NO01G02750.1, NO01G02750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02750.1
Unique NameNO01G02750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2715
Alignment locationchr1:712396..715238 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:712396..715238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G02750.1 vs.
Match: EWM29178.1 (hypothetical protein Naga_100007g109 [Nannochloropsis gaditana])

HSP 1 Score: 215.3 bits (547), Expect = 2.000e-52
Identity = 133/237 (56.12%), Postives = 170/237 (71.73%), Query Frame = 0
Query:    4 SDGDALSKVLEHLKNVKLESEERLFAMKAQLQARASQVEEAQKRQAQLEDELDFQQSQLEELRRQQSRKHRLEALDDWKALVQQLQADRKRLGDEVDELRSERRLLIAELKKHLGETTKNRETESSSIDVDDRQLVKALAVNGGGAIAGEADALLLLEGQEAG--DLRRLRKHCEMLELQNRRSQLEIQRLREQVRRDDGLLKAWGRAAGTLGNYFGLFGGSGMRTVKKVNHPVIQV 239
            S  +AL K+LEHLKN KLE EER+FA+ A+L+A  S V+E+  RQAQ+EDELDF++S+LEEL+RQQ +KHRLE LDDWKALVQQLQADR+RLG+EVD L+ E++LL+ ELK+H  E  K     SSSI   D    +   V G G    E +A   L   E    ++R L++  E+LE +NRR+ +EI+RL EQVRR DGLL+AWGR AG+LGNY  LF G+G  T + +NHPVIQV
Sbjct:    8 SSQEALVKILEHLKNTKLEYEERIFALNAKLKAMKSVVKESDIRQAQMEDELDFRKSELEELKRQQLQKHRLERLDDWKALVQQLQADRRRLGEEVDHLQKEKQLLVMELKEHEQEKGKT----SSSI-FHDHLHCEMDGVRGSGGRHSEYEAKFSLPRDELAFEEVRFLQERVEVLENKNRRAHVEIKRLLEQVRRRDGLLQAWGRVAGSLGNYLRLFSGNG-TTFRGINHPVIQV 238          
The following BLAST results are available for this feature:
BLAST of NO01G02750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29178.12.000e-5256.12hypothetical protein Naga_100007g109 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02750NO01G02750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02750.1NO01G02750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02750.1.cds1NO01G02750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02750.1.cds2NO01G02750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02750.1 ID=NO01G02750.1|Name=NO01G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2715bp
AGGATTTGCGCACCGATCAGCCCAGCGCGGCCGGGATAATCCGGCAAGGA
TCCTCCTGCACGCCAAGGGGCTGAACCGAGCTGCGCAACATTCAGCATAA
GCCACCTGCGGGGCCAAGTCAGGAGAGAGCGAGGATCCAGGTGGCAAGCG
ACCGTGTCCCCAATTTTCTCTGGCGGCAGGGGTTCATCTGCAAAGCTTTC
TTTTGTCGACTCCACTCGTGATACCATGGTAGCATCAGATGGGGACGCGC
TAAGTAAAGTCTTGGAGCACCTGAAAAATGTCAAACTCGAGTCAGAGGAA
CGACTCTTTGCGATGAAAGCTCAACTTCAAGCCCGGGCGTCCCAAGTGGA
GGAGGCACAGAAGCGCCAAGCCCAGTTAGAAGACGAACTCGACTTTCAGC
AAAGCCAACTCGAGGAACTCCGCCGCCAGCAATCCCGAAAACACCGTTTG
GAGGCCTTGGATGATTGGAAGGCGCTCGTACAGCAACTGCAGGCAGATCG
AAAGCGGTTGGGTGATGAGGTGGATGAACTAAGGAGCGAACGGAGGCTTC
TGATTGCGGAGCTGAAGAAGCACCTGGGTGAAACAACAAAAAATAGGGAG
ACAGAATCGAGTTCAATTGATGTTGATGATCGGCAGTTGGTGAAAGCCTT
GGCGGTGAATGGTGGGGGGGCTATTGCGGGGGAAGCAGACGCGTTGCTGC
TGTTGGAGGGGCAGGAGGCGGGGGACTTGAGGCGGTTGCGGAAGCATTGT
GAGATGCTGGAACTACAGAATAGGAGGAGTCAGTTGGAGATTCAGAGATT
GCGAGAACAGGTCCGGAGGGATGATGGCTTGCTTAAGGCGTGGGGACGGG
CAGCAGGAACATTGGGGAATTATTTTGGCCTGTTTGGTGGGAGTGGGATG
AGAACGGTGAAGAAGGTGAACCATCCTGTTATCCAGGTGTAGGAAAATGC
GCGAGGCAATGAGCATTTCTTGCTGCTCTGTGCGTGTGTGTATGTATGAC
TTGTTCTTTGAAGGCATGGAATCCTCTAACAATAGTATGTATATAGAAAG
AAATGCGTGTGAGATGGAGGGACGAGAGGCATTTATCGAGAAGAATTCTG
ATGTCCTGCCGAGAAAAAAGTGGCTGAAAAGTGTGAATGATGTTTGCTCA
AAGAAAGGAAAGAAAAAGGCAAGAGCTCTTGGTATTTTGATATTGCTTCA
GTGCGAGGACATAACTTCAAGCGATTGCTTTCCCGCGTGTAAAGATGCTA
TTTTAGCCTTATCCGGCCTAGCGACACACGCACTTTGCTCTGTGCATAAT
GTTATCTACAGAAATCCCTTCCGCAATCCCTTTCTCTGCATCATATTGCT
AAAGGTGCTGCTCATACTCGCTTTAGCATCGGAGGAAGAAGAGAACAACG
ACGAGGAAGCAGGCGTCACAAGGGAAGGATTCATGCTACTGCTGTCGGTG
CTCCTGTGGTGGTATTGCCCATACAAAGTACTGGCCCCCGTGGCATCCCC
ATTGTGACCACCCTCCTTTTCCGCACCATGCACACTTCCCCGCTCCTCTT
CCTGCTTCCATCCCCCCTCATCTTCCTCAAAGTCCTCCTCCGAGGCGTAT
AAAGCAGCCACCTTATTGACAAGTTCGCGCATCCCCTTCTTCTTCTTTTG
TCCTACCCCCACATTCAACAGCCCGGCCATATGCCGGAAGGCATAGTTCT
GGTAGTTCTGTTCGATCCACGCCATTACATCTGCCTCTCCATAATAAAAA
GCCTTCACATAATTATCCACATGCATTTTCCCGCGAATCGGCCTCACTTT
ATGAATACGATCCAATCCTGCCTGCACCGCTTGCAAGTCCATACTCATCA
ACGACCGCCCTTCCGTAGAGCACCGTTCAATCCTTGCGAAAGCCTCCAAC
AGCGCGCCCATAACGCTTTGAGCCACCTCCGTCCATATCAGCAGCTGCGC
CGAGGGGGGGATGTACACGCCTACCCCCATCCCTATCACCACCCCTCCAT
CCGGTCCCTTAATCTTCTCCCATAAGTCACGGCAAGTCCCAAAAACCTTA
TCTGTGTAGGGATTTGCCTCGTCCCGGATCAGATGCTGATTCCACTGCTG
CTCTTCTATCGCATGGACCAATCCAGCAGCTCCGATCAAACGTGGAGCGG
CGCATCGATAAGTCAAAATACGAAGCTGAGAAATGGCCTCAGTGGCTGTC
TCGAGGTATGTTTCTAATGTACCGCGGTTACCTCCCAAAGCGCGATTCTT
GTCGGGCAAGATGAGGAGGACTTGGGACTGGATAGTTTTGAGAATTTCGA
GAACAAAAAGGCAGGACTCGACTGCGACGGCTCGGTTGGATAGTCCAAAC
AGAGTCTCGGCGTCTTCTAAGGTCTCGGTGATGAGCGAGGAGCATTTGAA
GTCGACTCTCCTGTTTTGGGTTAAATCAGGAAAGTAAATTAGGAAAGAGG
GGATGGGTGGGGAGGAGAGATTAAATAGGTTTGTAGATGAAGAGCAAACC
TATTTCCAATCCACCAGCTATCTGATAGTCTGTCATACTTGTCTGACCTG
ATTATTCGTTTTGACCCCACCTTCGCAACCAAACGGCGGTCCGCTCCCTC
ACTCCCATCGCTTTCCTCGTCATGACTATCATCACCGGCTGCTGCCCTTC
CGAACCCCTGAATTTTGGACACTGCTGCATGAGGCCAAGAGCGACAAGAA
GCCGAAACCACGCCT
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protein sequence of NO01G02750.1

>NO01G02750.1-protein ID=NO01G02750.1-protein|Name=NO01G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MVASDGDALSKVLEHLKNVKLESEERLFAMKAQLQARASQVEEAQKRQAQ
LEDELDFQQSQLEELRRQQSRKHRLEALDDWKALVQQLQADRKRLGDEVD
ELRSERRLLIAELKKHLGETTKNRETESSSIDVDDRQLVKALAVNGGGAI
AGEADALLLLEGQEAGDLRRLRKHCEMLELQNRRSQLEIQRLREQVRRDD
GLLKAWGRAAGTLGNYFGLFGGSGMRTVKKVNHPVIQV*
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mRNA from alignment at chr1:712396..715238+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02750.1 ID=NO01G02750.1|Name=NO01G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2843bp|location=Sequence derived from alignment at chr1:712396..715238+ (Nannochloropsis oceanica)
AGGATTTGCGCACCGATCAGCCCAGCGCGGCCGGGATAATCCGGCAAGGA TCCTCCTGCACGCCAAGGGGCTGAACCGAGCTGCGCAACATTCAGCATAA GCCACCTGCGGGGCCAAGTCAGGAGAGAGCGAGGATCCAGGTGGCAAGCG ACCGTGTCCCCAATTTTCTCTGGCGGCAGGGGTTCATCTGCAAAGCTTTC TTTTGTCGACTCCACTCGTGATACCATGGTAGCATCAGATGGGGTACGTG AATATCGACTGTGTACGCGTGCCCGCGCTTTATCCTCTTCTCCTCGTCTC CACACCTCCATTTCCCGCTTTTTGTCGCTCCATTACGCTCATTTACTCGC AAACCTATACGAATTCAACAGGACGCGCTAAGTAAAGTCTTGGAGCACCT GAAAAATGTCAAACTCGAGTCAGAGGAACGACTCTTTGCGATGAAAGCTC AACTTCAAGCCCGGGCGTCCCAAGTGGAGGAGGCACAGAAGCGCCAAGCC CAGTTAGAAGACGAACTCGACTTTCAGCAAAGCCAACTCGAGGAACTCCG CCGCCAGCAATCCCGAAAACACCGTTTGGAGGCCTTGGATGATTGGAAGG CGCTCGTACAGCAACTGCAGGCAGATCGAAAGCGGTTGGGTGATGAGGTG GATGAACTAAGGAGCGAACGGAGGCTTCTGATTGCGGAGCTGAAGAAGCA CCTGGGTGAAACAACAAAAAATAGGGAGACAGAATCGAGTTCAATTGATG TTGATGATCGGCAGTTGGTGAAAGCCTTGGCGGTGAATGGTGGGGGGGCT ATTGCGGGGGAAGCAGACGCGTTGCTGCTGTTGGAGGGGCAGGAGGCGGG GGACTTGAGGCGGTTGCGGAAGCATTGTGAGATGCTGGAACTACAGAATA GGAGGAGTCAGTTGGAGATTCAGAGATTGCGAGAACAGGTCCGGAGGGAT GATGGCTTGCTTAAGGCGTGGGGACGGGCAGCAGGAACATTGGGGAATTA TTTTGGCCTGTTTGGTGGGAGTGGGATGAGAACGGTGAAGAAGGTGAACC ATCCTGTTATCCAGGTGTAGGAAAATGCGCGAGGCAATGAGCATTTCTTG CTGCTCTGTGCGTGTGTGTATGTATGACTTGTTCTTTGAAGGCATGGAAT CCTCTAACAATAGTATGTATATAGAAAGAAATGCGTGTGAGATGGAGGGA CGAGAGGCATTTATCGAGAAGAATTCTGATGTCCTGCCGAGAAAAAAGTG GCTGAAAAGTGTGAATGATGTTTGCTCAAAGAAAGGAAAGAAAAAGGCAA GAGCTCTTGGTATTTTGATATTGCTTCAGTGCGAGGACATAACTTCAAGC GATTGCTTTCCCGCGTGTAAAGATGCTATTTTAGCCTTATCCGGCCTAGC GACACACGCACTTTGCTCTGTGCATAATGTTATCTACAGAAATCCCTTCC GCAATCCCTTTCTCTGCATCATATTGCTAAAGGTGCTGCTCATACTCGCT TTAGCATCGGAGGAAGAAGAGAACAACGACGAGGAAGCAGGCGTCACAAG GGAAGGATTCATGCTACTGCTGTCGGTGCTCCTGTGGTGGTATTGCCCAT ACAAAGTACTGGCCCCCGTGGCATCCCCATTGTGACCACCCTCCTTTTCC GCACCATGCACACTTCCCCGCTCCTCTTCCTGCTTCCATCCCCCCTCATC TTCCTCAAAGTCCTCCTCCGAGGCGTATAAAGCAGCCACCTTATTGACAA GTTCGCGCATCCCCTTCTTCTTCTTTTGTCCTACCCCCACATTCAACAGC CCGGCCATATGCCGGAAGGCATAGTTCTGGTAGTTCTGTTCGATCCACGC CATTACATCTGCCTCTCCATAATAAAAAGCCTTCACATAATTATCCACAT GCATTTTCCCGCGAATCGGCCTCACTTTATGAATACGATCCAATCCTGCC TGCACCGCTTGCAAGTCCATACTCATCAACGACCGCCCTTCCGTAGAGCA CCGTTCAATCCTTGCGAAAGCCTCCAACAGCGCGCCCATAACGCTTTGAG CCACCTCCGTCCATATCAGCAGCTGCGCCGAGGGGGGGATGTACACGCCT ACCCCCATCCCTATCACCACCCCTCCATCCGGTCCCTTAATCTTCTCCCA TAAGTCACGGCAAGTCCCAAAAACCTTATCTGTGTAGGGATTTGCCTCGT CCCGGATCAGATGCTGATTCCACTGCTGCTCTTCTATCGCATGGACCAAT CCAGCAGCTCCGATCAAACGTGGAGCGGCGCATCGATAAGTCAAAATACG AAGCTGAGAAATGGCCTCAGTGGCTGTCTCGAGGTATGTTTCTAATGTAC CGCGGTTACCTCCCAAAGCGCGATTCTTGTCGGGCAAGATGAGGAGGACT TGGGACTGGATAGTTTTGAGAATTTCGAGAACAAAAAGGCAGGACTCGAC TGCGACGGCTCGGTTGGATAGTCCAAACAGAGTCTCGGCGTCTTCTAAGG TCTCGGTGATGAGCGAGGAGCATTTGAAGTCGACTCTCCTGTTTTGGGTT AAATCAGGAAAGTAAATTAGGAAAGAGGGGATGGGTGGGGAGGAGAGATT AAATAGGTTTGTAGATGAAGAGCAAACCTATTTCCAATCCACCAGCTATC TGATAGTCTGTCATACTTGTCTGACCTGATTATTCGTTTTGACCCCACCT TCGCAACCAAACGGCGGTCCGCTCCCTCACTCCCATCGCTTTCCTCGTCA TGACTATCATCACCGGCTGCTGCCCTTCCGAACCCCTGAATTTTGGACAC TGCTGCATGAGGCCAAGAGCGACAAGAAGCCGAAACCACGCCT
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Coding sequence (CDS) from alignment at chr1:712396..715238+

>NO01G02750.1 ID=NO01G02750.1|Name=NO01G02750.1|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at chr1:712396..715238+ (Nannochloropsis oceanica)
ATGGTAGCATCAGATGGGGACGCGCTAAGTAAAGTCTTGGAGCACCTGAA
AAATGTCAAACTCGAGTCAGAGGAACGACTCTTTGCGATGAAAGCTCAAC
TTCAAGCCCGGGCGTCCCAAGTGGAGGAGGCACAGAAGCGCCAAGCCCAG
TTAGAAGACGAACTCGACTTTCAGCAAAGCCAACTCGAGGAACTCCGCCG
CCAGCAATCCCGAAAACACCGTTTGGAGGCCTTGGATGATTGGAAGGCGC
TCGTACAGCAACTGCAGGCAGATCGAAAGCGGTTGGGTGATGAGGTGGAT
GAACTAAGGAGCGAACGGAGGCTTCTGATTGCGGAGCTGAAGAAGCACCT
GGGTGAAACAACAAAAAATAGGGAGACAGAATCGAGTTCAATTGATGTTG
ATGATCGGCAGTTGGTGAAAGCCTTGGCGGTGAATGGTGGGGGGGCTATT
GCGGGGGAAGCAGACGCGTTGCTGCTGTTGGAGGGGCAGGAGGCGGGGGA
CTTGAGGCGGTTGCGGAAGCATTGTGAGATGCTGGAACTACAGAATAGGA
GGAGTCAGTTGGAGATTCAGAGATTGCGAGAACAGGTCCGGAGGGATGAT
GGCTTGCTTAAGGCGTGGGGACGGGCAGCAGGAACATTGGGGAATTATTT
TGGCCTGTTTGGTGGGAGTGGGATGAGAACGGTGAAGAAGGTGAACCATC
CTGTTATCCAGGTGTAG
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Synonyms
Publications