NO01G02570.1, NO01G02570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02570.1
Unique NameNO01G02570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1257
Alignment locationchr1:666758..668269 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:666758..668269 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02570.1 vs.
Match: OQS03096.1 (adenylate kinase, partial [Thraustotheca clavata])

HSP 1 Score: 65.1 bits (157), Expect = 6.000e-7
Identity = 51/175 (29.14%), Postives = 80/175 (45.71%), Query Frame = 0 
Query:  217 LSSAEHEAQAPKARHSFAEMAEHRAALSRLVPLLINGITVIKHGRRGSPKLRLIFCNEDFSRIFWASDRINSHKRSNLSSLSISNVTEVREGTAPDPHHPGLFGTVTLRRRRASSLAVPAIVSCSGSNNSSTGELQPIPRAFSLIAAARSLDLEALTADDYTLLLEGFRSAVKLN 392
            + S + + Q P   +++         + R   +L++G  VIKHGRRG+P  R +F + +F R+FW        K    +S+++S+V EV +G            T   +R                S +SS G      R FSLIA  R+LD+EA + +   LL+ GF    +LN
Sbjct:  279 IKSIDLDFQTPLEDNNYKADTAKLVEMERFKTMLVSGFDVIKHGRRGAPHTRTLFADVEFKRLFWQKPDKKELKPKLDTSIALSDVIEVVQG----------MKTEVFKR----------------SGDSSKG-----GRYFSLIADDRTLDIEASSDEICALLVMGFTELTQLN 422
The following BLAST results are available for this feature:
BLAST of NO01G02570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OQS03096.16.000e-729.14adenylate kinase, partial [Thraustotheca clavata][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02570NO01G02570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02570.1NO01G02570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02570.1.cds1NO01G02570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02570.1.cds2NO01G02570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02570.1.cds3NO01G02570.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02570.1 ID=NO01G02570.1|Name=NO01G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1257bp
ATGCTACAGACAAGAAACAAAGGTATAGAGCTGATAAGGACCAGCGAGTG
CGGCGTCCCCGACCGACATGCCAGCAGCAAGCTAATGCCAAGAGATATCG
CGCGCCAGTCTGAGGGAGAAGACTGCATTAGCCTGGGCATTGTAGGCAAG
GAAGTGGTGGCTATCCCGGTCAGGGGCAACAGTTGCAGAAGGCTGATCAG
CTCCGGTGGTCCTTGTTCCGTTTCATGTGTGTCCGGACGGGCGTACACAG
TTTATCTAGTTCAGGTGCGGCACAAAGGCCAGGATTACATTATACGCCGT
CGATTCCGCGAATTCTCTGCCCTCAACGATTGTATCAAGGACGAAGATTT
ACGAGCAATATTTCCTCCCCGCTCTCTGTTCGCCAAAGCCGGTCTCGCCT
GCGCGCTAGAAACACGCCAGAGTCGCTTGGCTTATTACATTAAAGAGCTT
GCTCACAAGCTATCTGGGGAACCATGCAAGGACAAGATTCTCACCTTCCT
TCGAGCCACGGACCTGTGTACCCTTGAGCAGGACGCAGCTGCTCGCCCGT
CCTTCTCGCACTATGACGAAAAGGGAGAGCGGGAATCCTCGGAGATGCGG
CCAGCGATAGCGGCAAGTACTCAAACAATAGGACTGTCTATGATACGGCT
ATCATCAGCGGAGCATGAGGCACAGGCGCCCAAGGCACGACATTCTTTTG
CGGAGATGGCCGAGCACCGGGCAGCATTGTCGCGTCTTGTCCCTCTTCTG
ATCAATGGCATCACGGTGATCAAGCACGGCCGTCGTGGCTCCCCCAAGCT
CCGCCTTATCTTCTGCAACGAGGATTTTTCGCGAATTTTCTGGGCTTCCG
ACAGGATCAACAGTCATAAACGCTCCAATCTCTCCTCCCTATCCATTTCC
AACGTGACAGAGGTGCGAGAAGGGACGGCACCTGATCCCCATCACCCCGG
CCTCTTCGGCACAGTCACCCTCCGTCGACGTCGTGCCTCCTCCCTGGCAG
TACCTGCAATCGTTAGTTGCAGTGGTAGCAACAACAGCAGCACCGGAGAA
TTACAACCGATACCGCGGGCCTTTTCTCTCATCGCGGCTGCTCGTTCCTT
GGACCTTGAGGCACTGACTGCTGATGACTATACTCTCTTGCTGGAGGGGT
TCCGTTCCGCGGTAAAACTCAACATGGCTGCGACCTCAACAGCAGCAACA
GCGGCAGAAACGGAAGTTGATGTGAGGGGAAACAAGGCAGTTCCAGCATT
CGGCTAG
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protein sequence of NO01G02570.1

>NO01G02570.1-protein ID=NO01G02570.1-protein|Name=NO01G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MLQTRNKGIELIRTSECGVPDRHASSKLMPRDIARQSEGEDCISLGIVGK
EVVAIPVRGNSCRRLISSGGPCSVSCVSGRAYTVYLVQVRHKGQDYIIRR
RFREFSALNDCIKDEDLRAIFPPRSLFAKAGLACALETRQSRLAYYIKEL
AHKLSGEPCKDKILTFLRATDLCTLEQDAAARPSFSHYDEKGERESSEMR
PAIAASTQTIGLSMIRLSSAEHEAQAPKARHSFAEMAEHRAALSRLVPLL
INGITVIKHGRRGSPKLRLIFCNEDFSRIFWASDRINSHKRSNLSSLSIS
NVTEVREGTAPDPHHPGLFGTVTLRRRRASSLAVPAIVSCSGSNNSSTGE
LQPIPRAFSLIAAARSLDLEALTADDYTLLLEGFRSAVKLNMAATSTAAT
AAETEVDVRGNKAVPAFG*
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mRNA from alignment at chr1:666758..668269+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02570.1 ID=NO01G02570.1|Name=NO01G02570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1512bp|location=Sequence derived from alignment at chr1:666758..668269+ (Nannochloropsis oceanica)
ATGCTACAGACAAGAAACAAAGGTATAGAGCTGATAAGGACCAGCGAGTG
CGGCGTCCCCGACCGACATGCCAGCAGCAAGCTAATGCCAAGAGATATCG
CGCGCCAGTCTGAGGGAGAAGACTGCATTAGCCTGGGCATTGTAGGCAAG
GAAGTGGTGGCTATCCCGGTCAGGGGCAACAGTTGCAGAAGGCTGATCAG
CTCCGGTGGTCCTTGTTCCGTTTCATGTGTGTCCGGACGGGCGTACACAG
TTTATCTAGTTCAGGTGCGGCACAAAGGCCAGGATTACATTATACGCCGT
CGATTCCGCGAATTCTCTGCCCTCAACGATTGTATCAAGGACGAAGATTT
ACGAGCAATATTTCCTCCCCGCTCTCTGTTCGCCAAAGGTACATTACAGT
GAATGCTTGAGCTAAATTTTGGTCATCCATTGGTCTGCTTGCTTATGCTA
ACACCGCTCCACTGCTTCATTCCCACCTCAACATTACAGCCGGTCTCGCC
TGCGCGCTAGAAACACGCCAGAGTCGCTTGGCTTATTACATTAAAGAGCT
TGCTCACAAGCTATCTGGGGAACCATGCAAGGACAAGATTCTCACCTTCC
TTCGAGCCACGGACCTGTGTACCCTTGAGCAGGACGCAGCTGCTCGCCCG
TCCTTCTCGCACTATGACGAAAAGGGAGAGCGGGAATCCTCGGAGATGCG
GCCAGCGATAGCGGCAAGTACTCAAACAATAGGACTGTCTATGATACGGC
TATCATCAGCGGAGCATGAGGCACAGGCGCCCAAGGCACGACATTCTTTT
GCGGAGATGGCCGAGCACCGGGCAGCATTGTCGCGTCTTGTCCCTCTTCT
GATCAATGGCATCACGGTGATCAAGGTAAGTTTCAGGCTAGCTCCTAATT
GAGTATACCTCTGCCGTATTTGGCCCCTCTTTTCTGTATTTTTTGCCCGC
ATTGTTCGCCTCGCTGAATCGTCAGTCTCTTTTCTCGTCAATGTCTCTCA
CACCACCTAACTATCAACATCACAAACAGCACGGCCGTCGTGGCTCCCCC
AAGCTCCGCCTTATCTTCTGCAACGAGGATTTTTCGCGAATTTTCTGGGC
TTCCGACAGGATCAACAGTCATAAACGCTCCAATCTCTCCTCCCTATCCA
TTTCCAACGTGACAGAGGTGCGAGAAGGGACGGCACCTGATCCCCATCAC
CCCGGCCTCTTCGGCACAGTCACCCTCCGTCGACGTCGTGCCTCCTCCCT
GGCAGTACCTGCAATCGTTAGTTGCAGTGGTAGCAACAACAGCAGCACCG
GAGAATTACAACCGATACCGCGGGCCTTTTCTCTCATCGCGGCTGCTCGT
TCCTTGGACCTTGAGGCACTGACTGCTGATGACTATACTCTCTTGCTGGA
GGGGTTCCGTTCCGCGGTAAAACTCAACATGGCTGCGACCTCAACAGCAG
CAACAGCGGCAGAAACGGAAGTTGATGTGAGGGGAAACAAGGCAGTTCCA
GCATTCGGCTAG
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Coding sequence (CDS) from alignment at chr1:666758..668269+

>NO01G02570.1 ID=NO01G02570.1|Name=NO01G02570.1|organism=Nannochloropsis oceanica|type=CDS|length=1257bp|location=Sequence derived from alignment at chr1:666758..668269+ (Nannochloropsis oceanica)
ATGCTACAGACAAGAAACAAAGGTATAGAGCTGATAAGGACCAGCGAGTG
CGGCGTCCCCGACCGACATGCCAGCAGCAAGCTAATGCCAAGAGATATCG
CGCGCCAGTCTGAGGGAGAAGACTGCATTAGCCTGGGCATTGTAGGCAAG
GAAGTGGTGGCTATCCCGGTCAGGGGCAACAGTTGCAGAAGGCTGATCAG
CTCCGGTGGTCCTTGTTCCGTTTCATGTGTGTCCGGACGGGCGTACACAG
TTTATCTAGTTCAGGTGCGGCACAAAGGCCAGGATTACATTATACGCCGT
CGATTCCGCGAATTCTCTGCCCTCAACGATTGTATCAAGGACGAAGATTT
ACGAGCAATATTTCCTCCCCGCTCTCTGTTCGCCAAAGCCGGTCTCGCCT
GCGCGCTAGAAACACGCCAGAGTCGCTTGGCTTATTACATTAAAGAGCTT
GCTCACAAGCTATCTGGGGAACCATGCAAGGACAAGATTCTCACCTTCCT
TCGAGCCACGGACCTGTGTACCCTTGAGCAGGACGCAGCTGCTCGCCCGT
CCTTCTCGCACTATGACGAAAAGGGAGAGCGGGAATCCTCGGAGATGCGG
CCAGCGATAGCGGCAAGTACTCAAACAATAGGACTGTCTATGATACGGCT
ATCATCAGCGGAGCATGAGGCACAGGCGCCCAAGGCACGACATTCTTTTG
CGGAGATGGCCGAGCACCGGGCAGCATTGTCGCGTCTTGTCCCTCTTCTG
ATCAATGGCATCACGGTGATCAAGCACGGCCGTCGTGGCTCCCCCAAGCT
CCGCCTTATCTTCTGCAACGAGGATTTTTCGCGAATTTTCTGGGCTTCCG
ACAGGATCAACAGTCATAAACGCTCCAATCTCTCCTCCCTATCCATTTCC
AACGTGACAGAGGTGCGAGAAGGGACGGCACCTGATCCCCATCACCCCGG
CCTCTTCGGCACAGTCACCCTCCGTCGACGTCGTGCCTCCTCCCTGGCAG
TACCTGCAATCGTTAGTTGCAGTGGTAGCAACAACAGCAGCACCGGAGAA
TTACAACCGATACCGCGGGCCTTTTCTCTCATCGCGGCTGCTCGTTCCTT
GGACCTTGAGGCACTGACTGCTGATGACTATACTCTCTTGCTGGAGGGGT
TCCGTTCCGCGGTAAAACTCAACATGGCTGCGACCTCAACAGCAGCAACA
GCGGCAGAAACGGAAGTTGATGTGAGGGGAAACAAGGCAGTTCCAGCATT
CGGCTAG
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Synonyms
Publications