NO01G02790.1, NO01G02790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02790.1
Unique NameNO01G02790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1110
Alignment locationchr1:724060..725423 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:724060..725423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02790.1 vs.
Match: EWM29135.1 (methylmalonic aciduria type a mitochondrial [Nannochloropsis gaditana])

HSP 1 Score: 355.9 bits (912), Expect = 1.500e-94
Identity = 207/395 (52.41%), Postives = 260/395 (65.82%), Query Frame = 0 
Query:   17 PIKRLSLSMRGWIISPACTFSTSAISPRVLGLAEGVLKGDRLSLSRAITLIESSKESHRQEAEALLDHVVRERSRKVKTYRR--PNSNTAMASSSDSRSSSSSSGSTSGSLRKGTRPLRIGIAGPPGAGKSTFIESLGMYLLDSKGLRVAVIAVDPSSSRSGGSILGDKTRMYELSKDPRAFVHL--GYAVAAGAARRGDE--------------LQGVKKGIMEV-------------------------------ADVVVVNKADGHLLTAAQHTAAEYKHALCFQRRKWEPWTPTVTMCSALRREKIAKVWEEVSRCSDVLDKTGFLRLKRRDQGRHWMWSSLEDLLVRKVRGSGAVERKAVRMEEELADGTLTPRSAAEMLLVAFLEEQRT 363
            P+ +    +R   +  +  FST +++P    LAEGVL+G+RL+LSRAITLIES+KESHR +AEALLDHVV ERSR+V+   R  P ++T+ A+         +S        +  RPLR+GIAGPPGAGKSTFIE+LG YL DSK LRVAVIAVDPSSSRSGGSILGDKTRMYEL+KDP+AFV       V  G AR  ++              ++ V  G  E                                ADV+VVNKADGHLLTAAQHTAA Y+HALCFQRRKW+ W P+VT+CSAL R +IA VWE+V  CSDV  ++G+LRLKR++Q ++W+W+SLED+LVR+ R S  ++    RME+EL  GTLTPRSAAE+LL  F EEQ++
Sbjct:   20 PLTKPLTPIRSATVECSVGFSTCSMTPETRQLAEGVLRGNRLALSRAITLIESTKESHRLDAEALLDHVVYERSRRVREKGRLKPGNSTSNAACVADEGRIGTS--------ENVRPLRVGIAGPPGAGKSTFIEALGKYLTDSKKLRVAVIAVDPSSSRSGGSILGDKTRMYELAKDPKAFVRACPTSGVLGGVARYTNDVVLLCQAASFDIVFIESVGLGQSETIIDQASDMLLLLVPPAGGDELQGVKKGIMEVADVIVVNKADGHLLTAAQHTAAAYQHALCFQRRKWDAWMPSVTLCSALERHRIADVWEQVCSCSDVFRRSGYLRLKRQNQDKYWVWNSLEDILVRRARTSSKIKAGVERMEKELGKGTLTPRSAAEILLADFFEEQKS 406
The following BLAST results are available for this feature:
BLAST of NO01G02790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29135.11.500e-9452.41methylmalonic aciduria type a mitochondrial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02790NO01G02790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02790.1NO01G02790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02790.1.cds1NO01G02790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02790.1.cds2NO01G02790.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02790.1.cds3NO01G02790.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02790.1 ID=NO01G02790.1|Name=NO01G02790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1110bp
ATGCGGCGGCAGCTATGCTGCGCTGCTGCTGCTACTGCCGCAAGTACTCC
CATCAAGCGACTATCCTTGTCGATGCGAGGTTGGATCATCAGTCCAGCCT
GTACATTTTCCACCTCTGCCATAAGCCCGCGGGTCCTTGGCCTGGCCGAA
GGCGTGCTCAAGGGCGACCGTCTCTCGTTGAGCCGGGCCATAACGCTGAT
TGAGTCCTCCAAGGAAAGCCATAGACAAGAGGCTGAGGCATTATTGGACC
ACGTCGTCCGCGAGCGCAGTCGAAAGGTCAAAACATATCGGCGGCCGAAT
TCGAATACTGCTATGGCATCTAGCAGCGACAGCAGAAGCAGCAGCAGCAG
CAGCGGCAGCACCAGCGGCAGCCTCCGAAAGGGCACTCGCCCCCTGCGGA
TTGGCATCGCCGGCCCCCCAGGTGCCGGCAAGTCCACTTTTATTGAGTCC
CTGGGCATGTATTTGCTGGATAGCAAGGGACTGCGCGTAGCCGTCATCGC
GGTCGATCCCTCTTCGTCTCGCAGCGGTGGTTCAATCTTGGGGGACAAGA
CACGGATGTACGAGCTGTCTAAGGACCCTCGGGCATTCGTACACCTCGGA
TATGCTGTTGCTGCTGGTGCCGCCCGGAGGGGGGATGAGCTGCAGGGCGT
TAAAAAGGGCATTATGGAGGTGGCCGACGTGGTGGTGGTCAATAAGGCTG
ATGGCCACTTACTCACAGCTGCGCAGCACACAGCTGCTGAGTATAAACAT
GCCTTGTGTTTTCAGCGACGGAAATGGGAGCCGTGGACGCCGACTGTGAC
AATGTGTTCAGCTTTAAGAAGGGAGAAGATTGCGAAGGTCTGGGAGGAGG
TTAGTCGGTGCAGTGACGTGTTGGACAAGACAGGGTTTTTGAGGTTGAAG
AGGAGAGATCAAGGAAGGCATTGGATGTGGAGTAGTTTGGAAGATTTGCT
CGTGAGGAAGGTGAGGGGGTCGGGGGCGGTGGAACGGAAGGCGGTAAGGA
TGGAGGAGGAGCTGGCGGATGGTACCTTGACGCCACGATCGGCGGCCGAG
ATGTTGTTAGTTGCCTTTTTAGAGGAGCAACGGACCACCGAAGTGGCGAG
AAAGAAGTAG
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protein sequence of NO01G02790.1

>NO01G02790.1-protein ID=NO01G02790.1-protein|Name=NO01G02790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MRRQLCCAAAATAASTPIKRLSLSMRGWIISPACTFSTSAISPRVLGLAE
GVLKGDRLSLSRAITLIESSKESHRQEAEALLDHVVRERSRKVKTYRRPN
SNTAMASSSDSRSSSSSSGSTSGSLRKGTRPLRIGIAGPPGAGKSTFIES
LGMYLLDSKGLRVAVIAVDPSSSRSGGSILGDKTRMYELSKDPRAFVHLG
YAVAAGAARRGDELQGVKKGIMEVADVVVVNKADGHLLTAAQHTAAEYKH
ALCFQRRKWEPWTPTVTMCSALRREKIAKVWEEVSRCSDVLDKTGFLRLK
RRDQGRHWMWSSLEDLLVRKVRGSGAVERKAVRMEEELADGTLTPRSAAE
MLLVAFLEEQRTTEVARKK*
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mRNA from alignment at chr1:724060..725423-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02790.1 ID=NO01G02790.1|Name=NO01G02790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1364bp|location=Sequence derived from alignment at chr1:724060..725423- (Nannochloropsis oceanica)
ATGCGGCGGCAGCTATGCTGCGCTGCTGCTGCTACTGCCGCAAGTACTCC
CATCAAGCGACTATCCTTGTCGATGCGAGGTTGGATCATCAGTCCAGCCT
GTACATTTTCCACCTCTGCCATAAGCCCGCGGGTCCTTGGCCTGGCCGAA
GGCGTGCTCAAGGGCGACCGTCTCTCGTTGAGCCGGGCCATAACGCTGAT
TGAGTCCTCCAAGGAAAGCCATAGACAAGAGGCTGAGGCATTATTGGACC
ACGTCGTCCGCGAGCGCAGTCGAAAGGTCAAAACATATCGGCGGCCGAAT
TCGAATACTGCTATGGCATCTAGCAGCGACAGCAGAAGCAGCAGCAGCAG
CAGCGGCAGCACCAGCGGCAGCCTCCGAAAGGGCACTCGCCCCCTGCGGA
TTGGCATCGCCGGCCCCCCAGGTGCCGGCAAGTCCACTTTTATTGAGTCC
CTGGGCATGTATTTGCTGGATAGCAAGGGACTGGTGCGTCTACGGATGAG
GGGGAAAGACAATAAATCTGGATGCAGTAGAGGAGAGTAAAATGTACCAC
ATTCGCCTCACTTCTCTCATTTCTTCTACCCCTATGACCACGCACAGCGC
GTAGCCGTCATCGCGGTCGATCCCTCTTCGTCTCGCAGCGGTGGTTCAAT
CTTGGGGGACAAGACACGGATGTACGAGCTGTCTAAGGACCCTCGGGCAT
TCGTACGTGCCTGCCCGACCAGTGGGGTGCTTGGGGGGGTGGCACGCTAT
ACGAATGACGTCGTGCTGCTATGCCAGGCGGCTGCTTTTGATGTTGTATT
CATCGAGACGGTGGGGCTGGGACAATCGGAGATCATGATCGACCAGACCT
CGGATATGCTGTTGCTGCTGGTGCCGCCCGGAGGGGGGATGAGCTGCAGG
GCGTTAAAAAGGGCATTATGGAGGTGGCCGACGTGGTGGTGGTCAATAAG
GCTGATGGCCACTTACTCACAGCTGCGCAGCACACAGCTGCTGAGTATAA
ACATGCCTTGTGTTTTCAGCGACGGAAATGGGAGCCGTGGACGCCGACTG
TGACAATGTGTTCAGCTTTAAGAAGGGAGAAGATTGCGAAGGTCTGGGAG
GAGGTTAGTCGGTGCAGTGACGTGTTGGACAAGACAGGGTTTTTGAGGTT
GAAGAGGAGAGATCAAGGAAGGCATTGGATGTGGAGTAGTTTGGAAGATT
TGCTCGTGAGGAAGGTGAGGGGGTCGGGGGCGGTGGAACGGAAGGCGGTA
AGGATGGAGGAGGAGCTGGCGGATGGTACCTTGACGCCACGATCGGCGGC
CGAGATGTTGTTAGTTGCCTTTTTAGAGGAGCAACGGACCACCGAAGTGG
CGAGAAAGAAGTAG
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Coding sequence (CDS) from alignment at chr1:724060..725423-

>NO01G02790.1 ID=NO01G02790.1|Name=NO01G02790.1|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr1:724060..725423- (Nannochloropsis oceanica)
ATGCGGCGGCAGCTATGCTGCGCTGCTGCTGCTACTGCCGCAAGTACTCC
CATCAAGCGACTATCCTTGTCGATGCGAGGTTGGATCATCAGTCCAGCCT
GTACATTTTCCACCTCTGCCATAAGCCCGCGGGTCCTTGGCCTGGCCGAA
GGCGTGCTCAAGGGCGACCGTCTCTCGTTGAGCCGGGCCATAACGCTGAT
TGAGTCCTCCAAGGAAAGCCATAGACAAGAGGCTGAGGCATTATTGGACC
ACGTCGTCCGCGAGCGCAGTCGAAAGGTCAAAACATATCGGCGGCCGAAT
TCGAATACTGCTATGGCATCTAGCAGCGACAGCAGAAGCAGCAGCAGCAG
CAGCGGCAGCACCAGCGGCAGCCTCCGAAAGGGCACTCGCCCCCTGCGGA
TTGGCATCGCCGGCCCCCCAGGTGCCGGCAAGTCCACTTTTATTGAGTCC
CTGGGCATGTATTTGCTGGATAGCAAGGGACTGCGCGTAGCCGTCATCGC
GGTCGATCCCTCTTCGTCTCGCAGCGGTGGTTCAATCTTGGGGGACAAGA
CACGGATGTACGAGCTGTCTAAGGACCCTCGGGCATTCGTACACCTCGGA
TATGCTGTTGCTGCTGGTGCCGCCCGGAGGGGGGATGAGCTGCAGGGCGT
TAAAAAGGGCATTATGGAGGTGGCCGACGTGGTGGTGGTCAATAAGGCTG
ATGGCCACTTACTCACAGCTGCGCAGCACACAGCTGCTGAGTATAAACAT
GCCTTGTGTTTTCAGCGACGGAAATGGGAGCCGTGGACGCCGACTGTGAC
AATGTGTTCAGCTTTAAGAAGGGAGAAGATTGCGAAGGTCTGGGAGGAGG
TTAGTCGGTGCAGTGACGTGTTGGACAAGACAGGGTTTTTGAGGTTGAAG
AGGAGAGATCAAGGAAGGCATTGGATGTGGAGTAGTTTGGAAGATTTGCT
CGTGAGGAAGGTGAGGGGGTCGGGGGCGGTGGAACGGAAGGCGGTAAGGA
TGGAGGAGGAGCTGGCGGATGGTACCTTGACGCCACGATCGGCGGCCGAG
ATGTTGTTAGTTGCCTTTTTAGAGGAGCAACGGACCACCGAAGTGGCGAG
AAAGAAGTAG
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Synonyms
Publications