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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:712396..715238 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G02750.1 vs.
Match: EWM29178.1 (hypothetical protein Naga_100007g109 [Nannochloropsis gaditana]) HSP 1 Score: 215.3 bits (547), Expect = 2.000e-52 Identity = 133/237 (56.12%), Postives = 170/237 (71.73%), Query Frame = 0
Query: 4 SDGDALSKVLEHLKNVKLESEERLFAMKAQLQARASQVEEAQKRQAQLEDELDFQQSQLEELRRQQSRKHRLEALDDWKALVQQLQADRKRLGDEVDELRSERRLLIAELKKHLGETTKNRETESSSIDVDDRQLVKALAVNGGGAIAGEADALLLLEGQEAG--DLRRLRKHCEMLELQNRRSQLEIQRLREQVRRDDGLLKAWGRAAGTLGNYFGLFGGSGMRTVKKVNHPVIQV 239
S +AL K+LEHLKN KLE EER+FA+ A+L+A S V+E+ RQAQ+EDELDF++S+LEEL+RQQ +KHRLE LDDWKALVQQLQADR+RLG+EVD L+ E++LL+ ELK+H E K SSSI D + V G G E +A L E ++R L++ E+LE +NRR+ +EI+RL EQVRR DGLL+AWGR AG+LGNY LF G+G T + +NHPVIQV
Sbjct: 8 SSQEALVKILEHLKNTKLEYEERIFALNAKLKAMKSVVKESDIRQAQMEDELDFRKSELEELKRQQLQKHRLERLDDWKALVQQLQADRRRLGEEVDHLQKEKQLLVMELKEHEQEKGKT----SSSI-FHDHLHCEMDGVRGSGGRHSEYEAKFSLPRDELAFEEVRFLQERVEVLENKNRRAHVEIKRLLEQVRRRDGLLQAWGRVAGSLGNYLRLFSGNG-TTFRGINHPVIQV 238
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G02750.1 ID=NO01G02750.1|Name=NO01G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2715bp AGGATTTGCGCACCGATCAGCCCAGCGCGGCCGGGATAATCCGGCAAGGA TCCTCCTGCACGCCAAGGGGCTGAACCGAGCTGCGCAACATTCAGCATAA GCCACCTGCGGGGCCAAGTCAGGAGAGAGCGAGGATCCAGGTGGCAAGCG ACCGTGTCCCCAATTTTCTCTGGCGGCAGGGGTTCATCTGCAAAGCTTTC TTTTGTCGACTCCACTCGTGATACCATGGTAGCATCAGATGGGGACGCGC TAAGTAAAGTCTTGGAGCACCTGAAAAATGTCAAACTCGAGTCAGAGGAA CGACTCTTTGCGATGAAAGCTCAACTTCAAGCCCGGGCGTCCCAAGTGGA GGAGGCACAGAAGCGCCAAGCCCAGTTAGAAGACGAACTCGACTTTCAGC AAAGCCAACTCGAGGAACTCCGCCGCCAGCAATCCCGAAAACACCGTTTG GAGGCCTTGGATGATTGGAAGGCGCTCGTACAGCAACTGCAGGCAGATCG AAAGCGGTTGGGTGATGAGGTGGATGAACTAAGGAGCGAACGGAGGCTTC TGATTGCGGAGCTGAAGAAGCACCTGGGTGAAACAACAAAAAATAGGGAG ACAGAATCGAGTTCAATTGATGTTGATGATCGGCAGTTGGTGAAAGCCTT GGCGGTGAATGGTGGGGGGGCTATTGCGGGGGAAGCAGACGCGTTGCTGC TGTTGGAGGGGCAGGAGGCGGGGGACTTGAGGCGGTTGCGGAAGCATTGT GAGATGCTGGAACTACAGAATAGGAGGAGTCAGTTGGAGATTCAGAGATT GCGAGAACAGGTCCGGAGGGATGATGGCTTGCTTAAGGCGTGGGGACGGG CAGCAGGAACATTGGGGAATTATTTTGGCCTGTTTGGTGGGAGTGGGATG AGAACGGTGAAGAAGGTGAACCATCCTGTTATCCAGGTGTAGGAAAATGC GCGAGGCAATGAGCATTTCTTGCTGCTCTGTGCGTGTGTGTATGTATGAC TTGTTCTTTGAAGGCATGGAATCCTCTAACAATAGTATGTATATAGAAAG AAATGCGTGTGAGATGGAGGGACGAGAGGCATTTATCGAGAAGAATTCTG ATGTCCTGCCGAGAAAAAAGTGGCTGAAAAGTGTGAATGATGTTTGCTCA AAGAAAGGAAAGAAAAAGGCAAGAGCTCTTGGTATTTTGATATTGCTTCA GTGCGAGGACATAACTTCAAGCGATTGCTTTCCCGCGTGTAAAGATGCTA TTTTAGCCTTATCCGGCCTAGCGACACACGCACTTTGCTCTGTGCATAAT GTTATCTACAGAAATCCCTTCCGCAATCCCTTTCTCTGCATCATATTGCT AAAGGTGCTGCTCATACTCGCTTTAGCATCGGAGGAAGAAGAGAACAACG ACGAGGAAGCAGGCGTCACAAGGGAAGGATTCATGCTACTGCTGTCGGTG CTCCTGTGGTGGTATTGCCCATACAAAGTACTGGCCCCCGTGGCATCCCC ATTGTGACCACCCTCCTTTTCCGCACCATGCACACTTCCCCGCTCCTCTT CCTGCTTCCATCCCCCCTCATCTTCCTCAAAGTCCTCCTCCGAGGCGTAT AAAGCAGCCACCTTATTGACAAGTTCGCGCATCCCCTTCTTCTTCTTTTG TCCTACCCCCACATTCAACAGCCCGGCCATATGCCGGAAGGCATAGTTCT GGTAGTTCTGTTCGATCCACGCCATTACATCTGCCTCTCCATAATAAAAA GCCTTCACATAATTATCCACATGCATTTTCCCGCGAATCGGCCTCACTTT ATGAATACGATCCAATCCTGCCTGCACCGCTTGCAAGTCCATACTCATCA ACGACCGCCCTTCCGTAGAGCACCGTTCAATCCTTGCGAAAGCCTCCAAC AGCGCGCCCATAACGCTTTGAGCCACCTCCGTCCATATCAGCAGCTGCGC CGAGGGGGGGATGTACACGCCTACCCCCATCCCTATCACCACCCCTCCAT CCGGTCCCTTAATCTTCTCCCATAAGTCACGGCAAGTCCCAAAAACCTTA TCTGTGTAGGGATTTGCCTCGTCCCGGATCAGATGCTGATTCCACTGCTG CTCTTCTATCGCATGGACCAATCCAGCAGCTCCGATCAAACGTGGAGCGG CGCATCGATAAGTCAAAATACGAAGCTGAGAAATGGCCTCAGTGGCTGTC TCGAGGTATGTTTCTAATGTACCGCGGTTACCTCCCAAAGCGCGATTCTT GTCGGGCAAGATGAGGAGGACTTGGGACTGGATAGTTTTGAGAATTTCGA GAACAAAAAGGCAGGACTCGACTGCGACGGCTCGGTTGGATAGTCCAAAC AGAGTCTCGGCGTCTTCTAAGGTCTCGGTGATGAGCGAGGAGCATTTGAA GTCGACTCTCCTGTTTTGGGTTAAATCAGGAAAGTAAATTAGGAAAGAGG GGATGGGTGGGGAGGAGAGATTAAATAGGTTTGTAGATGAAGAGCAAACC TATTTCCAATCCACCAGCTATCTGATAGTCTGTCATACTTGTCTGACCTG ATTATTCGTTTTGACCCCACCTTCGCAACCAAACGGCGGTCCGCTCCCTC ACTCCCATCGCTTTCCTCGTCATGACTATCATCACCGGCTGCTGCCCTTC CGAACCCCTGAATTTTGGACACTGCTGCATGAGGCCAAGAGCGACAAGAA GCCGAAACCACGCCT back to topprotein sequence of NO01G02750.1 >NO01G02750.1-protein ID=NO01G02750.1-protein|Name=NO01G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp MVASDGDALSKVLEHLKNVKLESEERLFAMKAQLQARASQVEEAQKRQAQ LEDELDFQQSQLEELRRQQSRKHRLEALDDWKALVQQLQADRKRLGDEVD ELRSERRLLIAELKKHLGETTKNRETESSSIDVDDRQLVKALAVNGGGAI AGEADALLLLEGQEAGDLRRLRKHCEMLELQNRRSQLEIQRLREQVRRDD GLLKAWGRAAGTLGNYFGLFGGSGMRTVKKVNHPVIQV* back to topmRNA from alignment at chr1:712396..715238+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G02750.1 ID=NO01G02750.1|Name=NO01G02750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2843bp|location=Sequence derived from alignment at chr1:712396..715238+ (Nannochloropsis oceanica) AGGATTTGCGCACCGATCAGCCCAGCGCGGCCGGGATAATCCGGCAAGGA
TCCTCCTGCACGCCAAGGGGCTGAACCGAGCTGCGCAACATTCAGCATAA
GCCACCTGCGGGGCCAAGTCAGGAGAGAGCGAGGATCCAGGTGGCAAGCG
ACCGTGTCCCCAATTTTCTCTGGCGGCAGGGGTTCATCTGCAAAGCTTTC
TTTTGTCGACTCCACTCGTGATACCATGGTAGCATCAGATGGGGTACGTG
AATATCGACTGTGTACGCGTGCCCGCGCTTTATCCTCTTCTCCTCGTCTC
CACACCTCCATTTCCCGCTTTTTGTCGCTCCATTACGCTCATTTACTCGC
AAACCTATACGAATTCAACAGGACGCGCTAAGTAAAGTCTTGGAGCACCT
GAAAAATGTCAAACTCGAGTCAGAGGAACGACTCTTTGCGATGAAAGCTC
AACTTCAAGCCCGGGCGTCCCAAGTGGAGGAGGCACAGAAGCGCCAAGCC
CAGTTAGAAGACGAACTCGACTTTCAGCAAAGCCAACTCGAGGAACTCCG
CCGCCAGCAATCCCGAAAACACCGTTTGGAGGCCTTGGATGATTGGAAGG
CGCTCGTACAGCAACTGCAGGCAGATCGAAAGCGGTTGGGTGATGAGGTG
GATGAACTAAGGAGCGAACGGAGGCTTCTGATTGCGGAGCTGAAGAAGCA
CCTGGGTGAAACAACAAAAAATAGGGAGACAGAATCGAGTTCAATTGATG
TTGATGATCGGCAGTTGGTGAAAGCCTTGGCGGTGAATGGTGGGGGGGCT
ATTGCGGGGGAAGCAGACGCGTTGCTGCTGTTGGAGGGGCAGGAGGCGGG
GGACTTGAGGCGGTTGCGGAAGCATTGTGAGATGCTGGAACTACAGAATA
GGAGGAGTCAGTTGGAGATTCAGAGATTGCGAGAACAGGTCCGGAGGGAT
GATGGCTTGCTTAAGGCGTGGGGACGGGCAGCAGGAACATTGGGGAATTA
TTTTGGCCTGTTTGGTGGGAGTGGGATGAGAACGGTGAAGAAGGTGAACC
ATCCTGTTATCCAGGTGTAGGAAAATGCGCGAGGCAATGAGCATTTCTTG
CTGCTCTGTGCGTGTGTGTATGTATGACTTGTTCTTTGAAGGCATGGAAT
CCTCTAACAATAGTATGTATATAGAAAGAAATGCGTGTGAGATGGAGGGA
CGAGAGGCATTTATCGAGAAGAATTCTGATGTCCTGCCGAGAAAAAAGTG
GCTGAAAAGTGTGAATGATGTTTGCTCAAAGAAAGGAAAGAAAAAGGCAA
GAGCTCTTGGTATTTTGATATTGCTTCAGTGCGAGGACATAACTTCAAGC
GATTGCTTTCCCGCGTGTAAAGATGCTATTTTAGCCTTATCCGGCCTAGC
GACACACGCACTTTGCTCTGTGCATAATGTTATCTACAGAAATCCCTTCC
GCAATCCCTTTCTCTGCATCATATTGCTAAAGGTGCTGCTCATACTCGCT
TTAGCATCGGAGGAAGAAGAGAACAACGACGAGGAAGCAGGCGTCACAAG
GGAAGGATTCATGCTACTGCTGTCGGTGCTCCTGTGGTGGTATTGCCCAT
ACAAAGTACTGGCCCCCGTGGCATCCCCATTGTGACCACCCTCCTTTTCC
GCACCATGCACACTTCCCCGCTCCTCTTCCTGCTTCCATCCCCCCTCATC
TTCCTCAAAGTCCTCCTCCGAGGCGTATAAAGCAGCCACCTTATTGACAA
GTTCGCGCATCCCCTTCTTCTTCTTTTGTCCTACCCCCACATTCAACAGC
CCGGCCATATGCCGGAAGGCATAGTTCTGGTAGTTCTGTTCGATCCACGC
CATTACATCTGCCTCTCCATAATAAAAAGCCTTCACATAATTATCCACAT
GCATTTTCCCGCGAATCGGCCTCACTTTATGAATACGATCCAATCCTGCC
TGCACCGCTTGCAAGTCCATACTCATCAACGACCGCCCTTCCGTAGAGCA
CCGTTCAATCCTTGCGAAAGCCTCCAACAGCGCGCCCATAACGCTTTGAG
CCACCTCCGTCCATATCAGCAGCTGCGCCGAGGGGGGGATGTACACGCCT
ACCCCCATCCCTATCACCACCCCTCCATCCGGTCCCTTAATCTTCTCCCA
TAAGTCACGGCAAGTCCCAAAAACCTTATCTGTGTAGGGATTTGCCTCGT
CCCGGATCAGATGCTGATTCCACTGCTGCTCTTCTATCGCATGGACCAAT
CCAGCAGCTCCGATCAAACGTGGAGCGGCGCATCGATAAGTCAAAATACG
AAGCTGAGAAATGGCCTCAGTGGCTGTCTCGAGGTATGTTTCTAATGTAC
CGCGGTTACCTCCCAAAGCGCGATTCTTGTCGGGCAAGATGAGGAGGACT
TGGGACTGGATAGTTTTGAGAATTTCGAGAACAAAAAGGCAGGACTCGAC
TGCGACGGCTCGGTTGGATAGTCCAAACAGAGTCTCGGCGTCTTCTAAGG
TCTCGGTGATGAGCGAGGAGCATTTGAAGTCGACTCTCCTGTTTTGGGTT
AAATCAGGAAAGTAAATTAGGAAAGAGGGGATGGGTGGGGAGGAGAGATT
AAATAGGTTTGTAGATGAAGAGCAAACCTATTTCCAATCCACCAGCTATC
TGATAGTCTGTCATACTTGTCTGACCTGATTATTCGTTTTGACCCCACCT
TCGCAACCAAACGGCGGTCCGCTCCCTCACTCCCATCGCTTTCCTCGTCA
TGACTATCATCACCGGCTGCTGCCCTTCCGAACCCCTGAATTTTGGACAC
TGCTGCATGAGGCCAAGAGCGACAAGAAGCCGAAACCACGCCT back to topCoding sequence (CDS) from alignment at chr1:712396..715238+ >NO01G02750.1 ID=NO01G02750.1|Name=NO01G02750.1|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at chr1:712396..715238+ (Nannochloropsis oceanica) ATGGTAGCATCAGATGGGGACGCGCTAAGTAAAGTCTTGGAGCACCTGAA AAATGTCAAACTCGAGTCAGAGGAACGACTCTTTGCGATGAAAGCTCAAC TTCAAGCCCGGGCGTCCCAAGTGGAGGAGGCACAGAAGCGCCAAGCCCAG TTAGAAGACGAACTCGACTTTCAGCAAAGCCAACTCGAGGAACTCCGCCG CCAGCAATCCCGAAAACACCGTTTGGAGGCCTTGGATGATTGGAAGGCGC TCGTACAGCAACTGCAGGCAGATCGAAAGCGGTTGGGTGATGAGGTGGAT GAACTAAGGAGCGAACGGAGGCTTCTGATTGCGGAGCTGAAGAAGCACCT GGGTGAAACAACAAAAAATAGGGAGACAGAATCGAGTTCAATTGATGTTG ATGATCGGCAGTTGGTGAAAGCCTTGGCGGTGAATGGTGGGGGGGCTATT GCGGGGGAAGCAGACGCGTTGCTGCTGTTGGAGGGGCAGGAGGCGGGGGA CTTGAGGCGGTTGCGGAAGCATTGTGAGATGCTGGAACTACAGAATAGGA GGAGTCAGTTGGAGATTCAGAGATTGCGAGAACAGGTCCGGAGGGATGAT GGCTTGCTTAAGGCGTGGGGACGGGCAGCAGGAACATTGGGGAATTATTT TGGCCTGTTTGGTGGGAGTGGGATGAGAACGGTGAAGAAGGTGAACCATC CTGTTATCCAGGTGTAG back to top
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