NO01G02400.1, NO01G02400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02400.1
Unique NameNO01G02400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1479
Alignment locationchr1:619635..621113 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:619635..621113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02400.1 vs.
Match: EWM29180.1 (sucrose transporter [Nannochloropsis gaditana])

HSP 1 Score: 701.4 bits (1809), Expect = 1.900e-198
Identity = 366/486 (75.31%), Postives = 422/486 (86.83%), Query Frame = 0 
Query:    7 SSSTIKSERAPLMPKVQASSVGASDVDSDAGDSRTPWCLAAQIYPTFAFLGVQMCWSVAYGYITPILVTFNLSIETVGIVWFFSSLASCMTVPLISAASDFSQNTWGRRRPFLGGFLLVGAGGLILLAYAESLGVWLGDTNEEQRYALSMAVIGLILGQVGLDGIQGMERGLCTDTLEADALQGVNSFFALQGSLGRLLGFGLGSINLAKAPGLSYLGSQTQILFLLSAGVLFVTTCGTLVTSVEKHFTPQLYELFNGSFVSSAKRAVFGMKSLPKAVRLAAVSNLLAWSAFALLFYYGSYFYGAYIYGGNPEDTGKPDSLYERGVQAASFAFLLMAVVASFTSLVLGSLAARVGLKRVWVASLVCAAAVFLGLFFLQPGNKDAALALFACLGLPLAASYQCPWSIVTVAVRRSENSALYCSLFRSISEVLPFALQGLLGSLLLSLFQGSAREVFVAASVLMAVAGVYTHICVLDVQDVEEYEEEM 493
            SS+T KSE  P +P +QAS + +++VDSD+ +SR+  C  AQ+YPTFAFLGVQMCWSVAY YITPILVTFNL+IETVG+VW  SSLASC TVPL+SAASDF+QN+WGRRRP++  FLLVG GGL+LLAYA+ +GVW GD   +QR ALSMAV+GLIL QVGLDGIQ MERGLCTDTL+ADALQGVN+FFALQGSLGR++GFGLG+ NL KAPGLSYLG Q QILFLLSA +LF+TT  TL+T+ EK F PQLYELFN S  SS KRA+FGMKSLPKAVRLAAVSNLLAWS+FALLFYYGSYFYG++I+GG+PEDTG  DS+YERGVQ+ASF FLLMAVV S  SL LG + A+VG+K +WV++L  AAA FLG FFL+PG++ AALAL ACLGLPLAASYQCPW+IVTVAVRRSENSALYCSLFRS+SEVLPFALQGL+GS LLS+FQGSAR VF AASVLMA A V+T+  VLDVQDVEEYEEE+
Sbjct:   10 SSTTGKSEVTPFLPPLQAS-MDSTEVDSDSEESRSVKCSPAQLYPTFAFLGVQMCWSVAYAYITPILVTFNLNIETVGLVWCMSSLASCATVPLLSAASDFTQNSWGRRRPYMAMFLLVGGGGLLLLAYADRIGVWFGDIGGQQRNALSMAVMGLILSQVGLDGIQCMERGLCTDTLDADALQGVNAFFALQGSLGRVVGFGLGAANLGKAPGLSYLGDQIQILFLLSAFLLFLTTSTTLLTAREKRFIPQLYELFNASVTSSGKRALFGMKSLPKAVRLAAVSNLLAWSSFALLFYYGSYFYGSFIFGGDPEDTGVIDSIYERGVQSASFGFLLMAVVGSMMSLGLGFVTAKVGIKTMWVSTLAFAAATFLGFFFLRPGDRGAALALSACLGLPLAASYQCPWAIVTVAVRRSENSALYCSLFRSLSEVLPFALQGLIGSALLSVFQGSARSVFAAASVLMAAAAVHTYFFVLDVQDVEEYEEEI 494
The following BLAST results are available for this feature:
BLAST of NO01G02400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29180.11.900e-19875.31sucrose transporter [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02400NO01G02400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02400.1NO01G02400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02400.1.cds1NO01G02400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02400.1 ID=NO01G02400.1|Name=NO01G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1479bp
ATGCCTTGGCGGTGGGATTCGAGCTCGACCATCAAAAGTGAGCGGGCACC
TCTGATGCCAAAGGTTCAAGCTTCCTCAGTGGGCGCAAGCGATGTCGACA
GTGATGCAGGGGACAGCCGCACTCCGTGGTGCTTGGCTGCGCAAATCTAC
CCAACGTTCGCGTTTCTGGGCGTTCAGATGTGTTGGTCTGTAGCTTACGG
ATATATCACGCCTATTCTCGTCACATTTAATCTCAGCATCGAAACGGTTG
GCATTGTGTGGTTCTTCTCCTCCTTGGCAAGCTGTATGACGGTACCCCTC
ATATCGGCGGCCAGCGACTTCTCCCAAAACACGTGGGGCCGACGGCGGCC
GTTTTTGGGAGGATTTTTACTAGTGGGGGCTGGCGGACTTATTCTTTTGG
CGTACGCCGAGTCGCTGGGAGTGTGGCTGGGAGATACAAACGAAGAGCAG
AGGTATGCGCTCAGCATGGCCGTCATAGGTTTGATCCTAGGGCAAGTGGG
GCTCGACGGGATACAAGGGATGGAACGGGGGCTTTGCACGGACACATTGG
AGGCGGATGCGTTGCAAGGTGTCAATTCCTTCTTTGCCTTGCAGGGCAGC
TTGGGAAGACTGTTGGGTTTTGGATTGGGATCTATCAACCTGGCCAAGGC
GCCTGGCCTCTCATACCTCGGTAGCCAAACCCAGATTCTCTTTCTTCTTT
CAGCCGGCGTCTTGTTTGTGACGACGTGCGGAACCTTGGTGACCTCAGTA
GAAAAGCACTTTACTCCTCAGCTTTATGAACTCTTCAATGGTAGTTTTGT
CTCCTCGGCCAAAAGGGCGGTGTTTGGAATGAAGTCCCTCCCGAAAGCCG
TGCGTCTCGCGGCAGTGTCTAACCTCCTGGCCTGGAGTGCCTTTGCCCTT
TTGTTTTACTATGGCTCTTACTTTTACGGCGCCTACATTTATGGAGGGAA
TCCAGAGGATACGGGTAAGCCCGATTCCTTGTATGAGCGCGGAGTACAAG
CAGCAAGTTTTGCATTCTTGCTGATGGCAGTGGTGGCCAGTTTCACATCG
CTGGTTTTGGGATCATTGGCGGCGAGAGTAGGTTTGAAACGGGTCTGGGT
AGCGTCGCTGGTATGTGCTGCGGCCGTGTTTCTGGGCCTGTTCTTCCTGC
AGCCGGGAAACAAGGATGCAGCCCTGGCACTCTTTGCCTGCTTAGGGCTG
CCACTGGCTGCGAGTTACCAATGTCCATGGTCAATCGTGACAGTGGCAGT
TCGACGCTCAGAAAACTCGGCTTTATACTGCAGCCTGTTTAGAAGCATCA
GCGAGGTGCTGCCATTCGCTCTTCAAGGGTTGCTGGGCTCGCTGCTGCTC
AGCCTCTTTCAAGGGAGTGCACGGGAGGTTTTTGTTGCGGCGTCGGTGCT
CATGGCCGTGGCTGGGGTCTACACGCATATATGTGTCCTAGATGTACAAG
ACGTGGAAGAGTACGAGGAAGAGATGTGA
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protein sequence of NO01G02400.1

>NO01G02400.1-protein ID=NO01G02400.1-protein|Name=NO01G02400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp
MPWRWDSSSTIKSERAPLMPKVQASSVGASDVDSDAGDSRTPWCLAAQIY
PTFAFLGVQMCWSVAYGYITPILVTFNLSIETVGIVWFFSSLASCMTVPL
ISAASDFSQNTWGRRRPFLGGFLLVGAGGLILLAYAESLGVWLGDTNEEQ
RYALSMAVIGLILGQVGLDGIQGMERGLCTDTLEADALQGVNSFFALQGS
LGRLLGFGLGSINLAKAPGLSYLGSQTQILFLLSAGVLFVTTCGTLVTSV
EKHFTPQLYELFNGSFVSSAKRAVFGMKSLPKAVRLAAVSNLLAWSAFAL
LFYYGSYFYGAYIYGGNPEDTGKPDSLYERGVQAASFAFLLMAVVASFTS
LVLGSLAARVGLKRVWVASLVCAAAVFLGLFFLQPGNKDAALALFACLGL
PLAASYQCPWSIVTVAVRRSENSALYCSLFRSISEVLPFALQGLLGSLLL
SLFQGSAREVFVAASVLMAVAGVYTHICVLDVQDVEEYEEEM*
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mRNA from alignment at chr1:619635..621113+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02400.1 ID=NO01G02400.1|Name=NO01G02400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1479bp|location=Sequence derived from alignment at chr1:619635..621113+ (Nannochloropsis oceanica)
ATGCCTTGGCGGTGGGATTCGAGCTCGACCATCAAAAGTGAGCGGGCACC
TCTGATGCCAAAGGTTCAAGCTTCCTCAGTGGGCGCAAGCGATGTCGACA
GTGATGCAGGGGACAGCCGCACTCCGTGGTGCTTGGCTGCGCAAATCTAC
CCAACGTTCGCGTTTCTGGGCGTTCAGATGTGTTGGTCTGTAGCTTACGG
ATATATCACGCCTATTCTCGTCACATTTAATCTCAGCATCGAAACGGTTG
GCATTGTGTGGTTCTTCTCCTCCTTGGCAAGCTGTATGACGGTACCCCTC
ATATCGGCGGCCAGCGACTTCTCCCAAAACACGTGGGGCCGACGGCGGCC
GTTTTTGGGAGGATTTTTACTAGTGGGGGCTGGCGGACTTATTCTTTTGG
CGTACGCCGAGTCGCTGGGAGTGTGGCTGGGAGATACAAACGAAGAGCAG
AGGTATGCGCTCAGCATGGCCGTCATAGGTTTGATCCTAGGGCAAGTGGG
GCTCGACGGGATACAAGGGATGGAACGGGGGCTTTGCACGGACACATTGG
AGGCGGATGCGTTGCAAGGTGTCAATTCCTTCTTTGCCTTGCAGGGCAGC
TTGGGAAGACTGTTGGGTTTTGGATTGGGATCTATCAACCTGGCCAAGGC
GCCTGGCCTCTCATACCTCGGTAGCCAAACCCAGATTCTCTTTCTTCTTT
CAGCCGGCGTCTTGTTTGTGACGACGTGCGGAACCTTGGTGACCTCAGTA
GAAAAGCACTTTACTCCTCAGCTTTATGAACTCTTCAATGGTAGTTTTGT
CTCCTCGGCCAAAAGGGCGGTGTTTGGAATGAAGTCCCTCCCGAAAGCCG
TGCGTCTCGCGGCAGTGTCTAACCTCCTGGCCTGGAGTGCCTTTGCCCTT
TTGTTTTACTATGGCTCTTACTTTTACGGCGCCTACATTTATGGAGGGAA
TCCAGAGGATACGGGTAAGCCCGATTCCTTGTATGAGCGCGGAGTACAAG
CAGCAAGTTTTGCATTCTTGCTGATGGCAGTGGTGGCCAGTTTCACATCG
CTGGTTTTGGGATCATTGGCGGCGAGAGTAGGTTTGAAACGGGTCTGGGT
AGCGTCGCTGGTATGTGCTGCGGCCGTGTTTCTGGGCCTGTTCTTCCTGC
AGCCGGGAAACAAGGATGCAGCCCTGGCACTCTTTGCCTGCTTAGGGCTG
CCACTGGCTGCGAGTTACCAATGTCCATGGTCAATCGTGACAGTGGCAGT
TCGACGCTCAGAAAACTCGGCTTTATACTGCAGCCTGTTTAGAAGCATCA
GCGAGGTGCTGCCATTCGCTCTTCAAGGGTTGCTGGGCTCGCTGCTGCTC
AGCCTCTTTCAAGGGAGTGCACGGGAGGTTTTTGTTGCGGCGTCGGTGCT
CATGGCCGTGGCTGGGGTCTACACGCATATATGTGTCCTAGATGTACAAG
ACGTGGAAGAGTACGAGGAAGAGATGTGA
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Coding sequence (CDS) from alignment at chr1:619635..621113+

>NO01G02400.1 ID=NO01G02400.1|Name=NO01G02400.1|organism=Nannochloropsis oceanica|type=CDS|length=1479bp|location=Sequence derived from alignment at chr1:619635..621113+ (Nannochloropsis oceanica)
ATGCCTTGGCGGTGGGATTCGAGCTCGACCATCAAAAGTGAGCGGGCACC
TCTGATGCCAAAGGTTCAAGCTTCCTCAGTGGGCGCAAGCGATGTCGACA
GTGATGCAGGGGACAGCCGCACTCCGTGGTGCTTGGCTGCGCAAATCTAC
CCAACGTTCGCGTTTCTGGGCGTTCAGATGTGTTGGTCTGTAGCTTACGG
ATATATCACGCCTATTCTCGTCACATTTAATCTCAGCATCGAAACGGTTG
GCATTGTGTGGTTCTTCTCCTCCTTGGCAAGCTGTATGACGGTACCCCTC
ATATCGGCGGCCAGCGACTTCTCCCAAAACACGTGGGGCCGACGGCGGCC
GTTTTTGGGAGGATTTTTACTAGTGGGGGCTGGCGGACTTATTCTTTTGG
CGTACGCCGAGTCGCTGGGAGTGTGGCTGGGAGATACAAACGAAGAGCAG
AGGTATGCGCTCAGCATGGCCGTCATAGGTTTGATCCTAGGGCAAGTGGG
GCTCGACGGGATACAAGGGATGGAACGGGGGCTTTGCACGGACACATTGG
AGGCGGATGCGTTGCAAGGTGTCAATTCCTTCTTTGCCTTGCAGGGCAGC
TTGGGAAGACTGTTGGGTTTTGGATTGGGATCTATCAACCTGGCCAAGGC
GCCTGGCCTCTCATACCTCGGTAGCCAAACCCAGATTCTCTTTCTTCTTT
CAGCCGGCGTCTTGTTTGTGACGACGTGCGGAACCTTGGTGACCTCAGTA
GAAAAGCACTTTACTCCTCAGCTTTATGAACTCTTCAATGGTAGTTTTGT
CTCCTCGGCCAAAAGGGCGGTGTTTGGAATGAAGTCCCTCCCGAAAGCCG
TGCGTCTCGCGGCAGTGTCTAACCTCCTGGCCTGGAGTGCCTTTGCCCTT
TTGTTTTACTATGGCTCTTACTTTTACGGCGCCTACATTTATGGAGGGAA
TCCAGAGGATACGGGTAAGCCCGATTCCTTGTATGAGCGCGGAGTACAAG
CAGCAAGTTTTGCATTCTTGCTGATGGCAGTGGTGGCCAGTTTCACATCG
CTGGTTTTGGGATCATTGGCGGCGAGAGTAGGTTTGAAACGGGTCTGGGT
AGCGTCGCTGGTATGTGCTGCGGCCGTGTTTCTGGGCCTGTTCTTCCTGC
AGCCGGGAAACAAGGATGCAGCCCTGGCACTCTTTGCCTGCTTAGGGCTG
CCACTGGCTGCGAGTTACCAATGTCCATGGTCAATCGTGACAGTGGCAGT
TCGACGCTCAGAAAACTCGGCTTTATACTGCAGCCTGTTTAGAAGCATCA
GCGAGGTGCTGCCATTCGCTCTTCAAGGGTTGCTGGGCTCGCTGCTGCTC
AGCCTCTTTCAAGGGAGTGCACGGGAGGTTTTTGTTGCGGCGTCGGTGCT
CATGGCCGTGGCTGGGGTCTACACGCATATATGTGTCCTAGATGTACAAG
ACGTGGAAGAGTACGAGGAAGAGATGTGA
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Synonyms
Publications