NO01G02640.3, NO01G02640.3 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02640.3
Unique NameNO01G02640.3
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2238
Alignment locationchr1:682533..684872 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:682533..684872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02640.3 vs.
Match: EWM29191.1 (l-asparaginase i [Nannochloropsis gaditana])

HSP 1 Score: 422.5 bits (1085), Expect = 9.900e-115
Identity = 203/255 (79.61%), Postives = 224/255 (87.84%), Query Frame = 0 
Query:   22 MLTQIGEGKKAKKVLVIVTGGTLIMKPSGTGGTLDVCPGFLSELLALPEWRHENLPDIDVLEWDHLTDSACMGPEHWIKIAEEIESAYFRYEGFVVVHGTDTLAYSASALAFMFENLGKPVVFTGSQIPLAEVYSDARNNLVSSLLFACRQDFQEVCIVFGSRLLRGCRTTKVHSFDLQAFASPNFPPLATLGVNLEFASNISLPPPRKPLRVHKDMDANLVVVRLVPGFEDDALFAMINHSRHLHGIILLLYGT 277
            M  ++G   KAKKVLVIVTGGTLIMKP+   G LDVCPGFLSELLA  EWRH NLP+IDVLEW  LTDSACMGPEHWIKIA +IE AYF Y+GFVVVHGTDTLAYSASALAFM E+LGKPV+FTGSQIPLAEVY+DARNNLV+SLLFACRQDF EVCI FG+RLLRGCR TK+ SFDLQAFASPNFPPLAT+GVNLE +S+ SL PPRK +RVHK MD+NL+V+RLVPGFEDD+L AM+ HS  LHGIILLLYGT
Sbjct:    1 MHARLGHDNKAKKVLVIVTGGTLIMKPNAGDGALDVCPGFLSELLASSEWRHRNLPEIDVLEWTILTDSACMGPEHWIKIATDIEKAYFEYDGFVVVHGTDTLAYSASALAFMLEDLGKPVIFTGSQIPLAEVYTDARNNLVTSLLFACRQDFHEVCIFFGNRLLRGCRATKIDSFDLQAFASPNFPPLATVGVNLEISSHFSL-PPRKTMRVHKKMDSNLIVIRLVPGFEDDSLIAMVIHSTQLHGIILLLYGT 254
The following BLAST results are available for this feature:
BLAST of NO01G02640.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29191.19.900e-11579.61l-asparaginase i [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02640NO01G02640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02640.3NO01G02640.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02640.3.cds1NO01G02640.3.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02640.3 ID=NO01G02640.3|Name=NO01G02640.3|organism=Nannochloropsis oceanica|type=mRNA|length=2238bp
TCGGAGCTTGCTATTTACCCCTGTGTTATTGAATGGTATGGTATGTGGGA
TGTGATGGCGTGCATCTCCAGTATGAATAGAATATTGTGCATCTGCTCTG
GACAGGGCAAGTAAGGCAAGAGCTACGTCGCTCGTCTGCAGGGTGTGTCC
GGACGGAAAGGCGTTACCAGTTCAGATATGGAAAAGTTGCCTGGGTGCAT
TGCCTGCGTTGTGGAGGGCTCTTGGGGGAATTTCGTGTATCTCTGCATTA
AAACCTCAAAGCTTGTCGTCCCGAGAGCAGTGCTATTTTCCCTCGTACCC
GACGATTTTGAATTACCCGCGTCGTGCACGGAACGATCATGATGACATCT
CAAATTCGCGGCCTTCGCGCTCGCTGACTCCATCATCGCCAACCGTTGCC
CTGATACCACTTGTTCACAACGCTTACAGAGCGTGGTAACGAGCTTGGTT
GGGTCGGGCTTGCTGCAGGCAAAAAAGGCAAGGGCTTCACTAGGGGCTTC
GTGTGCATCTCGCGCCAAAATCATGGCAGGCTTCTCTATTCAGTATCTGC
AGTGCAGATTCTGCACGCACGTCAAACTCTCAAGCCTTTCTTCAAAACAA
ACATAATAGTGTAGATAGTACACATAAGGCCATTTAATCCTGCTGGCACG
TTAAGCCAAGCGGGTCTTTAACGCATGCCCCACCCTACACCTGCTGCTAA
AACAACACTGGTCGCCCTTACTCAGGACAGTCCAAGAATGCTCACGCAAA
TTGGGGAGGGCAAAAAAGCCAAAAAAGTCCTGGTCATCGTAACAGGCGGG
ACGCTAATCATGAAGCCCAGCGGCACAGGAGGTACATTGGATGTTTGCCC
GGGATTTCTCTCGGAGCTCTTGGCTTTGCCGGAATGGCGGCATGAGAATC
TACCCGATATAGACGTTTTGGAATGGGATCACCTCACCGATAGTGCCTGT
ATGGGGCCGGAGCATTGGATCAAGATTGCGGAGGAAATTGAGAGTGCCTA
TTTTCGGTACGAAGGCTTCGTAGTCGTGCACGGTACAGACACACTTGCCT
ACTCGGCGAGTGCATTGGCCTTCATGTTTGAGAACCTTGGAAAGCCAGTC
GTGTTCACCGGGAGTCAAATTCCGCTGGCTGAGGTGTACTCAGACGCGCG
AAACAATCTTGTGAGCTCGCTGCTCTTTGCATGCCGACAAGATTTTCAGG
AAGTGTGCATTGTTTTCGGTTCCCGGCTGTTACGGGGCTGTCGGACCACC
AAGGTTCACTCTTTTGACTTGCAAGCCTTTGCCTCGCCCAACTTTCCCCC
CTTGGCCACCCTCGGCGTCAACTTGGAGTTTGCATCAAATATTTCGCTTC
CACCACCGCGCAAGCCATTGCGGGTACACAAAGATATGGATGCCAATTTG
GTCGTTGTGCGGCTCGTGCCGGGCTTTGAGGACGACGCGTTATTTGCCAT
GATCAACCACAGCCGGCACTTGCATGGGATTATTCTGCTTTTATACGGTA
CGCAGGAAAGAAAGTTTTAAGCCATATGACGTTTGAATTGGAGGACGAGC
CGTCATAAGTATAGTAATTTGTTTTTTCCACCTCCTGTTCGCTCGAGCTC
CTTGCGCCGTCCGTCTCACCCTCCTCCGATTCGTTGCCCTAGGTACGGGC
AACGGCGACACATCCAGTCGCTCGGGTTTGCTGGAGGCTGTTACGCTTGC
CGCGCAAAAGGGTATACTTGTGGTCGTCCTAACTCAATGCTTCCAAGGTG
GAGTCTTGCTTGACAAGTACAGTGTGGGGGTGGCTTTGTGCGCCGCTGGG
GTTGTCAGTGGCCATGACATGACAGTCGAGGCCTGCGTCACGAAGATTTC
TTATCTCTTTTCTCGGACGGGCGGGGACATCGATAAGGTGAAGAGCCTGC
TTAGTGTCGACTTGCGCGGTGAGCTTTCGAATGATTCCCGTTATCGCAGT
GCCATCAAGGATGTGGTACCGCTGGCCAAGCTGTAAAGCAAAAAGTAATA
TCATGACATACATGCTTTTCGTGGCGTTGTCGTTATCTCATGTCCATGCC
GTTCAGCCCCCAAAAAACATAGTGTCTGGGGACGGAGGAAAGTCAATGGG
TGCAAATCGAGGGATTCTCAGACACGAAAAATCTTGGGATATTTTTGTAC
ATCAGGGTAATTGAGATGAGAGTTTATGTCTGTGTACATTATTATTCCTC
TGTATGATGAAAGTAAACAAGCAGAGTACGCGTGCACA
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protein sequence of NO01G02640.3

>NO01G02640.3-protein ID=NO01G02640.3-protein|Name=NO01G02640.3|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MPHPTPAAKTTLVALTQDSPRMLTQIGEGKKAKKVLVIVTGGTLIMKPSG
TGGTLDVCPGFLSELLALPEWRHENLPDIDVLEWDHLTDSACMGPEHWIK
IAEEIESAYFRYEGFVVVHGTDTLAYSASALAFMFENLGKPVVFTGSQIP
LAEVYSDARNNLVSSLLFACRQDFQEVCIVFGSRLLRGCRTTKVHSFDLQ
AFASPNFPPLATLGVNLEFASNISLPPPRKPLRVHKDMDANLVVVRLVPG
FEDDALFAMINHSRHLHGIILLLYGTQERKF*
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mRNA from alignment at chr1:682533..684872+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02640.3 ID=NO01G02640.3|Name=NO01G02640.3|organism=Nannochloropsis oceanica|type=mRNA|length=2340bp|location=Sequence derived from alignment at chr1:682533..684872+ (Nannochloropsis oceanica)
TCGGAGCTTGCTATTTACCCCTGTGTTATTGAATGGTATGGTATGTGGGA
TGTGATGGCGTGCATCTCCAGTATGAATAGAATATTGTGCATCTGCTCTG
GACAGGGCAAGTAAGGCAAGAGCTACGTCGCTCGTCTGCAGGGTGTGTCC
GGACGGAAAGGCGTTACCAGTTCAGATATGGAAAAGTTGCCTGGGTGCAT
TGCCTGCGTTGTGGAGGGCTCTTGGGGGAATTTCGTGTATCTCTGCATTA
AAACCTCAAAGCTTGTCGTCCCGAGAGCAGTGCTATTTTCCCTCGTACCC
GACGATTTTGAATTACCCGCGTCGTGCACGGAACGATCATGATGACATCT
CAAATTCGCGGCCTTCGCGCTCGCTGACTCCATCATCGCCAACCGTTGCC
CTGATACCACTTGTTCACAACGCTTACAGAGCGTGGTAACGAGCTTGGTT
GGGTCGGGCTTGCTGCAGGCAAAAAAGGCAAGGGCTTCACTAGGGGCTTC
GTGTGCATCTCGCGCCAAAATCATGGCAGGCTTCTCTATTCAGTATCTGC
AGTGCAGATTCTGCACGCACGTCAAACTCTCAAGCCTTTCTTCAAAACAA
ACATAATAGTGTAGATAGTACACATAAGGCCATTTAATCCTGCTGGCACG
TTAAGCCAAGCGGGTCTTTAACGCATGCCCCACCCTACACCTGCTGCTAA
AACAACACTGGTCGCCCTTACTCAGGACAGTCCAAGAATGCTCACGCAAA
TTGGGGAGGGCAAAAAAGCCAAAAAAGTCCTGGTCATCGTAACAGGCGGG
ACGCTAATCATGAAGCCCAGCGGCACAGGAGGTACATTGGATGTTTGCCC
GGGATTTCTCTCGGAGCTCTTGGCTTTGCCGGAATGGCGGCATGAGAATC
TACCCGATATAGACGTTTTGGAATGGGATCACCTCACCGATAGTGCCTGT
ATGGGGCCGGAGCATTGGATCAAGATTGCGGAGGAAATTGAGAGTGCCTA
TTTTCGGTACGAAGGCTTCGTAGTCGTGCACGGTACAGACACACTTGCCT
ACTCGGCGAGTGCATTGGCCTTCATGTTTGAGAACCTTGGAAAGCCAGTC
GTGTTCACCGGGAGTCAAATTCCGCTGGCTGAGGTGTACTCAGACGCGCG
AAACAATCTTGTGAGCTCGCTGCTCTTTGCATGCCGACAAGATTTTCAGG
AAGTGTGCATTGTTTTCGGTTCCCGGCTGTTACGGGGCTGTCGGACCACC
AAGGTTCACTCTTTTGACTTGCAAGCCTTTGCCTCGCCCAACTTTCCCCC
CTTGGCCACCCTCGGCGTCAACTTGGAGTTTGCATCAAATATTTCGCTTC
CACCACCGCGCAAGCCATTGCGGGTACACAAAGATATGGATGCCAATTTG
GTCGTTGTGCGGCTCGTGCCGGGCTTTGAGGACGACGCGTTATTTGCCAT
GATCAACCACAGCCGGCACTTGCATGGGATTATTCTGCTTTTATACGGTA
CGCAGGAAAGAAAGTTTTAAGCCATATGACGTTTGAATTGGAGGACGAGC
CGTCATAAGTATAGTAATTTGTTTTTTCCACCTCCTGTTCGCTCGAGCTC
CTTGCGCCGTCCGTCTCACCCTCCTCCGATTCGTTGCCCTAGGTACGGGC
AACGGCGACACATCCAGTCGCTCGGGTTTGCTGGAGGCTGTTACGCTTGC
CGCGCAAAAGGGTATACTTGTGGTCGTCCTAACTCAATGCTTCCAAGGTG
GAGTCTTGCTTGACAAGTACAGTGTGGGGGTGGCTTTGTGCGCCGCTGGG
GTTGTCAGTGGTACGTTGGGATTGAGGGGAAGGAGGAAGGGACTTAAGCT
ATATGCTTCTCTAATTGTCTTCTACCGTACTCAGTAGTTCCTCCCTTCCC
TTCCTCCATCAGGCCATGACATGACAGTCGAGGCCTGCGTCACGAAGATT
TCTTATCTCTTTTCTCGGACGGGCGGGGACATCGATAAGGTGAAGAGCCT
GCTTAGTGTCGACTTGCGCGGTGAGCTTTCGAATGATTCCCGTTATCGCA
GTGCCATCAAGGATGTGGTACCGCTGGCCAAGCTGTAAAGCAAAAAGTAA
TATCATGACATACATGCTTTTCGTGGCGTTGTCGTTATCTCATGTCCATG
CCGTTCAGCCCCCAAAAAACATAGTGTCTGGGGACGGAGGAAAGTCAATG
GGTGCAAATCGAGGGATTCTCAGACACGAAAAATCTTGGGATATTTTTGT
ACATCAGGGTAATTGAGATGAGAGTTTATGTCTGTGTACATTATTATTCC
TCTGTATGATGAAAGTAAACAAGCAGAGTACGCGTGCACA
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Coding sequence (CDS) from alignment at chr1:682533..684872+

>NO01G02640.3 ID=NO01G02640.3|Name=NO01G02640.3|organism=Nannochloropsis oceanica|type=CDS|length=846bp|location=Sequence derived from alignment at chr1:682533..684872+ (Nannochloropsis oceanica)
ATGCCCCACCCTACACCTGCTGCTAAAACAACACTGGTCGCCCTTACTCA
GGACAGTCCAAGAATGCTCACGCAAATTGGGGAGGGCAAAAAAGCCAAAA
AAGTCCTGGTCATCGTAACAGGCGGGACGCTAATCATGAAGCCCAGCGGC
ACAGGAGGTACATTGGATGTTTGCCCGGGATTTCTCTCGGAGCTCTTGGC
TTTGCCGGAATGGCGGCATGAGAATCTACCCGATATAGACGTTTTGGAAT
GGGATCACCTCACCGATAGTGCCTGTATGGGGCCGGAGCATTGGATCAAG
ATTGCGGAGGAAATTGAGAGTGCCTATTTTCGGTACGAAGGCTTCGTAGT
CGTGCACGGTACAGACACACTTGCCTACTCGGCGAGTGCATTGGCCTTCA
TGTTTGAGAACCTTGGAAAGCCAGTCGTGTTCACCGGGAGTCAAATTCCG
CTGGCTGAGGTGTACTCAGACGCGCGAAACAATCTTGTGAGCTCGCTGCT
CTTTGCATGCCGACAAGATTTTCAGGAAGTGTGCATTGTTTTCGGTTCCC
GGCTGTTACGGGGCTGTCGGACCACCAAGGTTCACTCTTTTGACTTGCAA
GCCTTTGCCTCGCCCAACTTTCCCCCCTTGGCCACCCTCGGCGTCAACTT
GGAGTTTGCATCAAATATTTCGCTTCCACCACCGCGCAAGCCATTGCGGG
TACACAAAGATATGGATGCCAATTTGGTCGTTGTGCGGCTCGTGCCGGGC
TTTGAGGACGACGCGTTATTTGCCATGATCAACCACAGCCGGCACTTGCA
TGGGATTATTCTGCTTTTATACGGTACGCAGGAAAGAAAGTTTTAA
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Synonyms
Publications