NO01G02430.1, NO01G02430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02430.1
Unique NameNO01G02430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1134
Alignment locationchr1:630138..631459 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:630138..631459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02430.1 vs.
Match: EWM29174.1 (phospholipase membrane-associated [Nannochloropsis gaditana])

HSP 1 Score: 489.2 bits (1258), Expect = 1.200e-134
Identity = 233/345 (67.54%), Postives = 277/345 (80.29%), Query Frame = 0 
Query:   39 SVCPSFSRPVEPCTSVWNMKPSQVDVVLALGDSITAAFGAKGRHSGFHEARGLSWSIGGDAGARTLPNFIKKHNPNLTGYSMGSRETSLCWGPVCRDIHRQRHDRLNGALSGSTIRNVWFDQLDYLEEQLVSQGID-EESWKVLTLFVGANDLCICCKLPKRTDAIEYSETFRRILLAIRDRFPRTLVNVVEMFNVSAIYCATENKSYCKDVHRLIFLECDCAFKGSESASEPYRKLMDELSQEYNKQMRSVIRDLSKVKNDTWAIALHSFTRDLNITSFPMEMISHRD----------------------------TTIPSLDLQPLCAGEESVFYPGYPPDED 355
            S CP+FSRP  PCTSVW+M+PSQVDVVLA+GDSITAAFGA+G+  GFHE+RGLSWSIGGD GA TLPNFIK+HNPN+TGYS+GSRE SLCWGPVCRD+HR RHDRLNGALSGS +RNVWFDQLDYLE +L++  +D E++WKVLTLFVGANDLC+ CK+ KR D  E++E +RR+L+ IR RFPRTLVNVVE+FNVSAIY ATE++ YC+ VHRL+FLECDCAF G ES + PYR +MDE++  YN+Q+R+VIRDLS+V+N+T+AIALH FTRDLNITSFPMEMIS  D                              IPSL L+PLCAGE+SVFYPG PPD +
Sbjct:   36 SGCPTFSRPAAPCTSVWSMRPSQVDVVLAVGDSITAAFGARGKRGGFHESRGLSWSIGGDEGALTLPNFIKEHNPNVTGYSLGSREASLCWGPVCRDVHRARHDRLNGALSGSMVRNVWFDQLDYLEAELLALNVDVEKTWKVLTLFVGANDLCLVCKMQKRFDPTEFAEYYRRVLIEIRSRFPRTLVNVVELFNVSAIYRATEDQPYCRGVHRLVFLECDCAF-GPESEARPYRDMMDEMATAYNQQVRAVIRDLSQVRNETFAIALHPFTRDLNITSFPMEMISTLDCFHPSAKSHGLTATALWNSMLTPPEKRLRNIPSLTLEPLCAGEDSVFYPGSPPDAE 379
The following BLAST results are available for this feature:
BLAST of NO01G02430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29174.11.200e-13467.54phospholipase membrane-associated [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02430NO01G02430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02430.1NO01G02430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02430.1.cds1NO01G02430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02430.1.cds2NO01G02430.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02430.1 ID=NO01G02430.1|Name=NO01G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1134bp
ATGCCTCACCTGCCGCGTCTCGTTGCCGTTTTCATTGTTATTATCGTCCC
GTCGTACGTGTCCGGAGCGGCTATCGCCCTCACGAAAAATGTGGAGGAGA
CGCCAATCGTCACCTCTGTTTGCCCGAGCTTTAGCCGCCCTGTGGAGCCC
TGTACCTCCGTGTGGAACATGAAGCCGTCGCAAGTGGACGTGGTGCTGGC
TCTCGGGGATTCCATCACTGCAGCCTTTGGAGCCAAAGGGCGACACAGCG
GCTTCCATGAAGCTAGGGGCTTGAGCTGGAGCATTGGCGGCGATGCGGGG
GCCAGGACCTTGCCAAATTTCATCAAGAAGCACAATCCAAATCTTACTGG
CTACTCCATGGGCTCGCGGGAAACCTCTCTATGTTGGGGCCCCGTTTGCC
GAGATATTCATCGACAGAGGCATGATCGACTCAACGGTGCGCTCAGCGGC
TCAACAATACGAAATGTGTGGTTCGACCAACTTGACTACCTGGAGGAGCA
GCTCGTCTCCCAGGGCATAGATGAAGAGAGCTGGAAAGTGCTTACTTTAT
TTGTGGGTGCGAATGACCTTTGTATTTGCTGTAAGCTTCCGAAAAGGACC
GACGCCATAGAGTATTCTGAAACATTTCGACGAATCCTCCTTGCAATTCG
GGATCGCTTTCCGCGGACTCTAGTCAATGTCGTAGAGATGTTTAATGTCT
CAGCCATTTACTGCGCTACAGAGAACAAGTCGTATTGCAAGGACGTCCAC
CGGCTCATTTTTCTGGAATGCGATTGTGCATTCAAAGGGTCAGAATCGGC
CTCCGAACCCTACAGAAAGCTTATGGATGAATTATCACAGGAATACAATA
AACAAATGAGAAGCGTGATCCGGGATCTATCGAAGGTCAAGAATGATACG
TGGGCAATCGCCCTTCACTCCTTTACTCGGGACCTTAACATCACCTCCTT
CCCTATGGAAATGATTTCGCACCGAGACACCACAATTCCCTCGCTGGACT
TGCAGCCCCTTTGCGCGGGAGAGGAGAGTGTGTTTTACCCCGGCTATCCT
CCGGACGAGGACGAGGAGGTCGGGATTGAGGAAGAAAGGATGGTGGGCTT
GATCAATACGGGCAAGATGCTGCGCGAGGCTTGA
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protein sequence of NO01G02430.1

>NO01G02430.1-protein ID=NO01G02430.1-protein|Name=NO01G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MPHLPRLVAVFIVIIVPSYVSGAAIALTKNVEETPIVTSVCPSFSRPVEP
CTSVWNMKPSQVDVVLALGDSITAAFGAKGRHSGFHEARGLSWSIGGDAG
ARTLPNFIKKHNPNLTGYSMGSRETSLCWGPVCRDIHRQRHDRLNGALSG
STIRNVWFDQLDYLEEQLVSQGIDEESWKVLTLFVGANDLCICCKLPKRT
DAIEYSETFRRILLAIRDRFPRTLVNVVEMFNVSAIYCATENKSYCKDVH
RLIFLECDCAFKGSESASEPYRKLMDELSQEYNKQMRSVIRDLSKVKNDT
WAIALHSFTRDLNITSFPMEMISHRDTTIPSLDLQPLCAGEESVFYPGYP
PDEDEEVGIEEERMVGLINTGKMLREA*
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mRNA from alignment at chr1:630138..631459+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02430.1 ID=NO01G02430.1|Name=NO01G02430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1322bp|location=Sequence derived from alignment at chr1:630138..631459+ (Nannochloropsis oceanica)
ATGCCTCACCTGCCGCGTCTCGTTGCCGTTTTCATTGTTATTATCGTCCC
GTCGTACGTGTCCGGAGCGGCTATCGCCCTCACGAAAAATGTGGAGGAGA
CGCCAATCGTCACCTCTGTTTGCCCGAGCTTTAGCCGCCCTGTGGAGCCC
TGTACCTCCGTGTGGAACATGAAGCCGTCGCAAGTGGACGTGGTGCTGGC
TCTCGGGGATTCCATCACTGCAGCCTTTGGAGCCAAAGGGCGACACAGCG
GCTTCCATGAAGCTAGGGGCTTGAGCTGGAGCATTGGCGGCGATGCGGGG
GCCAGGACCTTGCCAAATTTCATCAAGAAGCACAATCCAAATCTTACTGG
CTACTCCATGGGCTCGCGGGAAACCTCTCTATGTTGGGGCCCCGTTTGCC
GAGATATTCATCGACAGAGGCATGATCGACTCAACGGTGCGCTCAGCGGC
TCAACAATACGAAATGTGTGGTTCGACCAACTTGACTACCTGGAGGAGCA
GCTCGTCTCCCAGGGCATAGATGAAGAGAGCTGGAAAGTGCTTACTTTAT
TTGTGGGTGCGAATGACCTTTGTATTTGCTGTAAGCTTCCGAAAAGGACC
GACGCCATAGAGTATTCTGAAACATTTCGACGAATCCTCCTTGCAATTCG
GGATCGCTTTCCGCGGACTCTAGTCAATGTCGTAGAGATGTTTAATGTCT
CAGCCATTTACTGCGCTACAGAGAACAAGTCGTATTGCAAGGACGTCCAC
CGGCTCATTTTTCTGGAATGCGATTGTGCATTCAAAGGGTCAGAATCGGC
CTCCGAACCCTACAGAAAGCTTATGGATGAATTATCACAGGAATACAATA
AACAAATGAGAAGCGTGATCCGGGATCTATCGAAGGTCAAGAATGATACG
TGGGCAATCGCCCTTCACTCCTTTACTCGGGACCTTAACATCACCTCCTT
CCCTATGGAAATGATTTCGGTAAGCTATGAATTGAACATTGGATTTGCTG
TAAATGTACACAATGACTTTTGACCTGCCTTTTTTTTCAATTTTCACCTG
CCCAACGATTTTGTTGGGCTTAGGATCTGGATTGCTTCCACCCATCGGAA
AAGAGCCATGCTTTGATCGCCACAGCACTTTGGAACTCGATGCTCACTCC
TCCGCAGCACCGAGACACCACAATTCCCTCGCTGGACTTGCAGCCCCTTT
GCGCGGGAGAGGAGAGTGTGTTTTACCCCGGCTATCCTCCGGACGAGGAC
GAGGAGGTCGGGATTGAGGAAGAAAGGATGGTGGGCTTGATCAATACGGG
CAAGATGCTGCGCGAGGCTTGA
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Coding sequence (CDS) from alignment at chr1:630138..631459+

>NO01G02430.1 ID=NO01G02430.1|Name=NO01G02430.1|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at chr1:630138..631459+ (Nannochloropsis oceanica)
ATGCCTCACCTGCCGCGTCTCGTTGCCGTTTTCATTGTTATTATCGTCCC
GTCGTACGTGTCCGGAGCGGCTATCGCCCTCACGAAAAATGTGGAGGAGA
CGCCAATCGTCACCTCTGTTTGCCCGAGCTTTAGCCGCCCTGTGGAGCCC
TGTACCTCCGTGTGGAACATGAAGCCGTCGCAAGTGGACGTGGTGCTGGC
TCTCGGGGATTCCATCACTGCAGCCTTTGGAGCCAAAGGGCGACACAGCG
GCTTCCATGAAGCTAGGGGCTTGAGCTGGAGCATTGGCGGCGATGCGGGG
GCCAGGACCTTGCCAAATTTCATCAAGAAGCACAATCCAAATCTTACTGG
CTACTCCATGGGCTCGCGGGAAACCTCTCTATGTTGGGGCCCCGTTTGCC
GAGATATTCATCGACAGAGGCATGATCGACTCAACGGTGCGCTCAGCGGC
TCAACAATACGAAATGTGTGGTTCGACCAACTTGACTACCTGGAGGAGCA
GCTCGTCTCCCAGGGCATAGATGAAGAGAGCTGGAAAGTGCTTACTTTAT
TTGTGGGTGCGAATGACCTTTGTATTTGCTGTAAGCTTCCGAAAAGGACC
GACGCCATAGAGTATTCTGAAACATTTCGACGAATCCTCCTTGCAATTCG
GGATCGCTTTCCGCGGACTCTAGTCAATGTCGTAGAGATGTTTAATGTCT
CAGCCATTTACTGCGCTACAGAGAACAAGTCGTATTGCAAGGACGTCCAC
CGGCTCATTTTTCTGGAATGCGATTGTGCATTCAAAGGGTCAGAATCGGC
CTCCGAACCCTACAGAAAGCTTATGGATGAATTATCACAGGAATACAATA
AACAAATGAGAAGCGTGATCCGGGATCTATCGAAGGTCAAGAATGATACG
TGGGCAATCGCCCTTCACTCCTTTACTCGGGACCTTAACATCACCTCCTT
CCCTATGGAAATGATTTCGCACCGAGACACCACAATTCCCTCGCTGGACT
TGCAGCCCCTTTGCGCGGGAGAGGAGAGTGTGTTTTACCCCGGCTATCCT
CCGGACGAGGACGAGGAGGTCGGGATTGAGGAAGAAAGGATGGTGGGCTT
GATCAATACGGGCAAGATGCTGCGCGAGGCTTGA
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Synonyms
Publications