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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr1 | genome | chr1:645283..647604 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G02480.1 vs.
Match: EWM29177.1 (deah (asp-glu-ala-his) box polypeptide 35 [Nannochloropsis gaditana]) HSP 1 Score: 1125.5 bits (2910), Expect = 0.000e+0 Identity = 556/702 (79.20%), Postives = 619/702 (88.18%), Query Frame = 0
Query: 1 MTFWKPGAAAPRLREERPVGLSEAGASSTLGYNPRSKLPLKQQRLQLPIAQARSGILYALERYRTLVLVGETGSGKSTQVPQYLHEGGWTHGGRVVLCTQPRRVAAVTVASRVAQEMGCILGQQVGYVVRFDSRVDEAGTRTAIKFVTDGLLLRETLYDPLLSAYSVIMLDEAHERSMYTDVLLGLLKKVRKRRPELRIIISSATADAEAFRDYFETHTHSGGSISNKADNQAIGTHDATIISIMGRQHAVDVLYMEKPARNYLRAAVEAVLSIVQGEGRGDILVFLPGMEEIDQAVTNTKEQLGGLGYGVEDAVLVLPLYASLPQHLQMKALGPAPRHVERKVLFATNIAETSLTIEGVRFIVDTGFVKLPVYDVRTGFESLVTTPISKASAAQRAGRAGRTGPGKCMRLYTEEAFIKLPAHTLPEVQRSNLAWMILQLKALGIDEVMSFDFISQPSAEAMMRGLELLYALGALDDRCHLSSELGEKMAEFPVEPRLAKVLLASFDFHCTEEALTVVALLQVQNLWTSPKGRESRALQEESMSDLAQREGDHLTLLHIYRAWEEAGRSMEWCTERFINPRSLARAREIRGQLRKYLERYKPAGSVFASCCEDTEALRRCIVAGFFFNAARLQSDGRYFTVRGEHPVALHPASVLAKYGTPAEWVVFHDVVLTTEPFLRDCSRIQPLWLMELAPHFYAYGGG 703
M FWKPG AAP+L ERP GLSE A T+GYNP +LP KQQ+L LPIA+AR ILYALERY+T+VLVGETGSGKSTQVPQYLHE GWT G RVVLCTQPRRVAA+TVA+RVA+EMGC LG VGY VRFDSRVDE G+RT IKFVTDGLLLRETLYDPLLSAYSVI+LDEAHERSMYTDVLLGLLKKVRKRRPELRI+ISSATADAE FRD+FET T+ G S ++ HD+TI+SI GRQHAVDV Y+ K RNYLR+AV+ VLSI++ EGRGD+LVFLPGMEEID+AV KE L LG G+E+ VLVLPL++SLP HLQMKAL P RHVERKV+FATNIAETSLTIEG+RFIVD GFVKLPVYDVRTGFESLVTT +S+ASA QRAGRAGRTGPGKC RLYTEEAF L AHT PEVQRSNLAWMILQLKALGID+VM+FDFI+QPSAEA+MRGLELLYALGALDDRC L+ +LGEKMAEFPVEPRLAK+LLASFDFHCTEEALT+VALLQVQN+WT+PKGRESR +QE +M++LA R+GDHLTLL IYR WEEAGRS EWC+E F+NPRSL RAREIRGQLR+YLERYKP GSVFASC +D+EALRRC++ GFFFNAARL+SDGRY+TVR HPVALH SVLAKYG PAEW+V++DVV+T+EPFLRDCSRIQPLWLMELAPHFYAYGGG
Sbjct: 1 MAFWKPGTAAPQLGLERPTGLSETEAGDTIGYNPHYRLPFKQQKLLLPIARARENILYALERYKTVVLVGETGSGKSTQVPQYLHESGWTQGDRVVLCTQPRRVAAITVAARVAEEMGCKLGGIVGYAVRFDSRVDEGGSRTRIKFVTDGLLLRETLYDPLLSAYSVIILDEAHERSMYTDVLLGLLKKVRKRRPELRIMISSATADAETFRDFFETFTYKGVS----SEQSEGSNHDSTIVSITGRQHAVDVFYLSKAPRNYLRSAVDTVLSIIESEGRGDVLVFLPGMEEIDEAVVTVKEHLNALG-GMENVVLVLPLHSSLPHHLQMKALQPPSRHVERKVIFATNIAETSLTIEGIRFIVDCGFVKLPVYDVRTGFESLVTTSVSRASATQRAGRAGRTGPGKCFRLYTEEAFSTLSAHTTPEVQRSNLAWMILQLKALGIDQVMTFDFIAQPSAEALMRGLELLYALGALDDRCRLTPDLGEKMAEFPVEPRLAKLLLASFDFHCTEEALTLVALLQVQNVWTNPKGRESRTIQEAAMAELASRDGDHLTLLAIYREWEEAGRSTEWCSEHFLNPRSLTRAREIRGQLRRYLERYKPKGSVFASCVDDSEALRRCVLTGFFFNAARLKSDGRYYTVRDGHPVALHSTSVLAKYGAPAEWIVYNDVVITSEPFLRDCSRIQPLWLMELAPHFYAYGGG 697
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G02480.1 ID=NO01G02480.1|Name=NO01G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2322bp
ATCACAGGCGCGGTCATGACGTTCTGGAAGCCGGGAGCCGCGGCACCAAG
GCTGAGAGAGGAGCGGCCGGTGGGGTTGTCGGAAGCGGGTGCTAGCAGCA
CCCTGGGGTACAACCCTCGCAGCAAGCTCCCTCTCAAGCAGCAACGTCTG
CAGTTGCCAATTGCTCAGGCTCGATCCGGCATTTTGTATGCACTGGAGCG
CTACCGTACGCTGGTTCTGGTAGGTGAGACGGGCTCGGGCAAGTCTACGC
AGGTACCGCAGTATTTGCACGAAGGGGGGTGGACTCATGGTGGGAGGGTA
GTACTCTGCACACAGCCCCGCCGCGTGGCGGCCGTTACTGTGGCCTCACG
CGTGGCTCAAGAGATGGGTTGCATACTAGGACAACAAGTGGGCTATGTCG
TACGGTTTGACAGTCGTGTGGATGAGGCTGGGACGCGCACGGCCATTAAA
TTCGTGACGGACGGCCTGCTGTTGAGGGAGACGCTTTATGACCCCTTGCT
TTCAGCCTATTCGGTCATCATGCTCGACGAGGCCCATGAACGCAGCATGT
ACACCGATGTGCTTTTAGGTTTGTTGAAAAAAGTGCGCAAGCGCCGGCCC
GAACTTCGCATCATCATCTCGTCCGCCACGGCCGACGCAGAGGCGTTTCG
GGACTATTTTGAGACGCATACCCATAGTGGTGGCAGCATCAGCAACAAGG
CAGACAACCAAGCCATTGGCACACACGACGCCACCATCATAAGCATTATG
GGGCGACAACATGCCGTAGACGTATTGTACATGGAAAAGCCGGCGCGGAA
CTACTTGCGGGCGGCCGTCGAGGCGGTTCTCTCCATCGTGCAAGGAGAGG
GCAGGGGGGACATTCTCGTCTTTTTGCCAGGCATGGAAGAGATAGACCAA
GCTGTCACCAACACAAAAGAACAGTTGGGGGGCCTGGGCTACGGAGTGGA
AGATGCGGTGCTGGTTCTGCCTCTGTACGCCTCCCTGCCGCAGCACCTGC
AGATGAAAGCTCTGGGGCCTGCCCCACGACACGTTGAGCGCAAGGTCCTT
TTTGCCACCAACATCGCCGAGACTTCTTTGACCATTGAAGGAGTCCGTTT
TATTGTAGATACAGGATTTGTCAAACTTCCTGTGTATGACGTGCGGACGG
GATTTGAATCCCTCGTCACCACGCCCATCTCCAAGGCCAGCGCCGCACAA
CGCGCCGGTCGAGCAGGCCGCACGGGACCGGGGAAATGTATGCGGTTGTA
CACCGAGGAGGCTTTCATAAAACTACCTGCTCATACTTTGCCCGAGGTAC
AGCGGAGCAACTTGGCTTGGATGATTCTGCAGCTCAAGGCGCTGGGGATC
GACGAGGTCATGAGCTTTGACTTCATTTCGCAGCCCTCGGCCGAAGCTAT
GATGCGTGGCCTAGAGCTGCTGTACGCCCTGGGCGCGCTGGACGATCGCT
GCCATCTCAGCTCGGAGCTTGGAGAGAAAATGGCCGAGTTCCCGGTAGAA
CCTCGCTTGGCCAAGGTGTTGCTAGCTTCATTTGATTTCCACTGCACGGA
AGAGGCATTGACGGTAGTGGCCCTCCTCCAAGTCCAGAACTTGTGGACGA
GCCCCAAGGGCCGCGAGAGCCGGGCGCTTCAGGAAGAGTCCATGTCCGAT
TTGGCTCAACGTGAGGGAGATCATCTGACGCTGCTGCATATCTATCGAGC
ATGGGAAGAGGCAGGCCGGTCCATGGAGTGGTGCACAGAGCGCTTTATTA
ATCCACGCAGCCTAGCCCGCGCGAGAGAGATTCGAGGCCAGCTCCGAAAA
TACTTGGAGAGATACAAGCCAGCCGGCAGTGTCTTTGCTTCGTGCTGCGA
GGACACCGAGGCTCTGCGCCGGTGCATCGTGGCAGGATTTTTTTTTAATG
CGGCACGGCTTCAGAGCGACGGAAGGTATTTCACGGTGCGAGGGGAGCAC
CCTGTGGCCCTCCACCCGGCTTCTGTGCTGGCCAAGTATGGGACACCGGC
AGAATGGGTCGTTTTTCATGACGTCGTTCTAACCACCGAACCTTTCTTGC
GGGATTGTTCTCGTATCCAGCCCCTTTGGTTGATGGAGCTGGCCCCGCAC
TTCTATGCCTACGGTGGCGGAGGACGAAACGTATGGCCTAACCTGGTGTA
AGAAAAACCTGCAATATATACGGAATCCGCAAATTGTTTTTTATTATGCG
AGACTTGGCCGCCAAACAGAAAGGTGTACAAAAAGAAACGTAGAAAGTGA
GTTTACGTAGATATAGTAAGTGTAGGTACAGTAAGAAGCAAGTAATTTAA
ATAAAAAAAAATCGAGCATGCG back to topprotein sequence of NO01G02480.1 >NO01G02480.1-protein ID=NO01G02480.1-protein|Name=NO01G02480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=712bp
MTFWKPGAAAPRLREERPVGLSEAGASSTLGYNPRSKLPLKQQRLQLPIA
QARSGILYALERYRTLVLVGETGSGKSTQVPQYLHEGGWTHGGRVVLCTQ
PRRVAAVTVASRVAQEMGCILGQQVGYVVRFDSRVDEAGTRTAIKFVTDG
LLLRETLYDPLLSAYSVIMLDEAHERSMYTDVLLGLLKKVRKRRPELRII
ISSATADAEAFRDYFETHTHSGGSISNKADNQAIGTHDATIISIMGRQHA
VDVLYMEKPARNYLRAAVEAVLSIVQGEGRGDILVFLPGMEEIDQAVTNT
KEQLGGLGYGVEDAVLVLPLYASLPQHLQMKALGPAPRHVERKVLFATNI
AETSLTIEGVRFIVDTGFVKLPVYDVRTGFESLVTTPISKASAAQRAGRA
GRTGPGKCMRLYTEEAFIKLPAHTLPEVQRSNLAWMILQLKALGIDEVMS
FDFISQPSAEAMMRGLELLYALGALDDRCHLSSELGEKMAEFPVEPRLAK
VLLASFDFHCTEEALTVVALLQVQNLWTSPKGRESRALQEESMSDLAQRE
GDHLTLLHIYRAWEEAGRSMEWCTERFINPRSLARAREIRGQLRKYLERY
KPAGSVFASCCEDTEALRRCIVAGFFFNAARLQSDGRYFTVRGEHPVALH
PASVLAKYGTPAEWVVFHDVVLTTEPFLRDCSRIQPLWLMELAPHFYAYG
GGGRNVWPNLV* back to topmRNA from alignment at chr1:645283..647604+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G02480.1 ID=NO01G02480.1|Name=NO01G02480.1|organism=Nannochloropsis oceanica|type=mRNA|length=2322bp|location=Sequence derived from alignment at chr1:645283..647604+ (Nannochloropsis oceanica)
ATCACAGGCGCGGTCATGACGTTCTGGAAGCCGGGAGCCGCGGCACCAAG
GCTGAGAGAGGAGCGGCCGGTGGGGTTGTCGGAAGCGGGTGCTAGCAGCA
CCCTGGGGTACAACCCTCGCAGCAAGCTCCCTCTCAAGCAGCAACGTCTG
CAGTTGCCAATTGCTCAGGCTCGATCCGGCATTTTGTATGCACTGGAGCG
CTACCGTACGCTGGTTCTGGTAGGTGAGACGGGCTCGGGCAAGTCTACGC
AGGTACCGCAGTATTTGCACGAAGGGGGGTGGACTCATGGTGGGAGGGTA
GTACTCTGCACACAGCCCCGCCGCGTGGCGGCCGTTACTGTGGCCTCACG
CGTGGCTCAAGAGATGGGTTGCATACTAGGACAACAAGTGGGCTATGTCG
TACGGTTTGACAGTCGTGTGGATGAGGCTGGGACGCGCACGGCCATTAAA
TTCGTGACGGACGGCCTGCTGTTGAGGGAGACGCTTTATGACCCCTTGCT
TTCAGCCTATTCGGTCATCATGCTCGACGAGGCCCATGAACGCAGCATGT
ACACCGATGTGCTTTTAGGTTTGTTGAAAAAAGTGCGCAAGCGCCGGCCC
GAACTTCGCATCATCATCTCGTCCGCCACGGCCGACGCAGAGGCGTTTCG
GGACTATTTTGAGACGCATACCCATAGTGGTGGCAGCATCAGCAACAAGG
CAGACAACCAAGCCATTGGCACACACGACGCCACCATCATAAGCATTATG
GGGCGACAACATGCCGTAGACGTATTGTACATGGAAAAGCCGGCGCGGAA
CTACTTGCGGGCGGCCGTCGAGGCGGTTCTCTCCATCGTGCAAGGAGAGG
GCAGGGGGGACATTCTCGTCTTTTTGCCAGGCATGGAAGAGATAGACCAA
GCTGTCACCAACACAAAAGAACAGTTGGGGGGCCTGGGCTACGGAGTGGA
AGATGCGGTGCTGGTTCTGCCTCTGTACGCCTCCCTGCCGCAGCACCTGC
AGATGAAAGCTCTGGGGCCTGCCCCACGACACGTTGAGCGCAAGGTCCTT
TTTGCCACCAACATCGCCGAGACTTCTTTGACCATTGAAGGAGTCCGTTT
TATTGTAGATACAGGATTTGTCAAACTTCCTGTGTATGACGTGCGGACGG
GATTTGAATCCCTCGTCACCACGCCCATCTCCAAGGCCAGCGCCGCACAA
CGCGCCGGTCGAGCAGGCCGCACGGGACCGGGGAAATGTATGCGGTTGTA
CACCGAGGAGGCTTTCATAAAACTACCTGCTCATACTTTGCCCGAGGTAC
AGCGGAGCAACTTGGCTTGGATGATTCTGCAGCTCAAGGCGCTGGGGATC
GACGAGGTCATGAGCTTTGACTTCATTTCGCAGCCCTCGGCCGAAGCTAT
GATGCGTGGCCTAGAGCTGCTGTACGCCCTGGGCGCGCTGGACGATCGCT
GCCATCTCAGCTCGGAGCTTGGAGAGAAAATGGCCGAGTTCCCGGTAGAA
CCTCGCTTGGCCAAGGTGTTGCTAGCTTCATTTGATTTCCACTGCACGGA
AGAGGCATTGACGGTAGTGGCCCTCCTCCAAGTCCAGAACTTGTGGACGA
GCCCCAAGGGCCGCGAGAGCCGGGCGCTTCAGGAAGAGTCCATGTCCGAT
TTGGCTCAACGTGAGGGAGATCATCTGACGCTGCTGCATATCTATCGAGC
ATGGGAAGAGGCAGGCCGGTCCATGGAGTGGTGCACAGAGCGCTTTATTA
ATCCACGCAGCCTAGCCCGCGCGAGAGAGATTCGAGGCCAGCTCCGAAAA
TACTTGGAGAGATACAAGCCAGCCGGCAGTGTCTTTGCTTCGTGCTGCGA
GGACACCGAGGCTCTGCGCCGGTGCATCGTGGCAGGATTTTTTTTTAATG
CGGCACGGCTTCAGAGCGACGGAAGGTATTTCACGGTGCGAGGGGAGCAC
CCTGTGGCCCTCCACCCGGCTTCTGTGCTGGCCAAGTATGGGACACCGGC
AGAATGGGTCGTTTTTCATGACGTCGTTCTAACCACCGAACCTTTCTTGC
GGGATTGTTCTCGTATCCAGCCCCTTTGGTTGATGGAGCTGGCCCCGCAC
TTCTATGCCTACGGTGGCGGAGGACGAAACGTATGGCCTAACCTGGTGTA
AGAAAAACCTGCAATATATACGGAATCCGCAAATTGTTTTTTATTATGCG
AGACTTGGCCGCCAAACAGAAAGGTGTACAAAAAGAAACGTAGAAAGTGA
GTTTACGTAGATATAGTAAGTGTAGGTACAGTAAGAAGCAAGTAATTTAA
ATAAAAAAAAATCGAGCATGCG back to topCoding sequence (CDS) from alignment at chr1:645283..647604+ >NO01G02480.1 ID=NO01G02480.1|Name=NO01G02480.1|organism=Nannochloropsis oceanica|type=CDS|length=2136bp|location=Sequence derived from alignment at chr1:645283..647604+ (Nannochloropsis oceanica)
ATGACGTTCTGGAAGCCGGGAGCCGCGGCACCAAGGCTGAGAGAGGAGCG
GCCGGTGGGGTTGTCGGAAGCGGGTGCTAGCAGCACCCTGGGGTACAACC
CTCGCAGCAAGCTCCCTCTCAAGCAGCAACGTCTGCAGTTGCCAATTGCT
CAGGCTCGATCCGGCATTTTGTATGCACTGGAGCGCTACCGTACGCTGGT
TCTGGTAGGTGAGACGGGCTCGGGCAAGTCTACGCAGGTACCGCAGTATT
TGCACGAAGGGGGGTGGACTCATGGTGGGAGGGTAGTACTCTGCACACAG
CCCCGCCGCGTGGCGGCCGTTACTGTGGCCTCACGCGTGGCTCAAGAGAT
GGGTTGCATACTAGGACAACAAGTGGGCTATGTCGTACGGTTTGACAGTC
GTGTGGATGAGGCTGGGACGCGCACGGCCATTAAATTCGTGACGGACGGC
CTGCTGTTGAGGGAGACGCTTTATGACCCCTTGCTTTCAGCCTATTCGGT
CATCATGCTCGACGAGGCCCATGAACGCAGCATGTACACCGATGTGCTTT
TAGGTTTGTTGAAAAAAGTGCGCAAGCGCCGGCCCGAACTTCGCATCATC
ATCTCGTCCGCCACGGCCGACGCAGAGGCGTTTCGGGACTATTTTGAGAC
GCATACCCATAGTGGTGGCAGCATCAGCAACAAGGCAGACAACCAAGCCA
TTGGCACACACGACGCCACCATCATAAGCATTATGGGGCGACAACATGCC
GTAGACGTATTGTACATGGAAAAGCCGGCGCGGAACTACTTGCGGGCGGC
CGTCGAGGCGGTTCTCTCCATCGTGCAAGGAGAGGGCAGGGGGGACATTC
TCGTCTTTTTGCCAGGCATGGAAGAGATAGACCAAGCTGTCACCAACACA
AAAGAACAGTTGGGGGGCCTGGGCTACGGAGTGGAAGATGCGGTGCTGGT
TCTGCCTCTGTACGCCTCCCTGCCGCAGCACCTGCAGATGAAAGCTCTGG
GGCCTGCCCCACGACACGTTGAGCGCAAGGTCCTTTTTGCCACCAACATC
GCCGAGACTTCTTTGACCATTGAAGGAGTCCGTTTTATTGTAGATACAGG
ATTTGTCAAACTTCCTGTGTATGACGTGCGGACGGGATTTGAATCCCTCG
TCACCACGCCCATCTCCAAGGCCAGCGCCGCACAACGCGCCGGTCGAGCA
GGCCGCACGGGACCGGGGAAATGTATGCGGTTGTACACCGAGGAGGCTTT
CATAAAACTACCTGCTCATACTTTGCCCGAGGTACAGCGGAGCAACTTGG
CTTGGATGATTCTGCAGCTCAAGGCGCTGGGGATCGACGAGGTCATGAGC
TTTGACTTCATTTCGCAGCCCTCGGCCGAAGCTATGATGCGTGGCCTAGA
GCTGCTGTACGCCCTGGGCGCGCTGGACGATCGCTGCCATCTCAGCTCGG
AGCTTGGAGAGAAAATGGCCGAGTTCCCGGTAGAACCTCGCTTGGCCAAG
GTGTTGCTAGCTTCATTTGATTTCCACTGCACGGAAGAGGCATTGACGGT
AGTGGCCCTCCTCCAAGTCCAGAACTTGTGGACGAGCCCCAAGGGCCGCG
AGAGCCGGGCGCTTCAGGAAGAGTCCATGTCCGATTTGGCTCAACGTGAG
GGAGATCATCTGACGCTGCTGCATATCTATCGAGCATGGGAAGAGGCAGG
CCGGTCCATGGAGTGGTGCACAGAGCGCTTTATTAATCCACGCAGCCTAG
CCCGCGCGAGAGAGATTCGAGGCCAGCTCCGAAAATACTTGGAGAGATAC
AAGCCAGCCGGCAGTGTCTTTGCTTCGTGCTGCGAGGACACCGAGGCTCT
GCGCCGGTGCATCGTGGCAGGATTTTTTTTTAATGCGGCACGGCTTCAGA
GCGACGGAAGGTATTTCACGGTGCGAGGGGAGCACCCTGTGGCCCTCCAC
CCGGCTTCTGTGCTGGCCAAGTATGGGACACCGGCAGAATGGGTCGTTTT
TCATGACGTCGTTCTAACCACCGAACCTTTCTTGCGGGATTGTTCTCGTA
TCCAGCCCCTTTGGTTGATGGAGCTGGCCCCGCACTTCTATGCCTACGGT
GGCGGAGGACGAAACGTATGGCCTAACCTGGTGTAA back to top
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