NO01G02610.1, NO01G02610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02610.1
Unique NameNO01G02610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length861
Alignment locationchr1:675910..677151 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:675910..677151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G02610.1 vs.
Match: EWM29168.1 (amidases related to nicotinamidase [Nannochloropsis gaditana])

HSP 1 Score: 372.9 bits (956), Expect = 8.600e-100
Identity = 173/261 (66.28%), Postives = 205/261 (78.54%), Query Frame = 0 
Query:    5 GDSFTPFALLIIDPQADFHQGGSLAVPGADDDAQRIQNFVEGNLDNITNIYVTLDSHQRVHISHPLFWKDANGASPAPFTPILHTDVVAGKWMAADETLKAYAEDYTLQLETSSGKFQHIVWPEHCLIGSPGHCVVPPVLAAIHAWSAHTRKPIRYYWKGTNIRTEMYSVFKAEVPVPGCAETEVNEALVRELVAEPRVMICGQALSHCVNFSTRDLLAAWPEGRMDDLTLLAGMSSPVIGFEGQAVEFLGLLKERGVRVV 266
            G +  PFALLIIDPQ DFH+GGSLA+ GAD+DAQRI++F+E N+D ITNIYVTLDSHQ VHISHPLFWK     +P P+T I   DV+ GKW AADE LK Y E+Y  QLET+ GKFQH +WPEHC+I + GHC+V PVL  IHAW+A TRKPI Y+WKG N  TEMYSVF+AEVPVPG  ETE+N+ LV++LVAEPRV+ICGQALSHCVNFS RDL+ AWP  R+ D+ LL GMSSPV GFE  A  F+  ++E G +VV
Sbjct:   26 GKATAPFALLIIDPQVDFHEGGSLAIAGADEDAQRIKSFIETNIDQITNIYVTLDSHQLVHISHPLFWKGPQKETPPPYTVISKEDVLCGKWSAADENLKHYVENYIKQLETT-GKFQHTIWPEHCVISTRGHCIVGPVLEGIHAWTAKTRKPIHYHWKGINALTEMYSVFQAEVPVPGSPETEMNDDLVKQLVAEPRVLICGQALSHCVNFSVRDLMLAWPRERIGDVGLLLGMSSPVQGFEDDAERFVAFMRESGAQVV 285
The following BLAST results are available for this feature:
BLAST of NO01G02610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29168.18.600e-10066.28amidases related to nicotinamidase [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02610NO01G02610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02610.1NO01G02610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02610.1.cds1NO01G02610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02610.1.cds2NO01G02610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02610.1.cds3NO01G02610.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02610.1.cds4NO01G02610.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02610.1 ID=NO01G02610.1|Name=NO01G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=861bp
AAAAACAGCGTCAGAATTCCAGAACTATCTATCCCCTTGCAGCAGCCCAG
CATGGAGGACGGCGGCGACAGCTTCACTCCCTTCGCATTGCTTATCATTG
ATCCACAGGCCGATTTCCACCAGGGTGGCTCTTTGGCAGTGCCAGGTGCC
GATGATGACGCGCAACGCATTCAGAATTTTGTGGAGGGGAACTTAGATAA
CATCACCAATATCTACGTGACGTTGGACTCCCATCAGCGGGTCCACATCA
GTCACCCTTTATTCTGGAAAGATGCAAATGGGGCATCTCCGGCGCCTTTC
ACGCCTATCTTGCACACCGACGTCGTGGCTGGGAAGTGGATGGCTGCAGA
CGAGACCCTGAAGGCGTATGCGGAAGATTACACCCTGCAATTGGAGACGT
CTTCGGGCAAGTTTCAGCACATTGTTTGGCCCGAGCATTGCTTGATTGGC
AGTCCGGGTCATTGTGTGGTACCTCCTGTCTTGGCTGCAATTCACGCTTG
GTCCGCTCATACCCGCAAGCCCATTCGTTACTACTGGAAAGGCACCAACA
TCCGCACCGAAATGTACAGCGTTTTCAAAGCCGAAGTTCCCGTCCCTGGC
TGTGCGGAAACAGAAGTTAACGAAGCGTTGGTGCGGGAGTTAGTCGCGGA
GCCTCGGGTTATGATTTGTGGGCAAGCCTTGTCTCACTGTGTTAATTTTT
CGACGCGAGACCTTCTTGCGGCCTGGCCCGAGGGGAGGATGGATGACTTA
ACGTTGTTGGCGGGGATGAGCTCTCCGGTGATAGGTTTTGAGGGGCAGGC
AGTAGAGTTCTTAGGCCTGTTGAAGGAAAGGGGGGTTCGGGTCGTGGCGG
AGGTGAAGTAG
back to top

protein sequence of NO01G02610.1

>NO01G02610.1-protein ID=NO01G02610.1-protein|Name=NO01G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MEDGGDSFTPFALLIIDPQADFHQGGSLAVPGADDDAQRIQNFVEGNLDN
ITNIYVTLDSHQRVHISHPLFWKDANGASPAPFTPILHTDVVAGKWMAAD
ETLKAYAEDYTLQLETSSGKFQHIVWPEHCLIGSPGHCVVPPVLAAIHAW
SAHTRKPIRYYWKGTNIRTEMYSVFKAEVPVPGCAETEVNEALVRELVAE
PRVMICGQALSHCVNFSTRDLLAAWPEGRMDDLTLLAGMSSPVIGFEGQA
VEFLGLLKERGVRVVAEVK*
back to top

mRNA from alignment at chr1:675910..677151-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02610.1 ID=NO01G02610.1|Name=NO01G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1242bp|location=Sequence derived from alignment at chr1:675910..677151- (Nannochloropsis oceanica)
AAAAACAGCGTCAGAATTCCAGAACTATCTATCCCCTTGCAGCAGCCCAG
CATGGAGGACGGCGGCGACAGCTTCACTCCCTTCGCATTGCTTATCATTG
ATCCACAGGTGTGTTATCGGGCATGATAAGTCACCACCACAACCTTCCCA
TCTCCTCGCCTTACTAAAAAAGCAGCTTTCCTCCCTTCGTTTTCCAGGCC
GATTTCCACCAGGGTGGCTCTTTGGCAGTGCCAGGTGCCGATGATGACGC
GCAACGCATTCAGAATTTTGTGGAGGGGAACTTAGATAACATCACCAATA
TCTACGTGACGTTGGACTCCCATCAGGTGAGCAGATGGGCTCGGGTCGGA
AGTGGGAGACGGAGCTCCGAGCTCTGATGGATTTGATGAGTGCTGATCTA
GCCGTCCTTCAACATCGCAGCGGGTCCACATCAGTCACCCTTTATTCTGG
AAAGATGCAAATGGGGCATCTCCGGCGCCTTTCACGCCTATCTTGCACAC
CGACGTCGTGGCTGGGAAGTGGATGGCTGCAGACGAGACCCTGAAGGCGT
ATGCGGAAGATTACACCCTGCAATTGGAGACGTCTTCGGGCAAGTTTCAG
CACATTGTTTGGCCCGAGCATTGCTTGATTGGCAGTCCGGGTCATTGTGT
GGTACCTCCTGTCTTGGCTGGTACGTGCGTGCATGGCCGTGTTACAAGGG
TCATAAAAGCGTTGAATGATGCAAACAATGGTTGGCGCGCAGAACATCTC
CCATTTGAGACCTAACACGCACTTTTCCGCGCCAACCTGTCTCCTACGGC
TTGCTATTCTTAGCTGTATATAATTCTACGGTCTCTTGCTTACCTTTTCC
TTTCTTACCCCCCACCAGCAATTCACGCTTGGTCCGCTCATACCCGCAAG
CCCATTCGTTACTACTGGAAAGGCACCAACATCCGCACCGAAATGTACAG
CGTTTTCAAAGCCGAAGTTCCCGTCCCTGGCTGTGCGGAAACAGAAGTTA
ACGAAGCGTTGGTGCGGGAGTTAGTCGCGGAGCCTCGGGTTATGATTTGT
GGGCAAGCCTTGTCTCACTGTGTTAATTTTTCGACGCGAGACCTTCTTGC
GGCCTGGCCCGAGGGGAGGATGGATGACTTAACGTTGTTGGCGGGGATGA
GCTCTCCGGTGATAGGTTTTGAGGGGCAGGCAGTAGAGTTCTTAGGCCTG
TTGAAGGAAAGGGGGGTTCGGGTCGTGGCGGAGGTGAAGTAG
back to top

Coding sequence (CDS) from alignment at chr1:675910..677151-

>NO01G02610.1 ID=NO01G02610.1|Name=NO01G02610.1|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at chr1:675910..677151- (Nannochloropsis oceanica)
ATGGAGGACGGCGGCGACAGCTTCACTCCCTTCGCATTGCTTATCATTGA
TCCACAGGCCGATTTCCACCAGGGTGGCTCTTTGGCAGTGCCAGGTGCCG
ATGATGACGCGCAACGCATTCAGAATTTTGTGGAGGGGAACTTAGATAAC
ATCACCAATATCTACGTGACGTTGGACTCCCATCAGCGGGTCCACATCAG
TCACCCTTTATTCTGGAAAGATGCAAATGGGGCATCTCCGGCGCCTTTCA
CGCCTATCTTGCACACCGACGTCGTGGCTGGGAAGTGGATGGCTGCAGAC
GAGACCCTGAAGGCGTATGCGGAAGATTACACCCTGCAATTGGAGACGTC
TTCGGGCAAGTTTCAGCACATTGTTTGGCCCGAGCATTGCTTGATTGGCA
GTCCGGGTCATTGTGTGGTACCTCCTGTCTTGGCTGCAATTCACGCTTGG
TCCGCTCATACCCGCAAGCCCATTCGTTACTACTGGAAAGGCACCAACAT
CCGCACCGAAATGTACAGCGTTTTCAAAGCCGAAGTTCCCGTCCCTGGCT
GTGCGGAAACAGAAGTTAACGAAGCGTTGGTGCGGGAGTTAGTCGCGGAG
CCTCGGGTTATGATTTGTGGGCAAGCCTTGTCTCACTGTGTTAATTTTTC
GACGCGAGACCTTCTTGCGGCCTGGCCCGAGGGGAGGATGGATGACTTAA
CGTTGTTGGCGGGGATGAGCTCTCCGGTGATAGGTTTTGAGGGGCAGGCA
GTAGAGTTCTTAGGCCTGTTGAAGGAAAGGGGGGTTCGGGTCGTGGCGGA
GGTGAAGTAG
back to top
Synonyms
Publications