NO01G02590.1, NO01G02590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02590.1
Unique NameNO01G02590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length735
Alignment locationchr1:673473..674286 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:673473..674286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02590.1 vs.
Match: EWM29124.1 (sepiapterin reductase [Nannochloropsis gaditana])

HSP 1 Score: 245.7 bits (626), Expect = 1.400e-61
Identity = 123/197 (62.44%), Postives = 150/197 (76.14%), Query Frame = 0 
Query:   55 YTKAYLFNNAGLVGPIAYAKDLHKDLAALRQSIDLNVTSFVYLTSLFLHHFG--APPSQKLPFASSAVVVNISSLAAIQPFHTWSIYCGGKAARDMFTQVVGQEQQQEGEGGGKR-----VTTTFKTLNYAPGPLNTDMQTELRESKSIHPPTRMWSMEAFKEGKLVRPEDSASKCIHFLTEDTWESGAHVDYYDDV 245
            Y   YLFNNAG VGPIAYAKDL  DL ALRQS+DLN+TS + +TSLFL  F   + PS K+P   +  ++NISS+AAIQPFH+W +YC GKAARDMF QVV QE Q EG   G+      ++   KTLNYAPGPL+TDMQ ELRES+SIHPPTR WS +AF+EG LVRPE+SASKC+  LT++ ++SG H+DYYDD+
Sbjct:  110 YGNVYLFNNAGSVGPIAYAKDLCTDLPALRQSLDLNLTSSILITSLFLRRFCTLSSPSNKVP---ALFIINISSMAAIQPFHSWGVYCAGKAARDMFLQVVAQEHQGEGSARGEGSMAGGMSVHLKTLNYAPGPLDTDMQIELRESESIHPPTREWSEKAFREGWLVRPEESASKCLRILTKNDFKSGVHIDYYDDM 303
The following BLAST results are available for this feature:
BLAST of NO01G02590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29124.11.400e-6162.44sepiapterin reductase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02590NO01G02590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02590.1NO01G02590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02590.1.cds1NO01G02590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02590.1.cds2NO01G02590.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02590.1 ID=NO01G02590.1|Name=NO01G02590.1|organism=Nannochloropsis oceanica|type=mRNA|length=735bp
ATGCTTAGCACTCGAAGCAGCCAGGACCTGGGGGCCGGCACTCGACATGC
ACCTGATCGCACGCAACAAGGAAGGCCTAGAGGCCACCAAGCAGGCTATC
GAGGGAATAATGAGATTTTTGCCGCCGTGCGGCAGCCGGAAGGGTCTCCT
TTCTCGCTACCCTACACCAAGGCGTATCTGTTCAACAACGCAGGTTTGGT
GGGGCCGATTGCATATGCCAAGGATCTCCATAAAGATCTCGCGGCGTTGC
GCCAGTCTATAGACTTGAACGTGACTTCCTTTGTCTACTTGACCTCGCTT
TTCCTACACCACTTTGGTGCACCACCGAGTCAAAAATTACCATTCGCCTC
GTCTGCTGTCGTTGTGAATATATCTTCACTCGCAGCCATCCAACCATTCC
ATACCTGGAGCATATATTGCGGAGGAAAGGCGGCGCGTGACATGTTCACT
CAAGTCGTGGGGCAGGAGCAACAACAGGAGGGGGAGGGGGGTGGCAAGCG
AGTAACCACCACTTTTAAAACCCTTAACTATGCGCCAGGCCCACTGAACA
CAGATATGCAGACAGAGCTCCGAGAGAGTAAATCCATTCATCCACCGACG
CGGATGTGGTCGATGGAGGCATTTAAAGAAGGCAAGCTGGTGCGGCCGGA
AGACTCTGCGTCCAAGTGCATACACTTTCTCACAGAGGACACCTGGGAAA
GTGGGGCTCATGTTGATTACTATGACGATGTATAG
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protein sequence of NO01G02590.1

>NO01G02590.1-protein ID=NO01G02590.1-protein|Name=NO01G02590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MLSTRSSQDLGAGTRHAPDRTQQGRPRGHQAGYRGNNEIFAAVRQPEGSP
FSLPYTKAYLFNNAGLVGPIAYAKDLHKDLAALRQSIDLNVTSFVYLTSL
FLHHFGAPPSQKLPFASSAVVVNISSLAAIQPFHTWSIYCGGKAARDMFT
QVVGQEQQQEGEGGGKRVTTTFKTLNYAPGPLNTDMQTELRESKSIHPPT
RMWSMEAFKEGKLVRPEDSASKCIHFLTEDTWESGAHVDYYDDV*
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mRNA from alignment at chr1:673473..674286-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02590.1 ID=NO01G02590.1|Name=NO01G02590.1|organism=Nannochloropsis oceanica|type=mRNA|length=814bp|location=Sequence derived from alignment at chr1:673473..674286- (Nannochloropsis oceanica)
ATGCTTAGCACTCGAAGCAGCCAGGACCTGGGGGCCGGCACTCGACATGC
ACCTGATCGCACGCAACAAGGAAGGCCTAGAGGCCACCAAGCAGGCTATC
GAGGGAATAATGAGAGTAAGTGATGGCCCGCGTATATGGACATGGCCAAT
AGACCTGGGAGACCTAGACTCATTGCCGCTCCAACTTGCGCAAGTTTTTG
CCGCCGTGCGGCAGCCGGAAGGGTCTCCTTTCTCGCTACCCTACACCAAG
GCGTATCTGTTCAACAACGCAGGTTTGGTGGGGCCGATTGCATATGCCAA
GGATCTCCATAAAGATCTCGCGGCGTTGCGCCAGTCTATAGACTTGAACG
TGACTTCCTTTGTCTACTTGACCTCGCTTTTCCTACACCACTTTGGTGCA
CCACCGAGTCAAAAATTACCATTCGCCTCGTCTGCTGTCGTTGTGAATAT
ATCTTCACTCGCAGCCATCCAACCATTCCATACCTGGAGCATATATTGCG
GAGGAAAGGCGGCGCGTGACATGTTCACTCAAGTCGTGGGGCAGGAGCAA
CAACAGGAGGGGGAGGGGGGTGGCAAGCGAGTAACCACCACTTTTAAAAC
CCTTAACTATGCGCCAGGCCCACTGAACACAGATATGCAGACAGAGCTCC
GAGAGAGTAAATCCATTCATCCACCGACGCGGATGTGGTCGATGGAGGCA
TTTAAAGAAGGCAAGCTGGTGCGGCCGGAAGACTCTGCGTCCAAGTGCAT
ACACTTTCTCACAGAGGACACCTGGGAAAGTGGGGCTCATGTTGATTACT
ATGACGATGTATAG
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Coding sequence (CDS) from alignment at chr1:673473..674286-

>NO01G02590.1 ID=NO01G02590.1|Name=NO01G02590.1|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at chr1:673473..674286- (Nannochloropsis oceanica)
ATGCTTAGCACTCGAAGCAGCCAGGACCTGGGGGCCGGCACTCGACATGC
ACCTGATCGCACGCAACAAGGAAGGCCTAGAGGCCACCAAGCAGGCTATC
GAGGGAATAATGAGATTTTTGCCGCCGTGCGGCAGCCGGAAGGGTCTCCT
TTCTCGCTACCCTACACCAAGGCGTATCTGTTCAACAACGCAGGTTTGGT
GGGGCCGATTGCATATGCCAAGGATCTCCATAAAGATCTCGCGGCGTTGC
GCCAGTCTATAGACTTGAACGTGACTTCCTTTGTCTACTTGACCTCGCTT
TTCCTACACCACTTTGGTGCACCACCGAGTCAAAAATTACCATTCGCCTC
GTCTGCTGTCGTTGTGAATATATCTTCACTCGCAGCCATCCAACCATTCC
ATACCTGGAGCATATATTGCGGAGGAAAGGCGGCGCGTGACATGTTCACT
CAAGTCGTGGGGCAGGAGCAACAACAGGAGGGGGAGGGGGGTGGCAAGCG
AGTAACCACCACTTTTAAAACCCTTAACTATGCGCCAGGCCCACTGAACA
CAGATATGCAGACAGAGCTCCGAGAGAGTAAATCCATTCATCCACCGACG
CGGATGTGGTCGATGGAGGCATTTAAAGAAGGCAAGCTGGTGCGGCCGGA
AGACTCTGCGTCCAAGTGCATACACTTTCTCACAGAGGACACCTGGGAAA
GTGGGGCTCATGTTGATTACTATGACGATGTATAG
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Synonyms
Publications