NO01G02740.1, NO01G02740.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02740.1
Unique NameNO01G02740.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2281
Alignment locationchr1:710028..712419 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:710028..712419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02740.1 vs.
Match: EWM22450.1 (hypothetical protein Naga_100011g69 [Nannochloropsis gaditana])

HSP 1 Score: 362.8 bits (930), Expect = 1.600e-96
Identity = 195/434 (44.93%), Postives = 262/434 (60.37%), Query Frame = 0 
Query:   26 RNLSMVVIAGTILALYIMAFSYGPRKA---FKGGDQGPGAQLNAARAGRKRGQSALVETEYNQNPPFHVAFSTSCSPFQDWQSLLVFLTADMVGQKGPLTRIASGCTLEEQAALETVYAKLDQGRNKFRIHFTPDFSKDEASGETYYFYNKPGGLQHWLASPASPPD-DTVIAVIDPDFIFMRPLTAKVKADGIIFSGPIQAEDLIEEVSVGHPAAQYYGIGDKWIEFNLTYIAGEDSPALAVKSMSAWKHYSIGPPYIVAKADMVRIAQLWHSVVPRVYEGHPHLLAEMYAYSVAAAHLELPHLRLDGYMTSEAEGYGEAWPLVDLLTDESICSEDLSLHTTLLPTFLHYCQHYKVGTEFVYWKRDLDENFFSCGGSPLPLPNLEQVREYLDPISGPALSVNDRAYHKYHTFQYCQVVMKTNKALQKYKSLFC 456
            R L  V I G    L+I+    GP  A    +G +        A+    K   S     E  ++   ++ FST CS +Q+WQSL VF TAD V Q G + RIASGC+  E+  ++ +Y   D    +F++HFTP+F KD  SG++Y FYNKP GLQHWL S A+P   D ++A++DPDF+FMRPLT KVK D +++S P+   DLI+EV  GHP AQYYGIG +W +F + YIAG+DSPA  V    A ++YS+G PYI    DM +IA+ W + VPRVYE +PHLLAEMYAYS+AAAHLELPHLRLD YM S  +  GE WP VD LTD+ +CS +        P FLHYCQ Y+V   + + KR +  N F+C  SPL +   E + +     +G   ++  +   +   +  C V+ K N A  K+K+L C
Sbjct:   24 RGLGFVAIVGFSWGLFILTRLAGPVLAPISREGSENRNALDTLASVPPAKNDPSMWQWNEAPEDDRLYLVFSTDCSGYQNWQSLAVFFTADAVRQPGTIVRIASGCSEAEKKEVQKLY---DTFPVRFQVHFTPNFKKDAKSGKSYDFYNKPYGLQHWLDSKAAPKHKDAIVALLDPDFLFMRPLTYKVKQDRVLYSPPVTDGDLIDEVREGHPVAQYYGIGSQWTKFKVEYIAGKDSPASKVSISDASRYYSVGAPYIAHVKDMRKIAESWANFVPRVYEEYPHLLAEMYAYSIAAAHLELPHLRLDHYMVSNTQAAGEGWPFVDRLTDKYVCSAEAPDQGQEQPVFLHYCQFYRV-EHWGFHKRRVATNLFTC-KSPLFIMPPEDLEDTHWKDNGDKKTMYSKQEAQRAAYMLCNVIRKLNGAAVKFKNLNC 452
The following BLAST results are available for this feature:
BLAST of NO01G02740.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22450.11.600e-9644.93hypothetical protein Naga_100011g69 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02740NO01G02740Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02740.1NO01G02740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02740.1.cds1NO01G02740.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02740.1.cds2NO01G02740.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02740.1 ID=NO01G02740.1|Name=NO01G02740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2281bp
TGGGCTGATCGGTGCGCAAATCCTATGGGTGGGTGTAGTAGGGGGGCGTA
CTACCGGAATGAGGGGAGGGCGGGGACTTTTTATCAAGGAAGGCGCTCCG
TGCTGAGGGCTTGGGACGATGATGACGACAAAGATAAGGGGAAGGTGCTC
AGGTGCTGCGATTATCGAAGGTGTGGAGCGATGTCGCACGTGCTAAGAAA
AGTATGAGGCCTTCACTTCAGATGCTCGCCGGAGGACTCTCGCGAGCCCG
TCGTGAGCTCACAACGACGACGCCCAACGGCTTCCGGCCTCATGTTTTCT
TCAAATTTCATCTCGCACGACGATCGAAATGTGTACATTCGAAATGCTAT
CTCCCCAGGGGGAAGGGGGGAAGGCGACAGTAAAGTCGGATTACGTCTAT
AGCATAACTTGGGGATGTCACCACTATAGAAAATCGCTGATATGCTTATT
TTGTCTGTCTCTCCCCTCCCGCCTGGTCCTACCTCCCACACAAACATAAT
AACATCATAACATGACCACCAGCCGGTCGTAGGCAGCATTATAAACAATA
AGTTGTGCGTTTGACCTACACGCGGAGGACAACGACAGAGGGAGTATCAT
CAGCACCTTCTCGTATCCAGCAGCAGCAGCATTAGCAGCAGCACCAGCCG
CCGCAACGGCAGCATCAGCAAGGGCAGCAGCGGGAGCAGCAGCAGCAGCA
ACACATCATGAGGGTAAACAACTACAACCCGCGCCGACGCGTCTTCCAGC
ACTACCGGCCTGCTGCGTCTGTCTTTCACATACGTAATCTGTCGATGGTG
GTGATTGCAGGGACTATTCTTGCCTTGTACATCATGGCTTTCTCATATGG
TCCCAGGAAGGCCTTTAAAGGAGGCGACCAGGGGCCGGGCGCCCAGCTCA
ATGCAGCCAGAGCGGGCCGAAAACGAGGACAGTCTGCCCTGGTCGAGACC
GAGTACAACCAGAATCCTCCTTTTCACGTCGCATTTTCCACGTCATGCAG
CCCCTTCCAAGACTGGCAGTCCCTCCTCGTCTTTCTAACCGCCGACATGG
TGGGACAAAAGGGCCCACTGACGCGCATTGCTAGCGGATGCACTTTAGAG
GAGCAAGCTGCCCTCGAGACCGTGTACGCCAAATTGGACCAAGGCCGAAA
TAAATTCCGTATACACTTCACGCCCGATTTTAGCAAGGACGAAGCCTCGG
GAGAAACGTATTACTTTTACAACAAGCCGGGCGGGTTGCAGCATTGGCTG
GCAAGCCCAGCAAGCCCGCCGGACGACACGGTGATCGCTGTGATCGATCC
CGATTTTATCTTCATGCGTCCGCTCACGGCCAAGGTAAAGGCTGATGGCA
TCATATTCTCGGGCCCCATCCAAGCAGAGGACCTGATCGAAGAAGTAAGC
GTCGGGCATCCGGCTGCGCAATATTACGGAATTGGGGATAAGTGGATCGA
GTTTAATTTGACTTATATCGCTGGTGAGGACAGCCCTGCCCTTGCTGTCA
AGAGCATGTCGGCTTGGAAACACTATTCTATTGGACCCCCCTATATTGTG
GCTAAGGCTGATATGGTGCGAATTGCGCAGCTCTGGCATTCGGTCGTGCC
TCGTGTTTACGAAGGCCATCCGCATTTGCTCGCCGAGATGTATGCTTATA
GCGTGGCGGCCGCTCATTTGGAATTGCCTCATTTACGGCTTGATGGTTAT
ATGACTAGTGAAGCCGAGGGCTATGGCGAGGCCTGGCCTCTGGTGGATCT
CCTCACCGATGAAAGCATCTGCTCGGAGGACCTGTCCTTGCACACCACCC
TCCTACCCACCTTTCTTCACTACTGCCAGCACTACAAGGTCGGTACCGAA
TTTGTCTACTGGAAGCGAGACTTGGACGAGAATTTCTTCTCCTGTGGCGG
CTCCCCGCTGCCCCTCCCCAATTTGGAGCAGGTCCGCGAATACCTCGACC
CCATCTCTGGCCCGGCTCTTTCAGTCAATGACAGGGCGTATCACAAGTAT
CACACCTTCCAATATTGTCAGGTGGTCATGAAAACCAACAAGGCCCTGCA
GAAGTATAAGTCCCTCTTTTGTGACGTCGACGACAATGGCGAAGCTGCTT
TATCTATTGAATAACATAAAATTTTAACATTCGAAGATCGAAATTAACGA
TGGCTAGATTGATTACATCCCTCTCCGTTCATGTACATGAAGACAATAAA
GCAGAAAAAGTACTTTCGAAGCGCCCTTATCAAGCATTGTGCCAATATTT
TGGACCCTTTTTTCTGCCTGCTAGTCCAAAG
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protein sequence of NO01G02740.1

>NO01G02740.1-protein ID=NO01G02740.1-protein|Name=NO01G02740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MRVNNYNPRRRVFQHYRPAASVFHIRNLSMVVIAGTILALYIMAFSYGPR
KAFKGGDQGPGAQLNAARAGRKRGQSALVETEYNQNPPFHVAFSTSCSPF
QDWQSLLVFLTADMVGQKGPLTRIASGCTLEEQAALETVYAKLDQGRNKF
RIHFTPDFSKDEASGETYYFYNKPGGLQHWLASPASPPDDTVIAVIDPDF
IFMRPLTAKVKADGIIFSGPIQAEDLIEEVSVGHPAAQYYGIGDKWIEFN
LTYIAGEDSPALAVKSMSAWKHYSIGPPYIVAKADMVRIAQLWHSVVPRV
YEGHPHLLAEMYAYSVAAAHLELPHLRLDGYMTSEAEGYGEAWPLVDLLT
DESICSEDLSLHTTLLPTFLHYCQHYKVGTEFVYWKRDLDENFFSCGGSP
LPLPNLEQVREYLDPISGPALSVNDRAYHKYHTFQYCQVVMKTNKALQKY
KSLFCDVDDNGEAALSIE*
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mRNA from alignment at chr1:710028..712419-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02740.1 ID=NO01G02740.1|Name=NO01G02740.1|organism=Nannochloropsis oceanica|type=mRNA|length=2392bp|location=Sequence derived from alignment at chr1:710028..712419- (Nannochloropsis oceanica)
TGGGCTGATCGGTGCGCAAATCCTATGGGTGGGTGTAGTAGGGGGGCGTA
CTACCGGAATGAGGGGAGGGCGGGGACTTTTTATCAAGGAAGGCGCTCCG
TGCTGAGGGCTTGGGACGATGATGACGACAAAGATAAGGGGAAGGTGCTC
AGGTGCTGCGATTATCGAAGGTGTGGAGCGATGTCGCACGTGCTAAGAAA
AGTATGAGGCCTTCACTTCAGATGCTCGCCGGAGGACTCTCGCGAGCCCG
TCGTGAGCTCACAACGACGACGCCCAACGGCTTCCGGCCTCATGTTTTCT
TCAAATTTCATCTCGCACGACGATCGAAATGTGTACATTCGAAATGCTAT
CTCCCCAGGGGGAAGGGGGGAAGGCGACAGTAAAGTCGGATTACGTCTAT
AGCATAACTTGGGGATGTCACCACTATAGAAAATCGCTGATATGCTTATT
TTGTCTGTCTCTCCCCTCCCGCCTGGTCCTACCTCCCACACAAACATAAT
AACATCATAACATGACCACCAGCCGGTCGTAGGCAGCATTATAAACAATA
AGTTGTGCGTTTGACCTACACGCGGAGGACAACGACAGAGGGAGTATCAT
CAGCACCTTCTCGTATCCAGCAGCAGCAGCATTAGCAGCAGCACCAGCCG
CCGCAACGGCAGCATCAGCAAGGGCAGCAGCGGGAGCAGCAGCAGCAGCA
ACACATCATGAGGGTAAACAACTACAACCCGCGCCGACGCGTCTTCCAGC
ACTACCGGCCTGCTGCGTCTGTCTTTCACATACGTAATCTGTCGATGGTG
GTGATTGCAGGGACTATTCTTGCCTTGTACATCATGGCTTTCTCATATGG
TCCCAGGAAGGCCTTTAAAGGAGGCGACCAGGGGCCGGGCGCCCAGCTCA
ATGCAGCCAGAGCGGGCCGAAAACGAGGACAGTCTGCCCTGGTCGAGACC
GAGTACAACCAGAATCCTCCTTTTCACGTCGCATTTTCCACGGTATGTAG
AGCGATTGACCTTACCAATTTGAAAAAGAGCCAGTCGAGGATTCTGTGAG
CTCCCGCCATATCCCTCCAATCTGACTTGCCGCTTCTTCCCAATACTCCC
TAGTCATGCAGCCCCTTCCAAGACTGGCAGTCCCTCCTCGTCTTTCTAAC
CGCCGACATGGTGGGACAAAAGGGCCCACTGACGCGCATTGCTAGCGGAT
GCACTTTAGAGGAGCAAGCTGCCCTCGAGACCGTGTACGCCAAATTGGAC
CAAGGCCGAAATAAATTCCGTATACACTTCACGCCCGATTTTAGCAAGGA
CGAAGCCTCGGGAGAAACGTATTACTTTTACAACAAGCCGGGCGGGTTGC
AGCATTGGCTGGCAAGCCCAGCAAGCCCGCCGGACGACACGGTGATCGCT
GTGATCGATCCCGATTTTATCTTCATGCGTCCGCTCACGGCCAAGGTAAA
GGCTGATGGCATCATATTCTCGGGCCCCATCCAAGCAGAGGACCTGATCG
AAGAAGTAAGCGTCGGGCATCCGGCTGCGCAATATTACGGAATTGGGGAT
AAGTGGATCGAGTTTAATTTGACTTATATCGCTGGTGAGGACAGCCCTGC
CCTTGCTGTCAAGAGCATGTCGGCTTGGAAACACTATTCTATTGGACCCC
CCTATATTGTGGCTAAGGCTGATATGGTGCGAATTGCGCAGCTCTGGCAT
TCGGTCGTGCCTCGTGTTTACGAAGGCCATCCGCATTTGCTCGCCGAGAT
GTATGCTTATAGCGTGGCGGCCGCTCATTTGGAATTGCCTCATTTACGGC
TTGATGGTTATATGACTAGTGAAGCCGAGGGCTATGGCGAGGCCTGGCCT
CTGGTGGATCTCCTCACCGATGAAAGCATCTGCTCGGAGGACCTGTCCTT
GCACACCACCCTCCTACCCACCTTTCTTCACTACTGCCAGCACTACAAGG
TCGGTACCGAATTTGTCTACTGGAAGCGAGACTTGGACGAGAATTTCTTC
TCCTGTGGCGGCTCCCCGCTGCCCCTCCCCAATTTGGAGCAGGTCCGCGA
ATACCTCGACCCCATCTCTGGCCCGGCTCTTTCAGTCAATGACAGGGCGT
ATCACAAGTATCACACCTTCCAATATTGTCAGGTGGTCATGAAAACCAAC
AAGGCCCTGCAGAAGTATAAGTCCCTCTTTTGTGACGTCGACGACAATGG
CGAAGCTGCTTTATCTATTGAATAACATAAAATTTTAACATTCGAAGATC
GAAATTAACGATGGCTAGATTGATTACATCCCTCTCCGTTCATGTACATG
AAGACAATAAAGCAGAAAAAGTACTTTCGAAGCGCCCTTATCAAGCATTG
TGCCAATATTTTGGACCCTTTTTTCTGCCTGCTAGTCCAAAG
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Coding sequence (CDS) from alignment at chr1:710028..712419-

>NO01G02740.1 ID=NO01G02740.1|Name=NO01G02740.1|organism=Nannochloropsis oceanica|type=CDS|length=1407bp|location=Sequence derived from alignment at chr1:710028..712419- (Nannochloropsis oceanica)
ATGAGGGTAAACAACTACAACCCGCGCCGACGCGTCTTCCAGCACTACCG
GCCTGCTGCGTCTGTCTTTCACATACGTAATCTGTCGATGGTGGTGATTG
CAGGGACTATTCTTGCCTTGTACATCATGGCTTTCTCATATGGTCCCAGG
AAGGCCTTTAAAGGAGGCGACCAGGGGCCGGGCGCCCAGCTCAATGCAGC
CAGAGCGGGCCGAAAACGAGGACAGTCTGCCCTGGTCGAGACCGAGTACA
ACCAGAATCCTCCTTTTCACGTCGCATTTTCCACGTCATGCAGCCCCTTC
CAAGACTGGCAGTCCCTCCTCGTCTTTCTAACCGCCGACATGGTGGGACA
AAAGGGCCCACTGACGCGCATTGCTAGCGGATGCACTTTAGAGGAGCAAG
CTGCCCTCGAGACCGTGTACGCCAAATTGGACCAAGGCCGAAATAAATTC
CGTATACACTTCACGCCCGATTTTAGCAAGGACGAAGCCTCGGGAGAAAC
GTATTACTTTTACAACAAGCCGGGCGGGTTGCAGCATTGGCTGGCAAGCC
CAGCAAGCCCGCCGGACGACACGGTGATCGCTGTGATCGATCCCGATTTT
ATCTTCATGCGTCCGCTCACGGCCAAGGTAAAGGCTGATGGCATCATATT
CTCGGGCCCCATCCAAGCAGAGGACCTGATCGAAGAAGTAAGCGTCGGGC
ATCCGGCTGCGCAATATTACGGAATTGGGGATAAGTGGATCGAGTTTAAT
TTGACTTATATCGCTGGTGAGGACAGCCCTGCCCTTGCTGTCAAGAGCAT
GTCGGCTTGGAAACACTATTCTATTGGACCCCCCTATATTGTGGCTAAGG
CTGATATGGTGCGAATTGCGCAGCTCTGGCATTCGGTCGTGCCTCGTGTT
TACGAAGGCCATCCGCATTTGCTCGCCGAGATGTATGCTTATAGCGTGGC
GGCCGCTCATTTGGAATTGCCTCATTTACGGCTTGATGGTTATATGACTA
GTGAAGCCGAGGGCTATGGCGAGGCCTGGCCTCTGGTGGATCTCCTCACC
GATGAAAGCATCTGCTCGGAGGACCTGTCCTTGCACACCACCCTCCTACC
CACCTTTCTTCACTACTGCCAGCACTACAAGGTCGGTACCGAATTTGTCT
ACTGGAAGCGAGACTTGGACGAGAATTTCTTCTCCTGTGGCGGCTCCCCG
CTGCCCCTCCCCAATTTGGAGCAGGTCCGCGAATACCTCGACCCCATCTC
TGGCCCGGCTCTTTCAGTCAATGACAGGGCGTATCACAAGTATCACACCT
TCCAATATTGTCAGGTGGTCATGAAAACCAACAAGGCCCTGCAGAAGTAT
AAGTCCCTCTTTTGTGACGTCGACGACAATGGCGAAGCTGCTTTATCTAT
TGAATAA
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Synonyms
Publications