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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:698297..700478 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G02700.1 vs.
Match: EWM29182.1 (solute carrier family 35 member c2 [Nannochloropsis gaditana]) HSP 1 Score: 469.2 bits (1206), Expect = 1.700e-128 Identity = 280/525 (53.33%), Postives = 357/525 (68.00%), Query Frame = 0
Query: 1 MSVLSVELLVPIVICFLLLVAANLLQRRIRAESHPWHPWLRYVRISKYVLSWYIISISFTLCNKWVLRYWHGDGFPFPIFVTAMHMTIKFCLTRVINRCCIRPERRVRPLPLWTSLRGPIPIGVLTGVDVVLSNLSFMFISVTFYTILKSGALIWMLIWAVIMRLEPLTMEIVAICVLVSMGVSLASYGEASFSLVGFILVTAACASSGLRWALTQVMLEGKGGLGSDRQEVLHRSTLVNQLGEGEWDVDEEEDEFRGNDGHNGLQGNGGGS-SRGEVRGRDHQPEQHRRRQSTAHHPPSDQDGGSATIDASLLPPMPAPSVHHPRAFEILYHVSPASALSCVTVFLMVELQPCLRSPVFHDGASLSQLLVILILGGLISFLLVLAEVKLVKISSSLTMSMFGAVKEIITVALSMMVFHDDVSPLNVSGLLLAIVGAVWYRQYKQKPGSSLSIYLSSAGEAGGEGSSSVGGMRTPTTESVIFHLNEFSSDEEEEEEDDDRAVGRVPGDEEAVEVEMYNISRAQLA 525
M L +ELL+P + F+LL+AA LQR +R ESHPWHP+L Y RI KYVLSWY+ISI FTLCNKW+ RYW G GFP+P+ VT++HM K LTR+++RC R E RVRPLP +GP+ IG+ TG+D+ SNLSF+FISVTFYTILKSGA++W+L+WAVIMRLEPLT EIV+IC VS GV LASYGE +F+ GF+LVT ACASSGLRWALTQ+MLEG+ + R + ++RS L+ QL G DVD G GG + S ++GR + R R +TA PP D ++ S + SV HP+AFEILYH++PASA+ CV FL+VE + C++S VF D A L QLL IL++GGLISFLLVL EVKLVKISSSLTMSMFGA+KE+ITVA+SM+VFHDDVS LNV GL +AI+GA+ Y++YK+K S+ S ++ GG PTT + SS E++ ED + + V G E+EM+N + A+LA
Sbjct: 1 MPALPLELLIPAGLSFVLLLAAEALQRLVRIESHPWHPFLNYARICKYVLSWYMISIGFTLCNKWIFRYWRGSGFPYPLLVTSVHMITKVFLTRLVDRCR-RAEHRVRPLPWSLYWKGPVSIGICTGLDISFSNLSFLFISVTFYTILKSGAILWILVWAVIMRLEPLTWEIVSICAAVSFGVGLASYGETAFNSAGFVLVTLACASSGLRWALTQLMLEGEL---NGRDDSMYRSALIGQLSSGRSDVD----------------GTGGNADSDCNIQGRSDPRDCGRHRCNTARDPPL-VDHAHTPVNGS---EAHSVSVQHPQAFEILYHLTPASAIICVAAFLVVEWKSCVQSHVFKDLALLFQLLAILLVGGLISFLLVLTEVKLVKISSSLTMSMFGALKEVITVAISMVVFHDDVSLLNVFGLFVAILGAICYKRYKEKVSSAGSSNVAFGRNHGGREQLQRCSACLPTT-------SRASSIEDDSSEDGEEILQAVGGRGMDREMEMFNFNHAELA 494
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G02700.1 ID=NO01G02700.1|Name=NO01G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2016bp AACCTACAGGTCCAAACTGCCCCCACCTGCATCATGGCAAGGCGGCCCTG GCAGAGCCTGTCGCTTGGGAGAGACCAACGACTCGGAGCGGGTGAAGAGC AAGACTAGCACACGACAGGTGGGCCAAGCAAAGCGATTCTTCCACTGCGT AACAGCTTGCAGGCGGTGGCTGATCGTTTACGTCTAGCTATCCTCAGATA AGCTCACATTCACCAAGGGAGTCTATCACTGCTTCACTGCTGGCGTTGGG AGGATTCGAGAGAGGGAGGGCAAGAATCGACGGCATTACTGCATCGCTAC ATTACATGTAATAGGCATGTCAGTCCTTTCTGTTGAGCTCCTGGTCCCTA TTGTCATTTGCTTTTTGTTGTTGGTGGCGGCAAATCTTTTGCAACGGCGC ATCCGAGCCGAGTCGCATCCCTGGCATCCATGGCTTCGGTATGTCCGTAT CTCCAAGTACGTCCTGTCCTGGTATATCATCAGCATCAGTTTCACTCTTT GCAACAAGTGGGTGCTGCGGTACTGGCATGGGGACGGGTTTCCCTTCCCC ATATTTGTCACGGCCATGCATATGACAATCAAATTTTGCCTGACGCGCGT CATCAACCGTTGCTGCATCAGGCCTGAACGCCGCGTTCGCCCCTTGCCCT TGTGGACATCCCTGCGAGGCCCAATACCGATCGGGGTGCTTACGGGCGTG GACGTGGTGTTAAGTAATTTAAGCTTCATGTTTATCAGTGTCACGTTTTA CACCATCCTCAAGTCCGGTGCCTTGATTTGGATGCTGATCTGGGCCGTGA TCATGCGCCTCGAGCCCTTGACGATGGAGATTGTGGCCATATGCGTCTTG GTCAGCATGGGCGTGAGCCTGGCTAGCTACGGGGAAGCATCATTTAGCCT CGTGGGTTTCATACTCGTGACGGCTGCTTGTGCGTCTTCAGGCCTACGCT GGGCATTGACACAAGTCATGTTGGAAGGCAAAGGAGGGCTCGGCAGCGAC CGACAGGAGGTCTTGCACAGGTCGACATTGGTCAATCAATTGGGGGAGGG TGAGTGGGACGTGGACGAGGAGGAGGACGAGTTCCGTGGCAATGATGGCC ACAACGGGTTGCAAGGCAATGGTGGAGGCAGCAGTCGTGGTGAGGTTCGC GGGAGGGACCACCAGCCGGAGCAGCATCGTCGTCGACAGAGCACGGCCCA CCACCCCCCTAGTGATCAGGATGGTGGCTCGGCGACAATAGATGCGAGCC TGCTTCCGCCTATGCCCGCACCCTCGGTTCACCATCCGCGGGCCTTTGAA ATTCTGTACCACGTCTCCCCGGCCAGTGCACTGAGTTGCGTTACTGTCTT CTTGATGGTGGAGCTGCAGCCTTGCTTGCGCTCGCCTGTGTTTCATGATG GGGCTTCGCTTTCTCAGCTGCTAGTCATTCTCATCTTGGGGGGCTTAATC TCGTTTTTGCTGGTGTTGGCTGAGGTGAAGCTGGTGAAGATTTCGAGCTC GCTGACCATGAGCATGTTTGGGGCCGTCAAGGAGATAATCACCGTGGCCC TCTCCATGATGGTCTTCCACGATGACGTTTCCCCTCTCAACGTATCCGGT CTCCTGCTTGCCATTGTTGGTGCGGTCTGGTACCGGCAATACAAGCAAAA ACCCGGCTCCTCCCTCTCCATTTATCTCTCAAGCGCCGGGGAAGCTGGAG GCGAGGGAAGCAGCAGCGTGGGAGGGATGCGGACACCAACCACCGAATCA GTTATCTTCCACCTAAACGAGTTTTCGTCCGACGAGGAGGAGGAAGAAGA AGACGATGACCGAGCTGTGGGGAGGGTTCCAGGAGATGAAGAAGCTGTCG AGGTGGAGATGTACAACATAAGCCGCGCTCAACTTGCTTGAAAGTGAGAA AGTTTGAAACCGAAAATGCTGCTCCCTTCGATTGTACCGCCACTTTTGTG CATAAGAAATACATGAATAAAGTGTCAATAATTTTTTTTTTGTGACGATT AAGACTAAGGTTTGAA back to topprotein sequence of NO01G02700.1 >NO01G02700.1-protein ID=NO01G02700.1-protein|Name=NO01G02700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=525bp MSVLSVELLVPIVICFLLLVAANLLQRRIRAESHPWHPWLRYVRISKYVL SWYIISISFTLCNKWVLRYWHGDGFPFPIFVTAMHMTIKFCLTRVINRCC IRPERRVRPLPLWTSLRGPIPIGVLTGVDVVLSNLSFMFISVTFYTILKS GALIWMLIWAVIMRLEPLTMEIVAICVLVSMGVSLASYGEASFSLVGFIL VTAACASSGLRWALTQVMLEGKGGLGSDRQEVLHRSTLVNQLGEGEWDVD EEEDEFRGNDGHNGLQGNGGGSSRGEVRGRDHQPEQHRRRQSTAHHPPSD QDGGSATIDASLLPPMPAPSVHHPRAFEILYHVSPASALSCVTVFLMVEL QPCLRSPVFHDGASLSQLLVILILGGLISFLLVLAEVKLVKISSSLTMSM FGAVKEIITVALSMMVFHDDVSPLNVSGLLLAIVGAVWYRQYKQKPGSSL SIYLSSAGEAGGEGSSSVGGMRTPTTESVIFHLNEFSSDEEEEEEDDDRA VGRVPGDEEAVEVEMYNISRAQLA* back to topmRNA from alignment at chr1:698297..700478+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G02700.1 ID=NO01G02700.1|Name=NO01G02700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2182bp|location=Sequence derived from alignment at chr1:698297..700478+ (Nannochloropsis oceanica) AACCTACAGGTCCAAACTGCCCCCACCTGCATCATGGCAAGGCGGCCCTG
GCAGAGCCTGTCGCTTGGGAGAGACCAACGACTCGGAGCGGGTGAAGAGC
AAGACTAGCACACGACAGGTGGGCCAAGCAAAGCGATTCTTCCACTGCGT
AACAGCTTGCAGGCGGTGGCTGATCGTTTACGTCTAGCTATCCTCAGATA
AGCTCACATTCACCAAGGGAGTCTATCACTGCTTCACTGCTGGCGTTGGG
AGGATTCGAGAGAGGGAGGGCAAGAATCGACGGCATTACTGCATCGCTAC
ATTACATGTAATAGGCATGTCAGTCCTTTCTGTTGAGCTCCTGGTCCCTA
TTGTCATTTGCTTTTTGTTGTTGGTGGCGGCAAATCTTTTGCAACGGCGC
ATCCGAGCCGAGTCGCATCCCTGGCATCCATGGCTTCGGTATGTCCGTAT
CTCCAAGTACGTCCTGTCCTGGTATATCATCAGCATCAGTTTCACTCTTT
GCAACAAGTGGGTGCTGCGGTACTGGCATGGGGACGGGTTTCCCTTCCCC
ATATTTGTCACGGCCATGCATATGACAATCAAATTTTGCCTGACGCGCGT
CATCAACCGTTGCTGCATCAGGCCTGAACGCCGCGTTCGCCCCTTGCCCT
TGTGGACATCCCTGCGAGGCCCAATACCGATCGGGGTGCTTACGGGCGTG
GACGTGGTGTTAAGTAATTTAAGCTTCATGTTTATCAGTGTCACGTTTTA
CACCATCCTCAAGTCCGGTGCCTTGATTTGGATGCTGATCTGGGCCGTGA
TCATGCGCCTCGAGCCCTTGACGATGGAGATTGTGGCCATATGCGTCTTG
GTCAGCATGGGCGTGAGCCTGGCTAGCTACGGGGAAGCATCATTTAGCCT
CGTGGGTTTCATACTCGTGACGGCTGCTTGTGCGTCTTCAGGCCTACGCT
GGGCATTGACACAAGTCATGTTGGAAGGCAAAGGAGGGCTCGGCAGCGAC
CGACAGGAGGTCTTGCACAGGTCGACATTGGTCAATCAATTGGGGGAGGG
TGAGTGGGACGTGGACGAGGAGGAGGACGAGTTCCGTGGCAATGATGGCC
ACAACGGGTTGCAAGGCAATGGTGGAGGCAGCAGTCGTGGTGAGGTTCGC
GGGAGGGACCACCAGCCGGAGCAGCATCGTCGTCGACAGAGCACGGCCCA
CCACCCCCCTAGTGATCAGGATGGTGGCTCGGCGACAATAGATGCGAGCC
TGCTTCCGCCTATGCCCGCACCCTCGGTTCACCATCCGCGGGCCTTTGAA
ATTCTGTACCACGTCTCCCCGGCCAGTGCACTGAGTTGCGTTACTGTCTT
CTTGATGGTGGAGCTGCAGCCTTGCTTGCGCTCGCCTGTGTTTCATGATG
GGGCTTCGCTTTCTCAGCTGCTAGTCATTCTCATCTTGGGGGGCTTAATC
TCGTTTTTGCTGGTGTTGGCTGAGGTGAAGCTGGTGAAGATTTCGAGCTC
GCTGACCATGAGCATGTTTGGGGCCGTCAAGGAGGTATGTGGATCATCTT
TTTTCTCCGGAGAGGAAGGGTTCCTCTTTCAAAGCTAGTATCTTTATCCC
GAAACGGTGGGGTATGTTACCACGTTTTTGGCATTTGTTTGCCATCTCTC
TACAGATTTACATCTCACACGTTTCCTCCAAATTAACCTACCCATGCCAG
ATAATCACCGTGGCCCTCTCCATGATGGTCTTCCACGATGACGTTTCCCC
TCTCAACGTATCCGGTCTCCTGCTTGCCATTGTTGGTGCGGTCTGGTACC
GGCAATACAAGCAAAAACCCGGCTCCTCCCTCTCCATTTATCTCTCAAGC
GCCGGGGAAGCTGGAGGCGAGGGAAGCAGCAGCGTGGGAGGGATGCGGAC
ACCAACCACCGAATCAGTTATCTTCCACCTAAACGAGTTTTCGTCCGACG
AGGAGGAGGAAGAAGAAGACGATGACCGAGCTGTGGGGAGGGTTCCAGGA
GATGAAGAAGCTGTCGAGGTGGAGATGTACAACATAAGCCGCGCTCAACT
TGCTTGAAAGTGAGAAAGTTTGAAACCGAAAATGCTGCTCCCTTCGATTG
TACCGCCACTTTTGTGCATAAGAAATACATGAATAAAGTGTCAATAATTT
TTTTTTTGTGACGATTAAGACTAAGGTTTGAA back to topCoding sequence (CDS) from alignment at chr1:698297..700478+ >NO01G02700.1 ID=NO01G02700.1|Name=NO01G02700.1|organism=Nannochloropsis oceanica|type=CDS|length=1575bp|location=Sequence derived from alignment at chr1:698297..700478+ (Nannochloropsis oceanica) ATGTCAGTCCTTTCTGTTGAGCTCCTGGTCCCTATTGTCATTTGCTTTTT GTTGTTGGTGGCGGCAAATCTTTTGCAACGGCGCATCCGAGCCGAGTCGC ATCCCTGGCATCCATGGCTTCGGTATGTCCGTATCTCCAAGTACGTCCTG TCCTGGTATATCATCAGCATCAGTTTCACTCTTTGCAACAAGTGGGTGCT GCGGTACTGGCATGGGGACGGGTTTCCCTTCCCCATATTTGTCACGGCCA TGCATATGACAATCAAATTTTGCCTGACGCGCGTCATCAACCGTTGCTGC ATCAGGCCTGAACGCCGCGTTCGCCCCTTGCCCTTGTGGACATCCCTGCG AGGCCCAATACCGATCGGGGTGCTTACGGGCGTGGACGTGGTGTTAAGTA ATTTAAGCTTCATGTTTATCAGTGTCACGTTTTACACCATCCTCAAGTCC GGTGCCTTGATTTGGATGCTGATCTGGGCCGTGATCATGCGCCTCGAGCC CTTGACGATGGAGATTGTGGCCATATGCGTCTTGGTCAGCATGGGCGTGA GCCTGGCTAGCTACGGGGAAGCATCATTTAGCCTCGTGGGTTTCATACTC GTGACGGCTGCTTGTGCGTCTTCAGGCCTACGCTGGGCATTGACACAAGT CATGTTGGAAGGCAAAGGAGGGCTCGGCAGCGACCGACAGGAGGTCTTGC ACAGGTCGACATTGGTCAATCAATTGGGGGAGGGTGAGTGGGACGTGGAC GAGGAGGAGGACGAGTTCCGTGGCAATGATGGCCACAACGGGTTGCAAGG CAATGGTGGAGGCAGCAGTCGTGGTGAGGTTCGCGGGAGGGACCACCAGC CGGAGCAGCATCGTCGTCGACAGAGCACGGCCCACCACCCCCCTAGTGAT CAGGATGGTGGCTCGGCGACAATAGATGCGAGCCTGCTTCCGCCTATGCC CGCACCCTCGGTTCACCATCCGCGGGCCTTTGAAATTCTGTACCACGTCT CCCCGGCCAGTGCACTGAGTTGCGTTACTGTCTTCTTGATGGTGGAGCTG CAGCCTTGCTTGCGCTCGCCTGTGTTTCATGATGGGGCTTCGCTTTCTCA GCTGCTAGTCATTCTCATCTTGGGGGGCTTAATCTCGTTTTTGCTGGTGT TGGCTGAGGTGAAGCTGGTGAAGATTTCGAGCTCGCTGACCATGAGCATG TTTGGGGCCGTCAAGGAGATAATCACCGTGGCCCTCTCCATGATGGTCTT CCACGATGACGTTTCCCCTCTCAACGTATCCGGTCTCCTGCTTGCCATTG TTGGTGCGGTCTGGTACCGGCAATACAAGCAAAAACCCGGCTCCTCCCTC TCCATTTATCTCTCAAGCGCCGGGGAAGCTGGAGGCGAGGGAAGCAGCAG CGTGGGAGGGATGCGGACACCAACCACCGAATCAGTTATCTTCCACCTAA ACGAGTTTTCGTCCGACGAGGAGGAGGAAGAAGAAGACGATGACCGAGCT GTGGGGAGGGTTCCAGGAGATGAAGAAGCTGTCGAGGTGGAGATGTACAA CATAAGCCGCGCTCAACTTGCTTGA back to top
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