NO01G02440.1, NO01G02440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02440.1
Unique NameNO01G02440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1023
Alignment locationchr1:631904..632926 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:631904..632926 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02440.1 vs.
Match: EWM29119.1 (hypothetical protein Naga_100007g75 [Nannochloropsis gaditana])

HSP 1 Score: 166.4 bits (420), Expect = 1.600e-37
Identity = 85/143 (59.44%), Postives = 102/143 (71.33%), Query Frame = 0 
Query:   92 VTLDDIKGLSKEECLCLFRLLRPATLQQLHGEWQGEILAMGLLYPLAYLFWHWRLGRGWWLGKGIDAESRQGYNTFYNHGITTRNRRFEVFMGPSAYGWEEEKEGQEGETERRVEVGRHKQSE-IGVDEGAGNDGVPHERKGS 234
            +T DDIKGLSKEECL LFRLL PATLQQLHGEWQGEILAMG+ YPLAYL WHWRLGRGWWLGKG+D  +  GYN FYNHGIT+R+RRF+ + G SAY  E   +        R+ V +++ +  + V+  A +  V   RK S
Sbjct:    1 MTADDIKGLSKEECLFLFRLLPPATLQQLHGEWQGEILAMGMSYPLAYLLWHWRLGRGWWLGKGVDQATGCGYNVFYNHGITSRSRRFDAYTGLSAY--EARTKDPRDTRHSRLYVCKNQANRYLAVERAAEDKDVNSMRKWS 141
The following BLAST results are available for this feature:
BLAST of NO01G02440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29119.11.600e-3759.44hypothetical protein Naga_100007g75 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02440NO01G02440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02440.1NO01G02440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02440.1.cds1NO01G02440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02440.1 ID=NO01G02440.1|Name=NO01G02440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1023bp
ATGTATGACCGTCTGATTCTAATCGCTGCCGTGCTGATCCCGCTGCTGCC
CTCAATTATCGTGGTTATGGCCATGTGCTTTTTCCTCCATTCCCGACATT
CCTTACGAAGGCGCAAATGTTCCGGCGAAAAAATTATTTTAGACGCCACC
TGCAGTCAGCAGGGTCCCGATTACATCAGCGTCCACCCTGGCAGCGCCGC
CACTACCACTACCCGCCTTCATCGCGGCCGCTTCTGGCCGTTGGAACGCA
AGGGTAAAGCCAGCCTGGAAGATGTTACACTGGACGACATCAAGGGTCTG
AGCAAGGAAGAATGCTTGTGTCTATTCAGGCTTCTCCGTCCCGCGACTTT
GCAGCAGTTGCATGGCGAATGGCAAGGTGAAATATTGGCGATGGGTCTCC
TTTATCCCTTGGCGTACTTATTCTGGCATTGGCGACTGGGGCGGGGGTGG
TGGTTGGGCAAGGGCATTGATGCGGAGAGCAGGCAGGGCTACAACACATT
TTACAATCACGGTATCACCACGCGTAATAGGCGGTTTGAAGTGTTCATGG
GCCCCAGTGCCTATGGGTGGGAAGAAGAGAAAGAAGGACAGGAGGGAGAG
ACCGAGAGGCGTGTGGAAGTAGGTAGACACAAACAAAGCGAGATAGGCGT
CGATGAGGGTGCTGGAAATGATGGAGTTCCACACGAACGGAAGGGCAGTA
GGGTTCAGCAATTTGAAAGTAGATCAGACAGATGCCACTGCGCTGGTAGT
AGTCGCATTGGTGTAGAAGAGCGGAGAGGCACTCGCAACAGGAGCAGCAC
GGACCTTGCCAGTGGTGGGGAGTCGCTGCATTTAGTGTACGCGCCGTACA
ACGACGGATTCTTTCATCGAATGCACGAAGAGGTGCGACGCGTGCACGAT
GGTCTCTTTCTGGGCTTTGGCTCTCCCGGAGGTTTAAGGGGAAGGACGCC
TTTTAACAGCATACCGTTTCTGCTTGTCGCGCCTAAGGCCCCCCTCAAGC
AGTGGGATCAGGAGAGGAATTAA
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protein sequence of NO01G02440.1

>NO01G02440.1-protein ID=NO01G02440.1-protein|Name=NO01G02440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MYDRLILIAAVLIPLLPSIIVVMAMCFFLHSRHSLRRRKCSGEKIILDAT
CSQQGPDYISVHPGSAATTTTRLHRGRFWPLERKGKASLEDVTLDDIKGL
SKEECLCLFRLLRPATLQQLHGEWQGEILAMGLLYPLAYLFWHWRLGRGW
WLGKGIDAESRQGYNTFYNHGITTRNRRFEVFMGPSAYGWEEEKEGQEGE
TERRVEVGRHKQSEIGVDEGAGNDGVPHERKGSRVQQFESRSDRCHCAGS
SRIGVEERRGTRNRSSTDLASGGESLHLVYAPYNDGFFHRMHEEVRRVHD
GLFLGFGSPGGLRGRTPFNSIPFLLVAPKAPLKQWDQERN*
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mRNA from alignment at chr1:631904..632926-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02440.1 ID=NO01G02440.1|Name=NO01G02440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1023bp|location=Sequence derived from alignment at chr1:631904..632926- (Nannochloropsis oceanica)
ATGTATGACCGTCTGATTCTAATCGCTGCCGTGCTGATCCCGCTGCTGCC
CTCAATTATCGTGGTTATGGCCATGTGCTTTTTCCTCCATTCCCGACATT
CCTTACGAAGGCGCAAATGTTCCGGCGAAAAAATTATTTTAGACGCCACC
TGCAGTCAGCAGGGTCCCGATTACATCAGCGTCCACCCTGGCAGCGCCGC
CACTACCACTACCCGCCTTCATCGCGGCCGCTTCTGGCCGTTGGAACGCA
AGGGTAAAGCCAGCCTGGAAGATGTTACACTGGACGACATCAAGGGTCTG
AGCAAGGAAGAATGCTTGTGTCTATTCAGGCTTCTCCGTCCCGCGACTTT
GCAGCAGTTGCATGGCGAATGGCAAGGTGAAATATTGGCGATGGGTCTCC
TTTATCCCTTGGCGTACTTATTCTGGCATTGGCGACTGGGGCGGGGGTGG
TGGTTGGGCAAGGGCATTGATGCGGAGAGCAGGCAGGGCTACAACACATT
TTACAATCACGGTATCACCACGCGTAATAGGCGGTTTGAAGTGTTCATGG
GCCCCAGTGCCTATGGGTGGGAAGAAGAGAAAGAAGGACAGGAGGGAGAG
ACCGAGAGGCGTGTGGAAGTAGGTAGACACAAACAAAGCGAGATAGGCGT
CGATGAGGGTGCTGGAAATGATGGAGTTCCACACGAACGGAAGGGCAGTA
GGGTTCAGCAATTTGAAAGTAGATCAGACAGATGCCACTGCGCTGGTAGT
AGTCGCATTGGTGTAGAAGAGCGGAGAGGCACTCGCAACAGGAGCAGCAC
GGACCTTGCCAGTGGTGGGGAGTCGCTGCATTTAGTGTACGCGCCGTACA
ACGACGGATTCTTTCATCGAATGCACGAAGAGGTGCGACGCGTGCACGAT
GGTCTCTTTCTGGGCTTTGGCTCTCCCGGAGGTTTAAGGGGAAGGACGCC
TTTTAACAGCATACCGTTTCTGCTTGTCGCGCCTAAGGCCCCCCTCAAGC
AGTGGGATCAGGAGAGGAATTAA
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Coding sequence (CDS) from alignment at chr1:631904..632926-

>NO01G02440.1 ID=NO01G02440.1|Name=NO01G02440.1|organism=Nannochloropsis oceanica|type=CDS|length=1023bp|location=Sequence derived from alignment at chr1:631904..632926- (Nannochloropsis oceanica)
ATGTATGACCGTCTGATTCTAATCGCTGCCGTGCTGATCCCGCTGCTGCC
CTCAATTATCGTGGTTATGGCCATGTGCTTTTTCCTCCATTCCCGACATT
CCTTACGAAGGCGCAAATGTTCCGGCGAAAAAATTATTTTAGACGCCACC
TGCAGTCAGCAGGGTCCCGATTACATCAGCGTCCACCCTGGCAGCGCCGC
CACTACCACTACCCGCCTTCATCGCGGCCGCTTCTGGCCGTTGGAACGCA
AGGGTAAAGCCAGCCTGGAAGATGTTACACTGGACGACATCAAGGGTCTG
AGCAAGGAAGAATGCTTGTGTCTATTCAGGCTTCTCCGTCCCGCGACTTT
GCAGCAGTTGCATGGCGAATGGCAAGGTGAAATATTGGCGATGGGTCTCC
TTTATCCCTTGGCGTACTTATTCTGGCATTGGCGACTGGGGCGGGGGTGG
TGGTTGGGCAAGGGCATTGATGCGGAGAGCAGGCAGGGCTACAACACATT
TTACAATCACGGTATCACCACGCGTAATAGGCGGTTTGAAGTGTTCATGG
GCCCCAGTGCCTATGGGTGGGAAGAAGAGAAAGAAGGACAGGAGGGAGAG
ACCGAGAGGCGTGTGGAAGTAGGTAGACACAAACAAAGCGAGATAGGCGT
CGATGAGGGTGCTGGAAATGATGGAGTTCCACACGAACGGAAGGGCAGTA
GGGTTCAGCAATTTGAAAGTAGATCAGACAGATGCCACTGCGCTGGTAGT
AGTCGCATTGGTGTAGAAGAGCGGAGAGGCACTCGCAACAGGAGCAGCAC
GGACCTTGCCAGTGGTGGGGAGTCGCTGCATTTAGTGTACGCGCCGTACA
ACGACGGATTCTTTCATCGAATGCACGAAGAGGTGCGACGCGTGCACGAT
GGTCTCTTTCTGGGCTTTGGCTCTCCCGGAGGTTTAAGGGGAAGGACGCC
TTTTAACAGCATACCGTTTCTGCTTGTCGCGCCTAAGGCCCCCCTCAAGC
AGTGGGATCAGGAGAGGAATTAA
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Synonyms
Publications