NO01G02620.1, NO01G02620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02620.1
Unique NameNO01G02620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1473
Alignment locationchr1:677509..679118 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:677509..679118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G02620.1 vs.
Match: EWM29192.1 (peptidase [Nannochloropsis gaditana])

HSP 1 Score: 730.7 bits (1885), Expect = 3.000e-207
Identity = 341/480 (71.04%), Postives = 404/480 (84.17%), Query Frame = 0
Query:    1 MSTVHPELKELLGQTPSELTDKLEEQTLVLLQALIRNACVNRGDGECQEIKNIQTLAAFLDKYGLPYQIHHPSNRPNRPSLIAEYRGDGGEGPRLMLGPAHVDVVPVNEAAWKVPPFEGRVVNGELWGRGAIDMLNTVAAQAVAFACLATSRVPLRGTLLFCAVSDEEAGGADGAAFLMKDRVLRGVFKSDYCMTEFGGATLIDRNRRPTTTYFHVNGEKGMTSFEVLCKGTPGHGSLPLNGDNALVKAAGAIKCLADYWAPTIITPEWRNVISASDAPWIVRACLTSTWLARPFIRFLLWLKHPLGPIAHALTRLTISPNHLTGTLKSNVVPGSVAIEVDGRLMPGQDEAYLVKQVERALGKRRMASGEYEINIKHFFPATTSTIDTPLWRAMEKAAGVLVPGAKFVCGLLTGATDSRFFRRDCGAVAYGTSLFCPTLTMDRLVEMIHGNNERIPIESIGMSVQYFVLTSLYMLGGSVE 481
            M  +HP ++ELLG+ P E+ + LEE T+ LLQ+LIRNACVN GDG C+E+ NI+TLAAF DKYG+ YQ++HP +RPNRPSLIAEY G  G GPR+MLGP HVDVVP NE AW VPPFE R+V GE+WGRG++DMLNTVAAQAVAFACLATSR+P+RGTL+FCAVSDEEAGGADGA FLM +  LR +F++DYCMTEFGGATL DR  RP+ TY+HV+GEKG  +  V+CKG PGHGSLP + DNALVKAA  ++CLA+YW+PTIITPEWRN+++ASDAPWIVR CLTS W A   IR LL L HPLG  AHA TRLT+SPNHLTGT KSNVVPG+  +EVDGRLMPGQD+AYL++Q+ERALG+RRMASG+YEI I+HFFPATTS +DTPLW+AMEKA  +LV G  FV GLLTGATDSRFFR  CGA+AYGTSLF P LT+D+L++ IHG+NERI + S+G+SVQYFVLT LYMLG + E
Sbjct:    1 MGLLHPAVRELLGEAP-EIGEDLEELTVSLLQSLIRNACVNCGDGSCEEVTNIRTLAAFFDKYGIKYQVYHPPHRPNRPSLIAEYHGGTGIGPRVMLGPGHVDVVPANEKAWDVPPFEARLVGGEVWGRGSLDMLNTVAAQAVAFACLATSRLPMRGTLIFCAVSDEEAGGADGAGFLMNEPKLRDIFRADYCMTEFGGATLPDRYNRPSRTYYHVSGEKGTATINVVCKGRPGHGSLPKSCDNALVKAAEVVRCLANYWSPTIITPEWRNIMAASDAPWIVRTCLTSAWFAPAIIRLLLLLGHPLGSAAHASTRLTLSPNHLTGTHKSNVVPGTAVVEVDGRLMPGQDKAYLIRQLERALGRRRMASGDYEIRIRHFFPATTSPVDTPLWKAMEKAGRMLVDGTTFVNGLLTGATDSRFFRHHCGAIAYGTSLFQPELTLDKLMKSIHGDNERISVASLGISVQYFVLTILYMLGAAEE 479          
The following BLAST results are available for this feature:
BLAST of NO01G02620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29192.13.000e-20771.04peptidase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02620NO01G02620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02620.1NO01G02620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02620.1.cds1NO01G02620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02620.1.cds2NO01G02620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02620.1 ID=NO01G02620.1|Name=NO01G02620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp
ATGTCAACCGTCCATCCTGAGCTGAAAGAGCTGCTTGGTCAGACGCCATC
AGAGCTAACGGACAAGCTAGAAGAGCAGACGCTGGTACTTCTTCAGGCCC
TAATTCGCAACGCCTGTGTCAACCGCGGGGATGGGGAATGCCAGGAGATC
AAAAACATCCAGACACTTGCTGCCTTCCTCGACAAATATGGCTTGCCATA
TCAAATTCATCATCCTTCCAACCGTCCCAACCGTCCCAGTCTCATAGCTG
AGTATCGTGGAGACGGAGGCGAAGGGCCGCGTCTCATGCTTGGGCCTGCG
CATGTCGATGTGGTGCCCGTGAATGAGGCAGCGTGGAAAGTGCCACCGTT
CGAAGGGCGGGTTGTGAATGGGGAACTATGGGGCCGCGGAGCAATTGACA
TGTTAAACACCGTGGCAGCACAGGCTGTTGCATTTGCTTGCTTGGCCACT
TCCCGTGTCCCGCTGCGTGGCACCCTCTTGTTTTGTGCCGTGTCGGATGA
GGAGGCGGGAGGAGCTGATGGTGCAGCATTTTTAATGAAGGACCGCGTGC
TCCGCGGCGTGTTCAAGTCTGACTATTGCATGACTGAGTTCGGCGGCGCC
ACGCTCATCGATCGAAATAGGCGGCCTACTACCACCTACTTCCACGTTAA
CGGCGAGAAAGGAATGACGTCTTTCGAGGTGCTTTGCAAGGGCACCCCCG
GCCATGGCTCCCTCCCTCTAAACGGGGACAATGCATTGGTCAAAGCCGCA
GGAGCAATCAAATGCCTGGCTGATTACTGGGCGCCCACCATAATCACACC
GGAATGGCGCAATGTTATTTCTGCCTCCGATGCTCCGTGGATCGTTCGTG
CTTGCTTGACAAGCACCTGGCTTGCTCGGCCTTTTATCCGCTTTTTGCTG
TGGCTAAAGCACCCGCTCGGCCCGATCGCGCATGCCCTGACTCGCCTTAC
CATTAGCCCAAATCATCTGACGGGCACTCTTAAGAGTAATGTAGTTCCTG
GCTCGGTAGCAATAGAGGTAGACGGACGGCTTATGCCTGGTCAGGATGAA
GCGTATTTAGTCAAGCAGGTGGAGAGGGCGTTGGGCAAGCGGCGCATGGC
TTCAGGGGAGTACGAGATCAATATTAAACATTTTTTTCCCGCTACCACGA
GCACGATCGACACGCCTTTGTGGAGGGCAATGGAGAAGGCGGCGGGTGTA
CTTGTGCCTGGGGCGAAGTTTGTATGTGGCTTGCTGACGGGTGCGACGGA
CTCGAGGTTTTTCCGGCGGGATTGTGGAGCGGTTGCGTATGGGACGTCAT
TGTTTTGCCCAACCTTGACAATGGATAGATTGGTAGAGATGATTCATGGA
AACAACGAGCGGATTCCAATTGAAAGTATTGGTATGTCGGTGCAGTATTT
TGTCTTGACGAGTTTGTATATGCTTGGTGGGAGCGTGGAAGAAAGAGGAG
AAGAAGAGGCCGCGAAAGACTGA
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protein sequence of NO01G02620.1

>NO01G02620.1-protein ID=NO01G02620.1-protein|Name=NO01G02620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=491bp
MSTVHPELKELLGQTPSELTDKLEEQTLVLLQALIRNACVNRGDGECQEI
KNIQTLAAFLDKYGLPYQIHHPSNRPNRPSLIAEYRGDGGEGPRLMLGPA
HVDVVPVNEAAWKVPPFEGRVVNGELWGRGAIDMLNTVAAQAVAFACLAT
SRVPLRGTLLFCAVSDEEAGGADGAAFLMKDRVLRGVFKSDYCMTEFGGA
TLIDRNRRPTTTYFHVNGEKGMTSFEVLCKGTPGHGSLPLNGDNALVKAA
GAIKCLADYWAPTIITPEWRNVISASDAPWIVRACLTSTWLARPFIRFLL
WLKHPLGPIAHALTRLTISPNHLTGTLKSNVVPGSVAIEVDGRLMPGQDE
AYLVKQVERALGKRRMASGEYEINIKHFFPATTSTIDTPLWRAMEKAAGV
LVPGAKFVCGLLTGATDSRFFRRDCGAVAYGTSLFCPTLTMDRLVEMIHG
NNERIPIESIGMSVQYFVLTSLYMLGGSVEERGEEEAAKD*
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mRNA from alignment at chr1:677509..679118+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02620.1 ID=NO01G02620.1|Name=NO01G02620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1610bp|location=Sequence derived from alignment at chr1:677509..679118+ (Nannochloropsis oceanica)
ATGTCAACCGTCCATCCTGAGCTGAAAGAGCTGCTTGGTCAGACGCCATC AGAGCTAACGGACAAGCTAGAAGAGCAGACGCTGGTACTTCTTCAGGCCC TAATTCGCAACGCCTGTGTCAACCGCGGGGATGGGGAATGCCAGGAGATC AAAAACATCCAGACACTTGCTGCCTTCCTCGACAAATATGGCTTGCCATA TCAAATTCATCATCCTTCCAACCGTCCCAACCGTCCCAGTCTCATAGCTG AGTATCGTGGAGACGGAGGCGAAGGGCCGCGTCTCATGCTTGGGCCTGCG CATGTCGATGTGGTGCCCGTGAATGAGGCAGCGTGGAAAGTGCCACCGTT CGAAGGGCGGGTTGTGAATGGGGAACTATGGGGCCGCGGAGCAATTGACA TGTTAAACACCGTGGCAGCACAGGCTGTTGCATTTGCTTGCTTGGCCACT TCCCGTGTCCCGCTGCGTGGCACCCTCTTGTTTTGTGCCGTGTCGGATGA GGAGGCGGGAGGAGCTGATGGTGCAGCATTTTTAATGAAGGGTAAGAAAG AGGGGATTGGAGGAAGGGAGAAGTAGTTTGGGAATGCGCTTGCTGCCGGG CATTGAACTGTTTCCTTCTCCTCCTGGCTCATTAGCCTAAACCCTCACTC CTATCGTCCTACCAAAAAAATAAACTAGACCGCGTGCTCCGCGGCGTGTT CAAGTCTGACTATTGCATGACTGAGTTCGGCGGCGCCACGCTCATCGATC GAAATAGGCGGCCTACTACCACCTACTTCCACGTTAACGGCGAGAAAGGA ATGACGTCTTTCGAGGTGCTTTGCAAGGGCACCCCCGGCCATGGCTCCCT CCCTCTAAACGGGGACAATGCATTGGTCAAAGCCGCAGGAGCAATCAAAT GCCTGGCTGATTACTGGGCGCCCACCATAATCACACCGGAATGGCGCAAT GTTATTTCTGCCTCCGATGCTCCGTGGATCGTTCGTGCTTGCTTGACAAG CACCTGGCTTGCTCGGCCTTTTATCCGCTTTTTGCTGTGGCTAAAGCACC CGCTCGGCCCGATCGCGCATGCCCTGACTCGCCTTACCATTAGCCCAAAT CATCTGACGGGCACTCTTAAGAGTAATGTAGTTCCTGGCTCGGTAGCAAT AGAGGTAGACGGACGGCTTATGCCTGGTCAGGATGAAGCGTATTTAGTCA AGCAGGTGGAGAGGGCGTTGGGCAAGCGGCGCATGGCTTCAGGGGAGTAC GAGATCAATATTAAACATTTTTTTCCCGCTACCACGAGCACGATCGACAC GCCTTTGTGGAGGGCAATGGAGAAGGCGGCGGGTGTACTTGTGCCTGGGG CGAAGTTTGTATGTGGCTTGCTGACGGGTGCGACGGACTCGAGGTTTTTC CGGCGGGATTGTGGAGCGGTTGCGTATGGGACGTCATTGTTTTGCCCAAC CTTGACAATGGATAGATTGGTAGAGATGATTCATGGAAACAACGAGCGGA TTCCAATTGAAAGTATTGGTATGTCGGTGCAGTATTTTGTCTTGACGAGT TTGTATATGCTTGGTGGGAGCGTGGAAGAAAGAGGAGAAGAAGAGGCCGC GAAAGACTGA
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Coding sequence (CDS) from alignment at chr1:677509..679118+

>NO01G02620.1 ID=NO01G02620.1|Name=NO01G02620.1|organism=Nannochloropsis oceanica|type=CDS|length=1473bp|location=Sequence derived from alignment at chr1:677509..679118+ (Nannochloropsis oceanica)
ATGTCAACCGTCCATCCTGAGCTGAAAGAGCTGCTTGGTCAGACGCCATC
AGAGCTAACGGACAAGCTAGAAGAGCAGACGCTGGTACTTCTTCAGGCCC
TAATTCGCAACGCCTGTGTCAACCGCGGGGATGGGGAATGCCAGGAGATC
AAAAACATCCAGACACTTGCTGCCTTCCTCGACAAATATGGCTTGCCATA
TCAAATTCATCATCCTTCCAACCGTCCCAACCGTCCCAGTCTCATAGCTG
AGTATCGTGGAGACGGAGGCGAAGGGCCGCGTCTCATGCTTGGGCCTGCG
CATGTCGATGTGGTGCCCGTGAATGAGGCAGCGTGGAAAGTGCCACCGTT
CGAAGGGCGGGTTGTGAATGGGGAACTATGGGGCCGCGGAGCAATTGACA
TGTTAAACACCGTGGCAGCACAGGCTGTTGCATTTGCTTGCTTGGCCACT
TCCCGTGTCCCGCTGCGTGGCACCCTCTTGTTTTGTGCCGTGTCGGATGA
GGAGGCGGGAGGAGCTGATGGTGCAGCATTTTTAATGAAGGACCGCGTGC
TCCGCGGCGTGTTCAAGTCTGACTATTGCATGACTGAGTTCGGCGGCGCC
ACGCTCATCGATCGAAATAGGCGGCCTACTACCACCTACTTCCACGTTAA
CGGCGAGAAAGGAATGACGTCTTTCGAGGTGCTTTGCAAGGGCACCCCCG
GCCATGGCTCCCTCCCTCTAAACGGGGACAATGCATTGGTCAAAGCCGCA
GGAGCAATCAAATGCCTGGCTGATTACTGGGCGCCCACCATAATCACACC
GGAATGGCGCAATGTTATTTCTGCCTCCGATGCTCCGTGGATCGTTCGTG
CTTGCTTGACAAGCACCTGGCTTGCTCGGCCTTTTATCCGCTTTTTGCTG
TGGCTAAAGCACCCGCTCGGCCCGATCGCGCATGCCCTGACTCGCCTTAC
CATTAGCCCAAATCATCTGACGGGCACTCTTAAGAGTAATGTAGTTCCTG
GCTCGGTAGCAATAGAGGTAGACGGACGGCTTATGCCTGGTCAGGATGAA
GCGTATTTAGTCAAGCAGGTGGAGAGGGCGTTGGGCAAGCGGCGCATGGC
TTCAGGGGAGTACGAGATCAATATTAAACATTTTTTTCCCGCTACCACGA
GCACGATCGACACGCCTTTGTGGAGGGCAATGGAGAAGGCGGCGGGTGTA
CTTGTGCCTGGGGCGAAGTTTGTATGTGGCTTGCTGACGGGTGCGACGGA
CTCGAGGTTTTTCCGGCGGGATTGTGGAGCGGTTGCGTATGGGACGTCAT
TGTTTTGCCCAACCTTGACAATGGATAGATTGGTAGAGATGATTCATGGA
AACAACGAGCGGATTCCAATTGAAAGTATTGGTATGTCGGTGCAGTATTT
TGTCTTGACGAGTTTGTATATGCTTGGTGGGAGCGTGGAAGAAAGAGGAG
AAGAAGAGGCCGCGAAAGACTGA
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Synonyms
Publications