NO01G02580.1, NO01G02580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02580.1
Unique NameNO01G02580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1875
Alignment locationchr1:671081..673186 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:671081..673186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02580.1 vs.
Match: EWM29176.1 (hypothetical protein Naga_100007g62 [Nannochloropsis gaditana])

HSP 1 Score: 327.4 bits (838), Expect = 9.600e-86
Identity = 187/369 (50.68%), Postives = 231/369 (62.60%), Query Frame = 0 
Query:   96 SRRQRQQQSTGLTRPIKMSGRQSLQQKGAKTEGKYTMGKES------DALFGEAEVNTSRCVGILFLAHDGVANPSLWEKWRESDPAFASRIRFFVFRNEAISHTSTFANQNDLLLRMRTKWCCSSIVRATVKSLDAILTKDADVEIIYIVSGFDIPIQPPSAFFTTRAVVTEGVPKSVVPFQTVLAFTPGEDAPFKVAKGWGKKNEDVRQSVVCHVQWCGLARDHAQRIVEFPELDRFLDIGNKMSKACCPDEWVLGTILSLQLRGEEGRKMESQQGKKDENKDQEKKNSEEEGEGKEEPYPEEGDRKPAVTAATATVTAIVPPPATLTATVPPGVTDWPVTDQYRAKRQAQSPLVWSDLDTTTQKVL 459
            S   ++ Q    T P++    +S      K+   + +G+        +A            VGILFLAHDGV NP LWEKWR SD  FASRIRFFVFRN  ISH S F  + DL LR+RTKWC SSIV AT+KSL A+L  D  V +IYIVSG+DIPIQPPSA FTTR+V+TEGV K+VVPF++V+AFTPGED   K A GWGK+NE +RQS V HVQWCGL R HA+ IV +P+L +   +GNK+S ACCPDEWVLGT L LQLR +      ++  K   N   + K      EG     P E D    V   TA+ T+I  P   L +     V DWP+TDQYR+ RQAQSPL+W D++ T+ K+L
Sbjct:   26 SSHVKEGQRKASTSPVRPDASRSENCVDGKSHANFDIGRSGTHVEKPNASIDSVPDKDQHSVGILFLAHDGVTNPLLWEKWRASDKVFASRIRFFVFRNTKISHPSFFTTKYDLKLRLRTKWCSSSIVHATIKSLQAVLEGDTSVGMIYIVSGYDIPIQPPSALFTTRSVITEGVFKNVVPFRSVIAFTPGEDMDLKEASGWGKRNEKLRQSAVSHVQWCGLTRGHARLIVAYPDLKQLFKLGNKISSACCPDEWVLGTALLLQLRCQ---ATPTKANKCGTNGHDDGKEYWRGAEGVRHS-PREAD----VPTTTASDTSIPNPSGCLESF---DVIDWPITDQYRSGRQAQSPLLWEDMEATSHKLL 383
The following BLAST results are available for this feature:
BLAST of NO01G02580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29176.19.600e-8650.68hypothetical protein Naga_100007g62 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02580NO01G02580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02580.1NO01G02580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02580.1.cds1NO01G02580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02580.1.cds2NO01G02580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02580.1.cds3NO01G02580.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02580.1 ID=NO01G02580.1|Name=NO01G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1875bp
ATGTTTTATTTTGCCATTCAGGTGGCCACGACGCACGCGCAAGCGGCAAG
CACATTGGAAGGAGGCCGACCTCACAGTAGCAACCTCACAACCACGGCCA
TTCGCCCTTTCCCAATCACAGGCGGCTGGCGGGCCTGGCGCCGCATCAAC
AGCATGAGCAGCGCCAGCCTTGCCGCTGCTGTGGACGTGGCCATCCCCAG
TACCAATTATTATGCCAGCAGCACCAGCCCCACCTCCCCTCCTCGCATGA
AGACGAACGACCAGCAAGCTCTCTCTACGACGCCCAGTCGCCGCCAACGT
CAACAGCAGAGTACTGGTCTCACAAGGCCGATCAAGATGAGCGGCCGCCA
ATCGCTCCAGCAGAAGGGTGCGAAAACGGAAGGAAAATACACAATGGGCA
AAGAGTCAGACGCCCTGTTCGGAGAGGCAGAGGTGAACACTTCCCGGTGC
GTGGGCATCCTCTTTCTGGCGCACGATGGGGTTGCCAATCCCTCACTCTG
GGAGAAGTGGCGAGAAAGCGATCCGGCGTTCGCATCCCGCATCAGATTTT
TCGTTTTCCGGAACGAAGCCATCAGCCACACCAGCACCTTTGCCAACCAA
AACGACTTACTTTTGCGCATGCGGACCAAGTGGTGCTGTTCCAGTATAGT
CCGCGCGACTGTCAAGTCCTTGGACGCCATATTGACAAAGGACGCAGACG
TTGAAATTATTTACATCGTTTCGGGTTTTGACATTCCGATTCAACCACCT
TCGGCTTTCTTTACGACTCGGGCTGTGGTTACGGAGGGTGTGCCGAAAAG
TGTGGTGCCGTTTCAGACCGTTTTGGCTTTTACGCCTGGGGAGGACGCAC
CGTTCAAAGTGGCCAAAGGTTGGGGCAAGAAGAACGAGGACGTGCGGCAA
AGCGTCGTGTGCCACGTGCAGTGGTGCGGGCTCGCGCGAGATCACGCCCA
GCGTATTGTCGAATTTCCGGAATTGGATCGATTTTTGGACATAGGGAATA
AAATGTCGAAAGCATGCTGTCCGGATGAGTGGGTGCTGGGCACCATCCTC
TCTTTGCAACTGCGAGGGGAGGAGGGGCGAAAGATGGAAAGTCAGCAAGG
CAAGAAGGATGAGAACAAGGACCAGGAGAAGAAGAATTCGGAAGAAGAGG
GGGAGGGGAAGGAGGAACCTTATCCGGAGGAAGGTGACCGCAAGCCTGCA
GTTACAGCTGCTACTGCAACTGTTACTGCAATCGTCCCACCACCTGCCAC
TCTTACTGCAACCGTCCCACCCGGTGTAACTGACTGGCCTGTCACGGACC
AGTACCGAGCCAAGCGGCAGGCGCAGTCCCCCCTTGTCTGGAGCGATCTC
GACACTACCACACAGAAGGTTTTGTGGGCACCCCCGCAAACATATCGTTC
ATTTACTCTCGAGAAAGTGGTGGAGCAGGTGTCGCGAAACGAGGGCAATC
TTTTCTTTCGCAAGGTAAGCCCGTTGACGGAAAAGGAGATCGACAGATTG
ATCCCTTATCAGGAGGCCAAGGAAGTCCCCGATGCTGCCGCCACCAACGC
AGGTGCAACACCAGCGGTGGTGGTAGATAAGAGGGGAATGGCTTCCACGG
TGGGACAGGGCTCGAGCTGTACCTCAGCTACCTCGGATTTAGAGGGCGTC
GACGACGAAGCCCGCAGCAGCATGAACAGCAGCCGTGTGCCTACCACCCC
TCAGACGCATCTAAGGCTTCCCGAGCAGGAGGAGGAGGAAGAGGAGGGGA
AGAAGGTAGTGACTTTTCGTGCTGGGGCACTGCCAACATATGGTCATCGT
GTCATGGATAGACGAAGGCGGCGGGGATGCCCGGATGGAGGGGGCAGGGG
GGTCTGTTGCGAGGAGTGCGGGTGA
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protein sequence of NO01G02580.1

>NO01G02580.1-protein ID=NO01G02580.1-protein|Name=NO01G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=625bp
MFYFAIQVATTHAQAASTLEGGRPHSSNLTTTAIRPFPITGGWRAWRRIN
SMSSASLAAAVDVAIPSTNYYASSTSPTSPPRMKTNDQQALSTTPSRRQR
QQQSTGLTRPIKMSGRQSLQQKGAKTEGKYTMGKESDALFGEAEVNTSRC
VGILFLAHDGVANPSLWEKWRESDPAFASRIRFFVFRNEAISHTSTFANQ
NDLLLRMRTKWCCSSIVRATVKSLDAILTKDADVEIIYIVSGFDIPIQPP
SAFFTTRAVVTEGVPKSVVPFQTVLAFTPGEDAPFKVAKGWGKKNEDVRQ
SVVCHVQWCGLARDHAQRIVEFPELDRFLDIGNKMSKACCPDEWVLGTIL
SLQLRGEEGRKMESQQGKKDENKDQEKKNSEEEGEGKEEPYPEEGDRKPA
VTAATATVTAIVPPPATLTATVPPGVTDWPVTDQYRAKRQAQSPLVWSDL
DTTTQKVLWAPPQTYRSFTLEKVVEQVSRNEGNLFFRKVSPLTEKEIDRL
IPYQEAKEVPDAAATNAGATPAVVVDKRGMASTVGQGSSCTSATSDLEGV
DDEARSSMNSSRVPTTPQTHLRLPEQEEEEEEGKKVVTFRAGALPTYGHR
VMDRRRRRGCPDGGGRGVCCEECG*
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mRNA from alignment at chr1:671081..673186+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02580.1 ID=NO01G02580.1|Name=NO01G02580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2106bp|location=Sequence derived from alignment at chr1:671081..673186+ (Nannochloropsis oceanica)
ATGTTTTATTTTGCCATTCAGGTGGCCACGACGCACGCGCAAGCGGCAAG
CACATTGGAAGGAGGCCGACCTCACAGTAGCAACCTCACAACCACGGCCA
TTCGCCCTTTCCCAATCACAGGCGGCTGGCGGGCCTGGCGCCGCATCAAC
AGCATGAGCAGCGCCAGCCTTGCCGCTGCTGTGGACGTGGCCATCCCCAG
TACCAATTATTATGCCAGCAGCACCAGCCCCACCTCCCCTCCTCGCATGA
AGACGAACGACCAGCAAGCTCTCTCTACGACGCCCAGTCGCCGCCAACGT
CAACAGCAGAGTACTGGTCTCACAAGGCCGATCAAGATGAGCGGCCGCCA
ATCGCTCCAGCAGAAGGGTGCGAAAACGGAAGGAAAATACACAATGGGCA
AAGAGTCAGACGCCCTGTTCGGAGAGGCAGAGGTGAACACTTCCCGGTGC
GTGGGCATCCTCTTTCTGGCGCACGATGGGGTTGCCAATCCCTCACTCTG
GGAGAAGTGGCGAGAAAGCGATCCGGTGAGTAGAGCGCCGGGGAAGGAGT
GGGAGGGGAGGCTGGCTTTTCAGGCCCTCTCACATGCTGCACGGTGCAAG
CCATCTCACCATCTCACCTGCGTCCCATCTCTTCCCATTATTTTCAGGCG
TTCGCATCCCGCATCAGATTTTTCGTTTTCCGGAACGAAGCCATCAGCCA
CACCAGCACCTTTGCCAACCAAAACGACTTACTTTTGCGCATGCGGACCA
AGTGGTGCTGTTCCAGTATAGTCCGCGCGACTGTCAAGTCCTTGGACGCC
ATATTGACAAAGGACGCAGACGTTGAAATTATTTACATCGTTTCGGGTTT
TGACATTCCGATTCAACCACCTTCGGCTTTCTTTACGACTCGGGCTGTGG
TTACGGAGGGTGTGCCGAAAAGTGTGGTGCCGTTTCAGACCGTTTTGGCT
TTTACGCCTGGGGAGGACGCACCGTTCAAAGGTAGGGGAGAGAGGAAGGA
GAGAGGGGGGTAGGAGTGATGTTGCATAGGTTGCAGGTTAATATTCCTTG
GTAGCATCTTAATCATTTTTATTCCGCGCAATGGAGATAGTGGCCAAAGG
TTGGGGCAAGAAGAACGAGGACGTGCGGCAAAGCGTCGTGTGCCACGTGC
AGTGGTGCGGGCTCGCGCGAGATCACGCCCAGCGTATTGTCGAATTTCCG
GAATTGGATCGATTTTTGGACATAGGGAATAAAATGTCGAAAGCATGCTG
TCCGGATGAGTGGGTGCTGGGCACCATCCTCTCTTTGCAACTGCGAGGGG
AGGAGGGGCGAAAGATGGAAAGTCAGCAAGGCAAGAAGGATGAGAACAAG
GACCAGGAGAAGAAGAATTCGGAAGAAGAGGGGGAGGGGAAGGAGGAACC
TTATCCGGAGGAAGGTGACCGCAAGCCTGCAGTTACAGCTGCTACTGCAA
CTGTTACTGCAATCGTCCCACCACCTGCCACTCTTACTGCAACCGTCCCA
CCCGGTGTAACTGACTGGCCTGTCACGGACCAGTACCGAGCCAAGCGGCA
GGCGCAGTCCCCCCTTGTCTGGAGCGATCTCGACACTACCACACAGAAGG
TTTTGTGGGCACCCCCGCAAACATATCGTTCATTTACTCTCGAGAAAGTG
GTGGAGCAGGTGTCGCGAAACGAGGGCAATCTTTTCTTTCGCAAGGTAAG
CCCGTTGACGGAAAAGGAGATCGACAGATTGATCCCTTATCAGGAGGCCA
AGGAAGTCCCCGATGCTGCCGCCACCAACGCAGGTGCAACACCAGCGGTG
GTGGTAGATAAGAGGGGAATGGCTTCCACGGTGGGACAGGGCTCGAGCTG
TACCTCAGCTACCTCGGATTTAGAGGGCGTCGACGACGAAGCCCGCAGCA
GCATGAACAGCAGCCGTGTGCCTACCACCCCTCAGACGCATCTAAGGCTT
CCCGAGCAGGAGGAGGAGGAAGAGGAGGGGAAGAAGGTAGTGACTTTTCG
TGCTGGGGCACTGCCAACATATGGTCATCGTGTCATGGATAGACGAAGGC
GGCGGGGATGCCCGGATGGAGGGGGCAGGGGGGTCTGTTGCGAGGAGTGC
GGGTGA
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Coding sequence (CDS) from alignment at chr1:671081..673186+

>NO01G02580.1 ID=NO01G02580.1|Name=NO01G02580.1|organism=Nannochloropsis oceanica|type=CDS|length=1875bp|location=Sequence derived from alignment at chr1:671081..673186+ (Nannochloropsis oceanica)
ATGTTTTATTTTGCCATTCAGGTGGCCACGACGCACGCGCAAGCGGCAAG
CACATTGGAAGGAGGCCGACCTCACAGTAGCAACCTCACAACCACGGCCA
TTCGCCCTTTCCCAATCACAGGCGGCTGGCGGGCCTGGCGCCGCATCAAC
AGCATGAGCAGCGCCAGCCTTGCCGCTGCTGTGGACGTGGCCATCCCCAG
TACCAATTATTATGCCAGCAGCACCAGCCCCACCTCCCCTCCTCGCATGA
AGACGAACGACCAGCAAGCTCTCTCTACGACGCCCAGTCGCCGCCAACGT
CAACAGCAGAGTACTGGTCTCACAAGGCCGATCAAGATGAGCGGCCGCCA
ATCGCTCCAGCAGAAGGGTGCGAAAACGGAAGGAAAATACACAATGGGCA
AAGAGTCAGACGCCCTGTTCGGAGAGGCAGAGGTGAACACTTCCCGGTGC
GTGGGCATCCTCTTTCTGGCGCACGATGGGGTTGCCAATCCCTCACTCTG
GGAGAAGTGGCGAGAAAGCGATCCGGCGTTCGCATCCCGCATCAGATTTT
TCGTTTTCCGGAACGAAGCCATCAGCCACACCAGCACCTTTGCCAACCAA
AACGACTTACTTTTGCGCATGCGGACCAAGTGGTGCTGTTCCAGTATAGT
CCGCGCGACTGTCAAGTCCTTGGACGCCATATTGACAAAGGACGCAGACG
TTGAAATTATTTACATCGTTTCGGGTTTTGACATTCCGATTCAACCACCT
TCGGCTTTCTTTACGACTCGGGCTGTGGTTACGGAGGGTGTGCCGAAAAG
TGTGGTGCCGTTTCAGACCGTTTTGGCTTTTACGCCTGGGGAGGACGCAC
CGTTCAAAGTGGCCAAAGGTTGGGGCAAGAAGAACGAGGACGTGCGGCAA
AGCGTCGTGTGCCACGTGCAGTGGTGCGGGCTCGCGCGAGATCACGCCCA
GCGTATTGTCGAATTTCCGGAATTGGATCGATTTTTGGACATAGGGAATA
AAATGTCGAAAGCATGCTGTCCGGATGAGTGGGTGCTGGGCACCATCCTC
TCTTTGCAACTGCGAGGGGAGGAGGGGCGAAAGATGGAAAGTCAGCAAGG
CAAGAAGGATGAGAACAAGGACCAGGAGAAGAAGAATTCGGAAGAAGAGG
GGGAGGGGAAGGAGGAACCTTATCCGGAGGAAGGTGACCGCAAGCCTGCA
GTTACAGCTGCTACTGCAACTGTTACTGCAATCGTCCCACCACCTGCCAC
TCTTACTGCAACCGTCCCACCCGGTGTAACTGACTGGCCTGTCACGGACC
AGTACCGAGCCAAGCGGCAGGCGCAGTCCCCCCTTGTCTGGAGCGATCTC
GACACTACCACACAGAAGGTTTTGTGGGCACCCCCGCAAACATATCGTTC
ATTTACTCTCGAGAAAGTGGTGGAGCAGGTGTCGCGAAACGAGGGCAATC
TTTTCTTTCGCAAGGTAAGCCCGTTGACGGAAAAGGAGATCGACAGATTG
ATCCCTTATCAGGAGGCCAAGGAAGTCCCCGATGCTGCCGCCACCAACGC
AGGTGCAACACCAGCGGTGGTGGTAGATAAGAGGGGAATGGCTTCCACGG
TGGGACAGGGCTCGAGCTGTACCTCAGCTACCTCGGATTTAGAGGGCGTC
GACGACGAAGCCCGCAGCAGCATGAACAGCAGCCGTGTGCCTACCACCCC
TCAGACGCATCTAAGGCTTCCCGAGCAGGAGGAGGAGGAAGAGGAGGGGA
AGAAGGTAGTGACTTTTCGTGCTGGGGCACTGCCAACATATGGTCATCGT
GTCATGGATAGACGAAGGCGGCGGGGATGCCCGGATGGAGGGGGCAGGGG
GGTCTGTTGCGAGGAGTGCGGGTGA
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Synonyms
Publications