NO01G02800.1, NO01G02800.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02800.1
Unique NameNO01G02800.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2178
Alignment locationchr1:725683..727860 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:725683..727860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02800.1 vs.
Match: XP_005855677.1 (hypothetical protein NGA_2007410 [Nannochloropsis gaditana CCMP526]; XP_005856304.1 hypothetical protein NGA_2007420 [Nannochloropsis gaditana CCMP526]; EKU20054.1 hypothetical protein NGA_2007420 [Nannochloropsis gaditana CCMP526]; EKU20683.1 hypothetical protein NGA_2007410 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 483.4 bits (1243), Expect = 8.700e-133
Identity = 259/509 (50.88%), Postives = 339/509 (66.60%), Query Frame = 0 
Query:    6 PFQHQQQSERLPRFAGIMCFLLSVGLLCWDYGLLEKWEGVSEAVPTMSRDLRVLQSRSVWNQWWEGSVPINTGKVGRSDDAARAAALPSLGEKTLVIYNVHHSSSSLDNLHGENVDFFLKVGVGGESEHFVDYLFLVPPAPAAPLGLKSIEGREKEVTGPPVVIPPAVNVRVLERPQDCLGCSGLQDMLSSSNYNNSDSSSGVGNETVAGLPLTREGLLSRYAHFVFVDSSVRGPFLPRYMHRPRPRRTHQNRFTAPQPTKPWTSVFTDRLSDEIKLVGRSVSCEAELHVQAPVWATDRIGLQLILEQGVLECAMDMETARERHELGATRAVVGAGYGVDCLMLRYQGLNLTRLRQIEVPCMAGDDPSIPLLNDGLPINPLEVVFVLASPHLMASDLPVRRYTDYLLGRGGVKDSEMYTERGQAVLEARRQRLARMVKECNASLDMPHMMSRCPECINHDMGKDGERIFIELYVMAGYDFRFTIEETDVTKLPHHYCESFVRYQAPDVT 515
            P  +    +R     GI+  LL +G L      + KW+ V +A P+  RDL VL SR+++  WW+ +    T +   S +    +     GEKTLVIY+VH+  S  D    EN+DFFL+VGV  ESE FVDYLFLVP A      L S  GR+ +      + P A +VRV+ERP DCLG SGL+ +++ +++             ++ +PL    LLS Y+HF+ +DS+VRGPFLPRY+HR R   +  +R+ +PQ  K W SV TDR+  E+KLVGRSVSCE ELHVQAPVWATDR GL+L+L+ GVL+CAM+  +ARERHELGATRAV+ AGY VDCLMLRYQG+NL RLR+  +PC A D+PS PLLNDGLP+NPLEV+FVLA+ H +ASD  VRRYTDY LGR  ++D++  T RGQA LEARRQRLA MV  C A+LD  H+ +RCP C++    +  + IFI+ +VM GYDF+F++  T     P  +CE+F RYQAPD+T
Sbjct:    7 PLWYGNHCQRALPCMGILFALLYIGFLLRHGDWMSKWDEV-KAGPSQ-RDLLVLNSRNLF-AWWQHNDSAFTMENDYSKEGLWESESLPFGEKTLVIYSVHNDPSH-DTTSYENLDFFLRVGVDQESERFVDYLFLVPSAIFHSFNLTS--GRKGD---DMPMFPSADHVRVMERPHDCLGTSGLRSLITDNDWRGGIKHGA----RISSIPLNMNALLSHYSHFILLDSTVRGPFLPRYVHRAR---SGGSRWDSPQAVKSWVSVLTDRVGPEVKLVGRSVSCEPELHVQAPVWATDRQGLRLLLKNGVLDCAMEEASARERHELGATRAVLNAGYHVDCLMLRYQGINLARLREYGLPCTARDNPSSPLLNDGLPVNPLEVIFVLANRHFLASDALVRRYTDYFLGRVDLEDNQATTLRGQAALEARRQRLAGMVASCGATLDRKHLATRCPGCVSGKSLEVDQEIFIQNHVMKGYDFQFSVPTTIANHPPQAFCEAFARYQAPDLT 499
The following BLAST results are available for this feature:
BLAST of NO01G02800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855677.18.700e-13350.88hypothetical protein NGA_2007410 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02800NO01G02800Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02800.1NO01G02800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02800.1.cds1NO01G02800.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02800.1 ID=NO01G02800.1|Name=NO01G02800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2178bp
ATTACGACAGCTATAGCACAGCTACGACAACGAGGACAAGGTGGCAACAG
CAGCGGACGGCGTAAGCCTGGTCCCCGTGCTCTGGAGGGAAAACGCGGAC
CCGTCTCCCGGCAGCACACGACGAAGCGCCGCACGAAGCCTGCCTAGGGC
CACCCCACACGACCGACGAGACAGCAAGCAGCATGACACTCCCCGACCCC
TTTCAGCACCAGCAGCAATCCGAGCGTCTGCCTCGGTTTGCGGGCATAAT
GTGTTTCCTTTTAAGCGTGGGCTTGCTTTGCTGGGATTACGGTCTGCTGG
AGAAATGGGAAGGGGTCTCAGAGGCAGTGCCAACGATGTCTAGAGATTTG
CGGGTCCTCCAGTCTCGAAGTGTGTGGAACCAATGGTGGGAAGGTAGCGT
ACCAATCAATACTGGGAAGGTTGGTCGCTCGGACGACGCCGCAAGGGCCG
CGGCATTGCCTTCTTTGGGGGAGAAGACGCTGGTCATTTACAACGTGCAT
CACTCTTCATCGTCGCTCGACAACTTGCACGGCGAAAACGTGGATTTCTT
TCTTAAGGTCGGCGTAGGGGGAGAGTCGGAGCACTTCGTGGACTATCTTT
TCCTGGTTCCACCTGCTCCGGCTGCTCCGCTGGGTTTGAAAAGCATTGAG
GGCAGAGAGAAAGAAGTGACGGGGCCGCCCGTTGTAATCCCTCCTGCTGT
CAACGTCCGCGTCCTGGAACGGCCGCAAGATTGCTTAGGGTGCAGCGGCC
TTCAAGATATGCTAAGTAGCAGCAATTATAATAATTCTGACAGCAGTAGC
GGCGTCGGCAACGAGACAGTTGCAGGCCTGCCGTTGACAAGAGAGGGGCT
CTTGTCCCGCTACGCGCACTTTGTCTTTGTGGATTCATCGGTGCGAGGTC
CTTTCCTACCACGCTACATGCATCGTCCCCGTCCACGAAGAACGCATCAA
AATCGCTTTACCGCCCCCCAGCCAACCAAGCCTTGGACGAGTGTGTTCAC
TGATCGACTAAGCGACGAGATAAAGCTGGTGGGGAGGTCTGTCAGTTGCG
AGGCAGAGCTCCACGTTCAGGCACCTGTGTGGGCCACAGACAGGATAGGA
CTACAGCTAATTTTGGAACAAGGCGTACTGGAGTGTGCGATGGACATGGA
GACGGCGAGGGAGCGGCACGAGCTGGGAGCGACCCGTGCAGTGGTGGGGG
CGGGGTATGGTGTGGATTGTCTTATGCTCCGGTATCAAGGCTTAAATCTG
ACACGTTTGAGGCAGATAGAGGTGCCTTGCATGGCAGGGGATGACCCGAG
CATTCCGCTGCTGAATGATGGTCTGCCAATAAATCCTTTGGAGGTGGTTT
TTGTGTTGGCGAGCCCACATTTGATGGCGTCCGACCTACCAGTGCGTCGA
TACACTGATTATTTGCTTGGTCGGGGGGGAGTGAAGGACAGCGAGATGTA
CACGGAGCGGGGACAAGCTGTATTGGAAGCAAGAAGACAGCGGTTGGCGA
GGATGGTGAAGGAGTGCAACGCAAGTTTGGATATGCCACATATGATGTCG
AGATGTCCTGAGTGTATAAACCACGACATGGGGAAGGATGGTGAAAGAAT
TTTTATAGAGCTTTATGTGATGGCTGGATATGATTTCCGGTTTACAATTG
AGGAAACTGATGTGACGAAGCTGCCGCATCATTATTGTGAATCGTTTGTG
CGGTACCAAGCCCCGGATGTGACGAGTTAAGGAAATATGCTAGATCAAGA
TGGTCTACATATCATTCATATGATTGAATGATTGAATCAACCATTTTGCT
AGAAATGATGTGTAGATAAGGTCAAAAGTGGAAACCATTGAGTCGGCTCC
GCTTGCGCGGTATCTCTTGAATTGCATGTTTTGACCCGGTAGGCCGCCAG
GATCAGGACATGGCGACATGAGAGGCGCGTGGATGATAAATGGCAGGCAT
GTGATTTTACCTGCTTCCTACGGGAACCAGCTGCTATAATAGATGGAAAG
AAAAAACGTTTATGGGAGGCTTTCTCATAGCCTCCACCTTCGTCTGGTTT
CAATGTGTACCCCAGGACGCCAAGCTAGTGGAGCAAACTCAGGCTTACTC
CCTGATAAGCATCGTCCCCTTGCCCCCCCAAAATGCATCAAGTAGGAAAG
AATAACTATCACGTTTGAACATGTATGT
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protein sequence of NO01G02800.1

>NO01G02800.1-protein ID=NO01G02800.1-protein|Name=NO01G02800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=516bp
MTLPDPFQHQQQSERLPRFAGIMCFLLSVGLLCWDYGLLEKWEGVSEAVP
TMSRDLRVLQSRSVWNQWWEGSVPINTGKVGRSDDAARAAALPSLGEKTL
VIYNVHHSSSSLDNLHGENVDFFLKVGVGGESEHFVDYLFLVPPAPAAPL
GLKSIEGREKEVTGPPVVIPPAVNVRVLERPQDCLGCSGLQDMLSSSNYN
NSDSSSGVGNETVAGLPLTREGLLSRYAHFVFVDSSVRGPFLPRYMHRPR
PRRTHQNRFTAPQPTKPWTSVFTDRLSDEIKLVGRSVSCEAELHVQAPVW
ATDRIGLQLILEQGVLECAMDMETARERHELGATRAVVGAGYGVDCLMLR
YQGLNLTRLRQIEVPCMAGDDPSIPLLNDGLPINPLEVVFVLASPHLMAS
DLPVRRYTDYLLGRGGVKDSEMYTERGQAVLEARRQRLARMVKECNASLD
MPHMMSRCPECINHDMGKDGERIFIELYVMAGYDFRFTIEETDVTKLPHH
YCESFVRYQAPDVTS*
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mRNA from alignment at chr1:725683..727860+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02800.1 ID=NO01G02800.1|Name=NO01G02800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2178bp|location=Sequence derived from alignment at chr1:725683..727860+ (Nannochloropsis oceanica)
ATTACGACAGCTATAGCACAGCTACGACAACGAGGACAAGGTGGCAACAG
CAGCGGACGGCGTAAGCCTGGTCCCCGTGCTCTGGAGGGAAAACGCGGAC
CCGTCTCCCGGCAGCACACGACGAAGCGCCGCACGAAGCCTGCCTAGGGC
CACCCCACACGACCGACGAGACAGCAAGCAGCATGACACTCCCCGACCCC
TTTCAGCACCAGCAGCAATCCGAGCGTCTGCCTCGGTTTGCGGGCATAAT
GTGTTTCCTTTTAAGCGTGGGCTTGCTTTGCTGGGATTACGGTCTGCTGG
AGAAATGGGAAGGGGTCTCAGAGGCAGTGCCAACGATGTCTAGAGATTTG
CGGGTCCTCCAGTCTCGAAGTGTGTGGAACCAATGGTGGGAAGGTAGCGT
ACCAATCAATACTGGGAAGGTTGGTCGCTCGGACGACGCCGCAAGGGCCG
CGGCATTGCCTTCTTTGGGGGAGAAGACGCTGGTCATTTACAACGTGCAT
CACTCTTCATCGTCGCTCGACAACTTGCACGGCGAAAACGTGGATTTCTT
TCTTAAGGTCGGCGTAGGGGGAGAGTCGGAGCACTTCGTGGACTATCTTT
TCCTGGTTCCACCTGCTCCGGCTGCTCCGCTGGGTTTGAAAAGCATTGAG
GGCAGAGAGAAAGAAGTGACGGGGCCGCCCGTTGTAATCCCTCCTGCTGT
CAACGTCCGCGTCCTGGAACGGCCGCAAGATTGCTTAGGGTGCAGCGGCC
TTCAAGATATGCTAAGTAGCAGCAATTATAATAATTCTGACAGCAGTAGC
GGCGTCGGCAACGAGACAGTTGCAGGCCTGCCGTTGACAAGAGAGGGGCT
CTTGTCCCGCTACGCGCACTTTGTCTTTGTGGATTCATCGGTGCGAGGTC
CTTTCCTACCACGCTACATGCATCGTCCCCGTCCACGAAGAACGCATCAA
AATCGCTTTACCGCCCCCCAGCCAACCAAGCCTTGGACGAGTGTGTTCAC
TGATCGACTAAGCGACGAGATAAAGCTGGTGGGGAGGTCTGTCAGTTGCG
AGGCAGAGCTCCACGTTCAGGCACCTGTGTGGGCCACAGACAGGATAGGA
CTACAGCTAATTTTGGAACAAGGCGTACTGGAGTGTGCGATGGACATGGA
GACGGCGAGGGAGCGGCACGAGCTGGGAGCGACCCGTGCAGTGGTGGGGG
CGGGGTATGGTGTGGATTGTCTTATGCTCCGGTATCAAGGCTTAAATCTG
ACACGTTTGAGGCAGATAGAGGTGCCTTGCATGGCAGGGGATGACCCGAG
CATTCCGCTGCTGAATGATGGTCTGCCAATAAATCCTTTGGAGGTGGTTT
TTGTGTTGGCGAGCCCACATTTGATGGCGTCCGACCTACCAGTGCGTCGA
TACACTGATTATTTGCTTGGTCGGGGGGGAGTGAAGGACAGCGAGATGTA
CACGGAGCGGGGACAAGCTGTATTGGAAGCAAGAAGACAGCGGTTGGCGA
GGATGGTGAAGGAGTGCAACGCAAGTTTGGATATGCCACATATGATGTCG
AGATGTCCTGAGTGTATAAACCACGACATGGGGAAGGATGGTGAAAGAAT
TTTTATAGAGCTTTATGTGATGGCTGGATATGATTTCCGGTTTACAATTG
AGGAAACTGATGTGACGAAGCTGCCGCATCATTATTGTGAATCGTTTGTG
CGGTACCAAGCCCCGGATGTGACGAGTTAAGGAAATATGCTAGATCAAGA
TGGTCTACATATCATTCATATGATTGAATGATTGAATCAACCATTTTGCT
AGAAATGATGTGTAGATAAGGTCAAAAGTGGAAACCATTGAGTCGGCTCC
GCTTGCGCGGTATCTCTTGAATTGCATGTTTTGACCCGGTAGGCCGCCAG
GATCAGGACATGGCGACATGAGAGGCGCGTGGATGATAAATGGCAGGCAT
GTGATTTTACCTGCTTCCTACGGGAACCAGCTGCTATAATAGATGGAAAG
AAAAAACGTTTATGGGAGGCTTTCTCATAGCCTCCACCTTCGTCTGGTTT
CAATGTGTACCCCAGGACGCCAAGCTAGTGGAGCAAACTCAGGCTTACTC
CCTGATAAGCATCGTCCCCTTGCCCCCCCAAAATGCATCAAGTAGGAAAG
AATAACTATCACGTTTGAACATGTATGT
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Coding sequence (CDS) from alignment at chr1:725683..727860+

>NO01G02800.1 ID=NO01G02800.1|Name=NO01G02800.1|organism=Nannochloropsis oceanica|type=CDS|length=1548bp|location=Sequence derived from alignment at chr1:725683..727860+ (Nannochloropsis oceanica)
ATGACACTCCCCGACCCCTTTCAGCACCAGCAGCAATCCGAGCGTCTGCC
TCGGTTTGCGGGCATAATGTGTTTCCTTTTAAGCGTGGGCTTGCTTTGCT
GGGATTACGGTCTGCTGGAGAAATGGGAAGGGGTCTCAGAGGCAGTGCCA
ACGATGTCTAGAGATTTGCGGGTCCTCCAGTCTCGAAGTGTGTGGAACCA
ATGGTGGGAAGGTAGCGTACCAATCAATACTGGGAAGGTTGGTCGCTCGG
ACGACGCCGCAAGGGCCGCGGCATTGCCTTCTTTGGGGGAGAAGACGCTG
GTCATTTACAACGTGCATCACTCTTCATCGTCGCTCGACAACTTGCACGG
CGAAAACGTGGATTTCTTTCTTAAGGTCGGCGTAGGGGGAGAGTCGGAGC
ACTTCGTGGACTATCTTTTCCTGGTTCCACCTGCTCCGGCTGCTCCGCTG
GGTTTGAAAAGCATTGAGGGCAGAGAGAAAGAAGTGACGGGGCCGCCCGT
TGTAATCCCTCCTGCTGTCAACGTCCGCGTCCTGGAACGGCCGCAAGATT
GCTTAGGGTGCAGCGGCCTTCAAGATATGCTAAGTAGCAGCAATTATAAT
AATTCTGACAGCAGTAGCGGCGTCGGCAACGAGACAGTTGCAGGCCTGCC
GTTGACAAGAGAGGGGCTCTTGTCCCGCTACGCGCACTTTGTCTTTGTGG
ATTCATCGGTGCGAGGTCCTTTCCTACCACGCTACATGCATCGTCCCCGT
CCACGAAGAACGCATCAAAATCGCTTTACCGCCCCCCAGCCAACCAAGCC
TTGGACGAGTGTGTTCACTGATCGACTAAGCGACGAGATAAAGCTGGTGG
GGAGGTCTGTCAGTTGCGAGGCAGAGCTCCACGTTCAGGCACCTGTGTGG
GCCACAGACAGGATAGGACTACAGCTAATTTTGGAACAAGGCGTACTGGA
GTGTGCGATGGACATGGAGACGGCGAGGGAGCGGCACGAGCTGGGAGCGA
CCCGTGCAGTGGTGGGGGCGGGGTATGGTGTGGATTGTCTTATGCTCCGG
TATCAAGGCTTAAATCTGACACGTTTGAGGCAGATAGAGGTGCCTTGCAT
GGCAGGGGATGACCCGAGCATTCCGCTGCTGAATGATGGTCTGCCAATAA
ATCCTTTGGAGGTGGTTTTTGTGTTGGCGAGCCCACATTTGATGGCGTCC
GACCTACCAGTGCGTCGATACACTGATTATTTGCTTGGTCGGGGGGGAGT
GAAGGACAGCGAGATGTACACGGAGCGGGGACAAGCTGTATTGGAAGCAA
GAAGACAGCGGTTGGCGAGGATGGTGAAGGAGTGCAACGCAAGTTTGGAT
ATGCCACATATGATGTCGAGATGTCCTGAGTGTATAAACCACGACATGGG
GAAGGATGGTGAAAGAATTTTTATAGAGCTTTATGTGATGGCTGGATATG
ATTTCCGGTTTACAATTGAGGAAACTGATGTGACGAAGCTGCCGCATCAT
TATTGTGAATCGTTTGTGCGGTACCAAGCCCCGGATGTGACGAGTTAA
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Synonyms
Publications