NO01G02310.1, NO01G02310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02310.1
Unique NameNO01G02310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1455
Alignment locationchr1:600106..601730 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:600106..601730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02310.1 vs.
Match: EWM29202.1 (diaminopimelate decarboxylase [Nannochloropsis gaditana])

HSP 1 Score: 753.8 bits (1945), Expect = 3.200e-214
Identity = 376/480 (78.33%), Postives = 419/480 (87.29%), Query Frame = 0 
Query:    7 MRALLLLVVSACLATAFLQPHFSSFEGRSIHSRSIRRGG--LIVAAADGVYGESSEELEKLRFLTPELVEAVANEFGTPTYVYDMSTLTASAKQALAFPNAFGLTVRYAMKASPNAAILKLFNSLGLHVDASSGYEIKRAMRAGVPPSHISLSSQELPSDFDEYVAQGVQINACSISQLKRFGQKCPGGKVGLRFNPGVGSGGTGKTNVGGPSSAFGIWHELLPEVKAVVATHDLEVVRIHTHIGSGSDPAVWQNVATLSLDLVREFPKVMTLNLGGGYKVGRMSYEASTDLLKIGAPVQKKFEDFAQETGRKLHLEVEPGTFLVANAGALVCAIQDKTTTSAHTFLKLDAGMTEVLRPSLYGAQHPLIVIPKDKTRAEQTASYVVVGHCCESGDLLTPAPGEADTIAERKMTVADIGDLVVVEGSGAYCAGMSTKNYNSFPEAPEVMYASGGIFHLIRRRQTLDQTLQNELDLPASALS 485
            M+A+L  V S  +  AFL P +      S    +  RG   LIV+AADG  G +S E E LRFL P++VE +AN++GTPTY+YDM+TL ASAK AL+FPNAFGLTVRYAMKASPNAAILKLFNSLGLH+DASSGYEI+RAMRAGVP SHISLSSQELPSDFD +V  GV INACSISQL+RFG++C GGK+GLRFNPGVGSGGTGKTNVGGPSSAFGIWHELLPEVK VVA H L+VVR+HTHIGSGSDPAVWQNVA LSLDLVREFP+V TLNLGGGYKVGRM  E STDL KIGAPV++KFEDFA ETGRKLHLE+EPGTFLVANAGALVC +QDKT+TSAHTFLKLDAGMTEVLRPSLYGAQHPL+VIPKD+TRA++ A YVVVGHCCESGDLLTPAPGEADT++ER++T A+IGDL+VVEGSGAYCAGMSTKNYNSFPEAPEVM A  G  +LIRRRQTL+Q LQNELDLP SAL+
Sbjct:    1 MKAVLGCVSSLYVTAAFLGPQYRQVPSFSNGLNTWMRGRRQLIVSAADGTSGSTSLERETLRFLNPDIVENLANQYGTPTYIYDMATLKASAKSALSFPNAFGLTVRYAMKASPNAAILKLFNSLGLHIDASSGYEIQRAMRAGVPASHISLSSQELPSDFDSFVDLGVHINACSISQLQRFGERCSGGKIGLRFNPGVGSGGTGKTNVGGPSSAFGIWHELLPEVKRVVAEHKLQVVRVHTHIGSGSDPAVWQNVAALSLDLVREFPQVETLNLGGGYKVGRMRQEQSTDLAKIGAPVKEKFEDFALETGRKLHLEIEPGTFLVANAGALVCRVQDKTSTSAHTFLKLDAGMTEVLRPSLYGAQHPLVVIPKDRTRADRAAYYVVVGHCCESGDLLTPAPGEADTVSERELTSAEIGDLMVVEGSGAYCAGMSTKNYNSFPEAPEVMLAPDGALYLIRRRQTLEQALQNELDLPTSALA 480
The following BLAST results are available for this feature:
BLAST of NO01G02310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29202.13.200e-21478.33diaminopimelate decarboxylase [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02310NO01G02310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02310.1NO01G02310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02310.1.cds1NO01G02310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02310.1.cds2NO01G02310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02310.1 ID=NO01G02310.1|Name=NO01G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1455bp
ATGGCAGCGCCCACCAGCATGCGGGCCCTTTTGCTTTTGGTGGTCTCCGC
GTGCTTGGCCACCGCTTTTTTGCAGCCACACTTCTCGTCCTTCGAGGGAC
GCAGCATCCACAGCCGCAGCATCAGGAGGGGAGGGTTAATCGTGGCGGCT
GCAGACGGTGTCTATGGAGAGTCATCAGAAGAGCTAGAAAAGCTGCGTTT
TCTGACTCCCGAGCTAGTTGAGGCAGTTGCGAATGAATTTGGCACTCCCA
CCTACGTGTACGACATGAGCACGCTCACCGCTAGCGCCAAGCAGGCCCTG
GCGTTTCCCAACGCGTTTGGCCTGACAGTGCGGTACGCGATGAAGGCCAG
CCCTAACGCCGCCATCCTGAAGCTATTTAATAGCCTGGGTTTGCATGTGG
ATGCTTCGTCGGGCTATGAGATCAAGCGGGCCATGCGAGCTGGCGTGCCA
CCGTCGCACATCAGTTTGTCGTCGCAAGAGCTGCCGTCTGATTTTGACGA
GTACGTGGCGCAGGGCGTGCAGATCAATGCCTGCTCCATCTCACAGCTGA
AGCGTTTCGGGCAAAAGTGTCCAGGAGGGAAGGTGGGCCTACGCTTCAAC
CCCGGCGTGGGCTCAGGCGGCACCGGCAAGACGAATGTGGGGGGTCCTTC
GTCTGCCTTCGGGATATGGCACGAGTTGCTCCCCGAGGTCAAGGCGGTAG
TGGCCACGCACGACCTAGAGGTGGTACGCATCCATACCCACATTGGCTCG
GGCTCTGATCCGGCCGTGTGGCAGAATGTGGCAACGTTGTCCTTGGATCT
GGTGCGGGAGTTTCCCAAGGTGATGACTCTGAATCTGGGGGGGGGCTACA
AGGTAGGTCGCATGAGCTATGAGGCTTCGACAGACTTGCTTAAGATTGGC
GCGCCCGTGCAGAAGAAGTTCGAGGACTTTGCACAAGAGACGGGCCGAAA
GCTCCATTTGGAAGTGGAGCCGGGCACATTTTTGGTGGCCAATGCCGGGG
CTTTGGTGTGTGCTATTCAGGACAAGACTACCACCAGCGCGCACACTTTC
CTGAAGTTGGACGCGGGTATGACCGAGGTCCTGCGCCCTTCCTTGTATGG
GGCGCAACACCCGTTGATTGTGATTCCCAAGGACAAGACCCGGGCTGAGC
AGACAGCATCGTATGTGGTGGTGGGCCACTGCTGCGAGTCGGGGGATTTG
CTCACGCCTGCGCCAGGAGAGGCCGACACGATTGCCGAGCGGAAGATGAC
GGTGGCTGACATTGGGGACTTGGTGGTGGTGGAAGGCTCGGGAGCCTACT
GTGCGGGAATGAGCACCAAAAACTATAACTCCTTTCCGGAAGCTCCCGAG
GTGATGTATGCGTCTGGTGGCATTTTCCACCTCATCCGCCGGCGGCAGAC
ACTGGATCAGACCCTTCAAAATGAGCTTGATTTGCCTGCCAGCGCACTTT
CTTGA
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protein sequence of NO01G02310.1

>NO01G02310.1-protein ID=NO01G02310.1-protein|Name=NO01G02310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MAAPTSMRALLLLVVSACLATAFLQPHFSSFEGRSIHSRSIRRGGLIVAA
ADGVYGESSEELEKLRFLTPELVEAVANEFGTPTYVYDMSTLTASAKQAL
AFPNAFGLTVRYAMKASPNAAILKLFNSLGLHVDASSGYEIKRAMRAGVP
PSHISLSSQELPSDFDEYVAQGVQINACSISQLKRFGQKCPGGKVGLRFN
PGVGSGGTGKTNVGGPSSAFGIWHELLPEVKAVVATHDLEVVRIHTHIGS
GSDPAVWQNVATLSLDLVREFPKVMTLNLGGGYKVGRMSYEASTDLLKIG
APVQKKFEDFAQETGRKLHLEVEPGTFLVANAGALVCAIQDKTTTSAHTF
LKLDAGMTEVLRPSLYGAQHPLIVIPKDKTRAEQTASYVVVGHCCESGDL
LTPAPGEADTIAERKMTVADIGDLVVVEGSGAYCAGMSTKNYNSFPEAPE
VMYASGGIFHLIRRRQTLDQTLQNELDLPASALS*
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mRNA from alignment at chr1:600106..601730+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02310.1 ID=NO01G02310.1|Name=NO01G02310.1|organism=Nannochloropsis oceanica|type=mRNA|length=1625bp|location=Sequence derived from alignment at chr1:600106..601730+ (Nannochloropsis oceanica)
ATGGCAGGTGAGGACTGAATGTTTAGATGGCCGTCCTTTGCTTTGCCGTC
CTTTGCTTTTCTCGCGCGCTGCATAATTTCAGAGTGATCTTGCGTGGCGA
TTGCGCCGACCTCCTAAATAAAGGACACTTTTTTACCTTAGCTCACATCT
TAACCCCTACCCTGGACACAATCACAGCGCCCACCAGCATGCGGGCCCTT
TTGCTTTTGGTGGTCTCCGCGTGCTTGGCCACCGCTTTTTTGCAGCCACA
CTTCTCGTCCTTCGAGGGACGCAGCATCCACAGCCGCAGCATCAGGAGGG
GAGGGTTAATCGTGGCGGCTGCAGACGGTGTCTATGGAGAGTCATCAGAA
GAGCTAGAAAAGCTGCGTTTTCTGACTCCCGAGCTAGTTGAGGCAGTTGC
GAATGAATTTGGCACTCCCACCTACGTGTACGACATGAGCACGCTCACCG
CTAGCGCCAAGCAGGCCCTGGCGTTTCCCAACGCGTTTGGCCTGACAGTG
CGGTACGCGATGAAGGCCAGCCCTAACGCCGCCATCCTGAAGCTATTTAA
TAGCCTGGGTTTGCATGTGGATGCTTCGTCGGGCTATGAGATCAAGCGGG
CCATGCGAGCTGGCGTGCCACCGTCGCACATCAGTTTGTCGTCGCAAGAG
CTGCCGTCTGATTTTGACGAGTACGTGGCGCAGGGCGTGCAGATCAATGC
CTGCTCCATCTCACAGCTGAAGCGTTTCGGGCAAAAGTGTCCAGGAGGGA
AGGTGGGCCTACGCTTCAACCCCGGCGTGGGCTCAGGCGGCACCGGCAAG
ACGAATGTGGGGGGTCCTTCGTCTGCCTTCGGGATATGGCACGAGTTGCT
CCCCGAGGTCAAGGCGGTAGTGGCCACGCACGACCTAGAGGTGGTACGCA
TCCATACCCACATTGGCTCGGGCTCTGATCCGGCCGTGTGGCAGAATGTG
GCAACGTTGTCCTTGGATCTGGTGCGGGAGTTTCCCAAGGTGATGACTCT
GAATCTGGGGGGGGGCTACAAGGTAGGTCGCATGAGCTATGAGGCTTCGA
CAGACTTGCTTAAGATTGGCGCGCCCGTGCAGAAGAAGTTCGAGGACTTT
GCACAAGAGACGGGCCGAAAGCTCCATTTGGAAGTGGAGCCGGGCACATT
TTTGGTGGCCAATGCCGGGGCTTTGGTGTGTGCTATTCAGGACAAGACTA
CCACCAGCGCGCACACTTTCCTGAAGTTGGACGCGGGTATGACCGAGGTC
CTGCGCCCTTCCTTGTATGGGGCGCAACACCCGTTGATTGTGATTCCCAA
GGACAAGACCCGGGCTGAGCAGACAGCATCGTATGTGGTGGTGGGCCACT
GCTGCGAGTCGGGGGATTTGCTCACGCCTGCGCCAGGAGAGGCCGACACG
ATTGCCGAGCGGAAGATGACGGTGGCTGACATTGGGGACTTGGTGGTGGT
GGAAGGCTCGGGAGCCTACTGTGCGGGAATGAGCACCAAAAACTATAACT
CCTTTCCGGAAGCTCCCGAGGTGATGTATGCGTCTGGTGGCATTTTCCAC
CTCATCCGCCGGCGGCAGACACTGGATCAGACCCTTCAAAATGAGCTTGA
TTTGCCTGCCAGCGCACTTTCTTGA
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Coding sequence (CDS) from alignment at chr1:600106..601730+

>NO01G02310.1 ID=NO01G02310.1|Name=NO01G02310.1|organism=Nannochloropsis oceanica|type=CDS|length=1455bp|location=Sequence derived from alignment at chr1:600106..601730+ (Nannochloropsis oceanica)
ATGGCAGCGCCCACCAGCATGCGGGCCCTTTTGCTTTTGGTGGTCTCCGC
GTGCTTGGCCACCGCTTTTTTGCAGCCACACTTCTCGTCCTTCGAGGGAC
GCAGCATCCACAGCCGCAGCATCAGGAGGGGAGGGTTAATCGTGGCGGCT
GCAGACGGTGTCTATGGAGAGTCATCAGAAGAGCTAGAAAAGCTGCGTTT
TCTGACTCCCGAGCTAGTTGAGGCAGTTGCGAATGAATTTGGCACTCCCA
CCTACGTGTACGACATGAGCACGCTCACCGCTAGCGCCAAGCAGGCCCTG
GCGTTTCCCAACGCGTTTGGCCTGACAGTGCGGTACGCGATGAAGGCCAG
CCCTAACGCCGCCATCCTGAAGCTATTTAATAGCCTGGGTTTGCATGTGG
ATGCTTCGTCGGGCTATGAGATCAAGCGGGCCATGCGAGCTGGCGTGCCA
CCGTCGCACATCAGTTTGTCGTCGCAAGAGCTGCCGTCTGATTTTGACGA
GTACGTGGCGCAGGGCGTGCAGATCAATGCCTGCTCCATCTCACAGCTGA
AGCGTTTCGGGCAAAAGTGTCCAGGAGGGAAGGTGGGCCTACGCTTCAAC
CCCGGCGTGGGCTCAGGCGGCACCGGCAAGACGAATGTGGGGGGTCCTTC
GTCTGCCTTCGGGATATGGCACGAGTTGCTCCCCGAGGTCAAGGCGGTAG
TGGCCACGCACGACCTAGAGGTGGTACGCATCCATACCCACATTGGCTCG
GGCTCTGATCCGGCCGTGTGGCAGAATGTGGCAACGTTGTCCTTGGATCT
GGTGCGGGAGTTTCCCAAGGTGATGACTCTGAATCTGGGGGGGGGCTACA
AGGTAGGTCGCATGAGCTATGAGGCTTCGACAGACTTGCTTAAGATTGGC
GCGCCCGTGCAGAAGAAGTTCGAGGACTTTGCACAAGAGACGGGCCGAAA
GCTCCATTTGGAAGTGGAGCCGGGCACATTTTTGGTGGCCAATGCCGGGG
CTTTGGTGTGTGCTATTCAGGACAAGACTACCACCAGCGCGCACACTTTC
CTGAAGTTGGACGCGGGTATGACCGAGGTCCTGCGCCCTTCCTTGTATGG
GGCGCAACACCCGTTGATTGTGATTCCCAAGGACAAGACCCGGGCTGAGC
AGACAGCATCGTATGTGGTGGTGGGCCACTGCTGCGAGTCGGGGGATTTG
CTCACGCCTGCGCCAGGAGAGGCCGACACGATTGCCGAGCGGAAGATGAC
GGTGGCTGACATTGGGGACTTGGTGGTGGTGGAAGGCTCGGGAGCCTACT
GTGCGGGAATGAGCACCAAAAACTATAACTCCTTTCCGGAAGCTCCCGAG
GTGATGTATGCGTCTGGTGGCATTTTCCACCTCATCCGCCGGCGGCAGAC
ACTGGATCAGACCCTTCAAAATGAGCTTGATTTGCCTGCCAGCGCACTTT
CTTGA
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Synonyms
Publications