCGTCA
GCTCCCCCGGGATGGGCACGGACTTGGAGCGAGCATTAATTCGCGGCAAG
GCATTTGCGGCCATGGCGCCGCGCGTGTTGATTACCAGGGGCTGGGACGT
GTTGTCCGACGATTTTGTGTACTACAGTAGCGCAACGGGCAAGTTGGACC
GTGCGGGATTTCTTGGCTTGGTGTGCATCATGGAACGGGCTTTGCCGGAC
TTGCAGCAATCTGCCTCTAAGTTTGAGGTGACGAGCGACGGGGCAGTGAT
GTACGTCTCGGAAGCTGTAGGCACTTTTACAGGTCAGCTTATCATCAGCG
AGACAATGCAAGAAGGCAATGGACTCAAGTACCAGGGGTTAAGGGAGGCG
TGCGTCGTGGCATTTAATGACGATGGGCAACTGCAGAGTTTGAGCGCAGG
ATTGGTAGTGGAGGAGGAAAGCGACGGCAAGGATGAGAGCGTGGCGGAGG
CAGCGCAAGTGGAGTTGATGAAACGGTTGGCCTCGCATGTGCAAAAGTTG
GAGATGACGCCGACGGGCAAGTCGGCCCGGGAAAAAATTCAACAAGACAT
CGATAGCACTCAGGCAAAGATTGACGCGTATGAAAAGGCGGGGGAGACGG
TGAAGGTGGGTACAGGGGCAGGGCTTGGAGGACTTTTGCAGGCGCTGGGA
GTCGATGTGCCGAAAGCGGAGATTTTGAGCGACGTGTTGGTGTCGCATGC
ATCGGAGCCATTGCTGGTGATGGAGGCGAGCGATCTGATCACAGTCCCGA
CGGAGTGTGATGCATTGATGGATAACATCAATCCAATGACTACAGTCTGG
TAA
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protein sequence of NO01G02840.1

>NO01G02840.1-protein ID=NO01G02840.1-protein|Name=NO01G02840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MKLFAAVFVLVAAISTILTVNAFVPHPPPSPFIAGSSTSTMGRTRRSAAT
LVAPTSSIKSSVQDTLKQAFPSVQIPAEFLSAVSSPGMGTDLERALIRGK
AFAAMAPRVLITRGWDVLSDDFVYYSSATGKLDRAGFLGLVCIMERALPD
LQQSASKFEVTSDGAVMYVSEAVGTFTGQLIISETMQEGNGLKYQGLREA
CVVAFNDDGQLQSLSAGLVVEEESDGKDESVAEAAQVELMKRLASHVQKL
EMTPTGKSAREKIQQDIDSTQAKIDAYEKAGETVKVGTGAGLGGLLQALG
VDVPKAEILSDVLVSHASEPLLVMEASDLITVPTECDALMDNINPMTTVW
*
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mRNA from alignment at chr1:735491..736543-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02840.1 ID=NO01G02840.1|Name=NO01G02840.1|organism=Nannochloropsis oceanica|type=mRNA|length=1053bp|location=Sequence derived from alignment at chr1:735491..736543- (Nannochloropsis oceanica)
ATGAAGTTGTTCGCAGCCGTCTTCGTGCTGGTGGCCGCCATCAGCACCAT
TTTGACAGTTAATGCCTTTGTCCCCCACCCGCCCCCCTCGCCCTTCATAG
CTGGTAGTAGCACCAGCACGATGGGCAGGACAAGGCGCTCGGCTGCCACT
CTTGTCGCCCCGACGTCGTCCATCAAGTCGAGTGTGCAAGACACCTTGAA
GCAGGCGTTTCCATCAGTCCAAATTCCTGCAGAGTTCTTGTCCGCCGTCA
GCTCCCCCGGGATGGGCACGGACTTGGAGCGAGCATTAATTCGCGGCAAG
GCATTTGCGGCCATGGCGCCGCGCGTGTTGATTACCAGGGGCTGGGACGT
GTTGTCCGACGATTTTGTGTACTACAGTAGCGCAACGGGCAAGTTGGACC
GTGCGGGATTTCTTGGCTTGGTGTGCATCATGGAACGGGCTTTGCCGGAC
TTGCAGCAATCTGCCTCTAAGTTTGAGGTGACGAGCGACGGGGCAGTGAT
GTACGTCTCGGAAGCTGTAGGCACTTTTACAGGTCAGCTTATCATCAGCG
AGACAATGCAAGAAGGCAATGGACTCAAGTACCAGGGGTTAAGGGAGGCG
TGCGTCGTGGCATTTAATGACGATGGGCAACTGCAGAGTTTGAGCGCAGG
ATTGGTAGTGGAGGAGGAAAGCGACGGCAAGGATGAGAGCGTGGCGGAGG
CAGCGCAAGTGGAGTTGATGAAACGGTTGGCCTCGCATGTGCAAAAGTTG
GAGATGACGCCGACGGGCAAGTCGGCCCGGGAAAAAATTCAACAAGACAT
CGATAGCACTCAGGCAAAGATTGACGCGTATGAAAAGGCGGGGGAGACGG
TGAAGGTGGGTACAGGGGCAGGGCTTGGAGGACTTTTGCAGGCGCTGGGA
GTCGATGTGCCGAAAGCGGAGATTTTGAGCGACGTGTTGGTGTCGCATGC
ATCGGAGCCATTGCTGGTGATGGAGGCGAGCGATCTGATCACAGTCCCGA
CGGAGTGTGATGCATTGATGGATAACATCAATCCAATGACTACAGTCTGG
TAA
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Coding sequence (CDS) from alignment at chr1:735491..736543-

>NO01G02840.1 ID=NO01G02840.1|Name=NO01G02840.1|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at chr1:735491..736543- (Nannochloropsis oceanica)
ATGAAGTTGTTCGCAGCCGTCTTCGTGCTGGTGGCCGCCATCAGCACCAT
TTTGACAGTTAATGCCTTTGTCCCCCACCCGCCCCCCTCGCCCTTCATAG
CTGGTAGTAGCACCAGCACGATGGGCAGGACAAGGCGCTCGGCTGCCACT
CTTGTCGCCCCGACGTCGTCCATCAAGTCGAGTGTGCAAGACACCTTGAA
GCAGGCGTTTCCATCAGTCCAAATTCCTGCAGAGTTCTTGTCCGCCGTCA
GCTCCCCCGGGATGGGCACGGACTTGGAGCGAGCATTAATTCGCGGCAAG
GCATTTGCGGCCATGGCGCCGCGCGTGTTGATTACCAGGGGCTGGGACGT
GTTGTCCGACGATTTTGTGTACTACAGTAGCGCAACGGGCAAGTTGGACC
GTGCGGGATTTCTTGGCTTGGTGTGCATCATGGAACGGGCTTTGCCGGAC
TTGCAGCAATCTGCCTCTAAGTTTGAGGTGACGAGCGACGGGGCAGTGAT
GTACGTCTCGGAAGCTGTAGGCACTTTTACAGGTCAGCTTATCATCAGCG
AGACAATGCAAGAAGGCAATGGACTCAAGTACCAGGGGTTAAGGGAGGCG
TGCGTCGTGGCATTTAATGACGATGGGCAACTGCAGAGTTTGAGCGCAGG
ATTGGTAGTGGAGGAGGAAAGCGACGGCAAGGATGAGAGCGTGGCGGAGG
CAGCGCAAGTGGAGTTGATGAAACGGTTGGCCTCGCATGTGCAAAAGTTG
GAGATGACGCCGACGGGCAAGTCGGCCCGGGAAAAAATTCAACAAGACAT
CGATAGCACTCAGGCAAAGATTGACGCGTATGAAAAGGCGGGGGAGACGG
TGAAGGTGGGTACAGGGGCAGGGCTTGGAGGACTTTTGCAGGCGCTGGGA
GTCGATGTGCCGAAAGCGGAGATTTTGAGCGACGTGTTGGTGTCGCATGC
ATCGGAGCCATTGCTGGTGATGGAGGCGAGCGATCTGATCACAGTCCCGA
CGGAGTGTGATGCATTGATGGATAACATCAATCCAATGACTACAGTCTGG
TAA
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Synonyms
Publications