NO01G02320.1, NO01G02320.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02320.1
Unique NameNO01G02320.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1023
Alignment locationchr1:601813..603085 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:601813..603085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02320.1 vs.
Match: XP_008873920.1 (hypothetical protein H310_09595 [Aphanomyces invadans]; ETV97711.1 hypothetical protein H310_09595 [Aphanomyces invadans])

HSP 1 Score: 236.5 bits (602), Expect = 6.600e-59
Identity = 111/147 (75.51%), Postives = 122/147 (82.99%), Query Frame = 0 
Query:   35 ERTYIMIKPDGVQRGLVGEIIARFERKGFKLVALKSLNASKDLLNEHYQDLADKPFFAGLVTYMSSGPVIAMVWEGLNAVKEGRKMLGATKPSDSAPGTIRGDFALDVGRNICHGSDSVESAQREIGLWFGEGLAEWNANNYSWVYE 182
            ERTYIMIKPDGVQR LVGEII RFE+KGF+LVALK +   K  L  HY DLA K FF GL+ YM+SGPV+AMVW+G N VKEGRKMLGATKPSDSAPGTIRGDFA++VGRNICHGSDSVESA  EI LWF EG+ EWNA   +WVYE
Sbjct:    3 ERTYIMIKPDGVQRNLVGEIIKRFEQKGFQLVALKMVRPGKAHLEAHYADLAGKGFFNGLIEYMNSGPVVAMVWQGFNVVKEGRKMLGATKPSDSAPGTIRGDFAIEVGRNICHGSDSVESANHEIALWFPEGITEWNATRNAWVYE 149
The following BLAST results are available for this feature:
BLAST of NO01G02320.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008873920.16.600e-5975.51hypothetical protein H310_09595 [Aphanomyces invad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02320NO01G02320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02320.1NO01G02320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02320.1.cds1NO01G02320.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02320.1.cds2NO01G02320.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02320.1.cds3NO01G02320.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02320.1 ID=NO01G02320.1|Name=NO01G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1023bp
TGCCACTGACTTCACTGTTCTCTCACCACATGCGACTCGCCCTGGCCACA
TAAACTGATTCTTCCTGTCTCCTGGGCAGTTTCTTCAATTTCTACCGCGC
TTGTCGCGTACTCGCTTTACGTCTACCATGCTCTGTAGACAGACATTAAG
TTCACCCTCTATGCGGCTGACAGGGACCATATACAGTCCACATGATCAGA
CCGGCTGTCCGCTCAAACACTGACCCAAACGCGTTGCCCCACCCCGCCCT
CTCGATGCACAGGCACACAGGCATTAAGCACACCATGAGCACCGAACGCA
CGTACATTATGATAAAACCCGATGGTGTTCAACGGGGCTTGGTCGGAGAA
ATCATCGCGCGCTTCGAGCGCAAGGGTTTCAAGCTTGTGGCGCTCAAGTC
GCTCAATGCTTCCAAGGACCTTTTGAATGAGCACTACCAGGATTTGGCTG
ACAAGCCCTTTTTTGCCGGTCTCGTCACTTACATGAGCTCGGGCCCTGTC
ATCGCCATGGTCTGGGAGGGCCTGAACGCTGTCAAGGAGGGCCGCAAGAT
GCTTGGTGCCACCAAGCCGTCCGACAGCGCCCCTGGCACGATCCGCGGCG
ACTTTGCCCTTGACGTGGGCCGCAATATCTGTCACGGCTCTGACTCCGTC
GAGTCTGCTCAGCGAGAGATCGGCCTCTGGTTTGGCGAGGGCTTGGCTGA
ATGGAATGCAAACAACTACTCTTGGGTGTACGAGAAGTAAAGTGGCCGGA
CCTTTCAATCTCGTCACTGTCGTCGACGACGTAATCCGCAGCCGGTTCTC
AGGAAAGAACTGAGTAGAAACTTAAGAGCCCACAATGGAGCGTGTCCTCT
GGAATGAAAGCACGGGGAAGAGGGAGTTGGAGGTTTGTTTGACTGGGTTA
AAGCTTAAGGTCGGAGTGAAAACGGAAGACGGCAACTCGCTCCTAAAGCA
GGGAGATGATAGGCGCGGTGAGGGACTAAGAAAACTCGATTTGAAAACAA
GGCATGACAGTATCCCGAGCCAG
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protein sequence of NO01G02320.1

>NO01G02320.1-protein ID=NO01G02320.1-protein|Name=NO01G02320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MIRPAVRSNTDPNALPHPALSMHRHTGIKHTMSTERTYIMIKPDGVQRGL
VGEIIARFERKGFKLVALKSLNASKDLLNEHYQDLADKPFFAGLVTYMSS
GPVIAMVWEGLNAVKEGRKMLGATKPSDSAPGTIRGDFALDVGRNICHGS
DSVESAQREIGLWFGEGLAEWNANNYSWVYEK*
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mRNA from alignment at chr1:601813..603085-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02320.1 ID=NO01G02320.1|Name=NO01G02320.1|organism=Nannochloropsis oceanica|type=mRNA|length=1273bp|location=Sequence derived from alignment at chr1:601813..603085- (Nannochloropsis oceanica)
TGCCACTGACTTCACTGTTCTCTCACCACATGCGACTCGCCCTGGCCACA
TAAACTGATTCTTCCTGTCTCCTGGGCAGTTTCTTCAATTTCTACCGCGC
TTGTCGCGTACTCGCTTTACGTCTACCATGCTCTGTAGACAGACATTAAG
TTCACCCTCTATGCGGCTGACAGGGACCATATACAGTCCACATGATCAGA
CCGGCTGTCCGCTCAAACACTGACCCAAACGCGTTGCCCCACCCCGCCCT
CTCGATGCACAGGCACACAGGCATTAAGCACACCATGAGCACCGAACGCA
CGTACATTATGATAAAACCCGATGGTGTTCAACGGGGCTTGGTCGGAGAA
ATCATCGCGCGCTTCGAGCGCAAGGGTTTCAAGCTTGTGGCGCTCAAGTC
GCTCAATGCTTCCAAGGACCTTTTGAATGAGCACTACCAGGATTTGGCTG
ACAAGCCCTTTTTTGCCGGTCTCGTCACTTACATGAGCTCGGGCCCTGTC
ATCGCCATGGTCTGGGAGGGCCTGAACGCTGTCAAGGAGGGCCGCAAGGT
ATGCATCGGGTCATTCTCTCTTCAGTTCTCAGCTTTCGATCCTTATCACT
CTTGCTCTATTTTGATATATCCTCTTTTGCTCTCATCACTGTTTGATTCC
GCCTTGGCTGATCCCTCTTCCGTTCTCATCTTTCACTCAGATGCTTGGTG
CCACCAAGCCGTCCGACAGCGCCCCTGGCACGATCCGCGGCGACTTTGCC
CTTGACGTAAGTGTGCTTTGATATCTTCGATTGTCTGTGTATCGTCCCAT
CTTGATACATTTTGTGCAAACCTCTCACTTTACAACCGAACGTATTTTTT
CGACATCCCTGTAGGTGGGCCGCAATATCTGTCACGGCTCTGACTCCGTC
GAGTCTGCTCAGCGAGAGATCGGCCTCTGGTTTGGCGAGGGCTTGGCTGA
ATGGAATGCAAACAACTACTCTTGGGTGTACGAGAAGTAAAGTGGCCGGA
CCTTTCAATCTCGTCACTGTCGTCGACGACGTAATCCGCAGCCGGTTCTC
AGGAAAGAACTGAGTAGAAACTTAAGAGCCCACAATGGAGCGTGTCCTCT
GGAATGAAAGCACGGGGAAGAGGGAGTTGGAGGTTTGTTTGACTGGGTTA
AAGCTTAAGGTCGGAGTGAAAACGGAAGACGGCAACTCGCTCCTAAAGCA
GGGAGATGATAGGCGCGGTGAGGGACTAAGAAAACTCGATTTGAAAACAA
GGCATGACAGTATCCCGAGCCAG
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Coding sequence (CDS) from alignment at chr1:601813..603085-

>NO01G02320.1 ID=NO01G02320.1|Name=NO01G02320.1|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at chr1:601813..603085- (Nannochloropsis oceanica)
ATGATCAGACCGGCTGTCCGCTCAAACACTGACCCAAACGCGTTGCCCCA
CCCCGCCCTCTCGATGCACAGGCACACAGGCATTAAGCACACCATGAGCA
CCGAACGCACGTACATTATGATAAAACCCGATGGTGTTCAACGGGGCTTG
GTCGGAGAAATCATCGCGCGCTTCGAGCGCAAGGGTTTCAAGCTTGTGGC
GCTCAAGTCGCTCAATGCTTCCAAGGACCTTTTGAATGAGCACTACCAGG
ATTTGGCTGACAAGCCCTTTTTTGCCGGTCTCGTCACTTACATGAGCTCG
GGCCCTGTCATCGCCATGGTCTGGGAGGGCCTGAACGCTGTCAAGGAGGG
CCGCAAGATGCTTGGTGCCACCAAGCCGTCCGACAGCGCCCCTGGCACGA
TCCGCGGCGACTTTGCCCTTGACGTGGGCCGCAATATCTGTCACGGCTCT
GACTCCGTCGAGTCTGCTCAGCGAGAGATCGGCCTCTGGTTTGGCGAGGG
CTTGGCTGAATGGAATGCAAACAACTACTCTTGGGTGTACGAGAAGTAA
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Synonyms
Publications