NO01G02260.1, NO01G02260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02260.1
Unique NameNO01G02260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1845
Alignment locationchr1:587397..589241 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:587397..589241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02260.1 vs.
Match: EWM29220.1 (ectonucleoside triphosphate diphosphohydrolase 4 [Nannochloropsis gaditana])

HSP 1 Score: 939.5 bits (2427), Expect = 5.300e-270
Identity = 472/595 (79.33%), Postives = 519/595 (87.23%), Query Frame = 0 
Query:   20 FLVALLLVIVEAQQEQPPSTPFQPNMPPPPPPLAPPFPSPAPPPSSTQVGTTKPTTMKITWPTQHGLIIDAGSTGSRMHVYQWDARRFETVPPPFSYPLTSNRWTDRLAPGISAFADSPEDVGSSLDPLISFAKDVLAGKEHQFQYFPIYLKATGGMRQLPTKQREAIVSEVRRYMMNETLCPFYFEHDFARVVSGEEEGVYGWTAINFLLGKLLPASTGTGTADANSSVGALDLGGASTQISFFVPNQDILANMFKLQIGAQKHWNVYVHSFLYFGINSARDRLHTTLTDAADANKDKTKKSEKGSSSNGSIYSNKMVPVGSLRVTNPCLPDGYEEVFRDRGKNYVVEGTAGSFSSCMTQVVPLLRKDLNSWCDFAHNNQCSFAGVYQPDLPPAPGNFGEFYGFGTFKDIWKMLDMPDVKANMTVYKERTESLCAMDWRQLQHMNQKKKKKKREQSLPFLAHYCFVAAFGYALLTEGYGFEASRNLTVVNKIDGLKVTWALGAMLYEINALPWEYVKPQTWVTAFIGSFLLNILLFAGVIFFLRKSHLSAAAIINRKRDISSSVSGFSIDRSANGRPQHSRRQSYQSIPTSAVV 615
            F + LL  +  AQQ QPPSTP  P  PPPPPP        + P  +T+   ++ T MKITWPTQHGLIIDAGSTGSRMHVYQWDARRF+TVPPPFS+PLTSNRWT+RLAPGISAFAD P++VG+SLD LISFA++VLAGKEHQF+YFPIYLKATGGMRQL   +REAI+ EVR+YMMN+T CPFYFEHDFARVVSGEEEG+YGWTAINFLLGKLLPAS GTGT DANSSVGALDLGGAS QISFFVP+QDILANMFKLQIGAQKHWNVYVHSFLYFGINSARDRLH TLT+ A ANKD+T K ++ + S      N +VP GSLRVTNPCLP GYEE FR +GK+YVVEG  GSFS CM +VVPLLRKDLNSWC+FAHN+QCSFAGVYQPDLPPAPGNFGEFYGFGTFKDIWKML MPDVKANM+VYKERTE++CA+DW  LQHMN++KKKKKRE+SLP+LAHYCFVAAFGYALLTEGYGFEASRNLTVV+KIDGLKVTWALGAMLYEINALPWEY KP TW+TAFIGSFLLNILLFAGVIFFLRKSHLSAAAIINRKR ISS+  G S DRS++G    S R SYQSIPTS+ V
Sbjct:   67 FAMLLLSTVASAQQAQPPSTPINPPDPPPPPP------HTSSPALNTEA--SRKTNMKITWPTQHGLIIDAGSTGSRMHVYQWDARRFDTVPPPFSFPLTSNRWTNRLAPGISAFADCPQNVGTSLDSLISFAREVLAGKEHQFKYFPIYLKATGGMRQLSPSKREAIIDEVRKYMMNKTTCPFYFEHDFARVVSGEEEGIYGWTAINFLLGKLLPASAGTGTVDANSSVGALDLGGASAQISFFVPDQDILANMFKLQIGAQKHWNVYVHSFLYFGINSARDRLHDTLTEEAQANKDRTGKKKQVTDS-----MNAVVPSGSLRVTNPCLPKGYEESFRHQGKDYVVEGATGSFSLCMDRVVPLLRKDLNSWCNFAHNHQCSFAGVYQPDLPPAPGNFGEFYGFGTFKDIWKMLAMPDVKANMSVYKERTEAMCALDWDALQHMNKQKKKKKREKSLPYLAHYCFVAAFGYALLTEGYGFEASRNLTVVSKIDGLKVTWALGAMLYEINALPWEYAKPPTWITAFIGSFLLNILLFAGVIFFLRKSHLSAAAIINRKRGISSTGLG-SSDRSSDGIGGVS-RSSYQSIPTSSQV 646
The following BLAST results are available for this feature:
BLAST of NO01G02260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29220.15.300e-27079.33ectonucleoside triphosphate diphosphohydrolase 4 [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02260NO01G02260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02260.1NO01G02260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02260.1.cds1NO01G02260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02260.1 ID=NO01G02260.1|Name=NO01G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1845bp
ATGGTACACGAATCTGTATTCGTGAGCATTCGACCGATGCAGCAGGCACG
ACGGCACTTCCTGGTGGCATTGCTGCTAGTCATCGTAGAAGCCCAGCAAG
AGCAGCCCCCGTCGACGCCTTTCCAGCCCAACATGCCTCCGCCGCCCCCT
CCTCTAGCTCCTCCATTTCCATCCCCGGCACCCCCGCCTTCCTCCACTCA
AGTCGGTACAACCAAGCCGACAACAATGAAGATTACCTGGCCGACGCAGC
ACGGACTGATCATTGACGCTGGCAGCACAGGGAGCCGCATGCACGTATAT
CAATGGGATGCCCGGCGCTTTGAAACCGTGCCCCCTCCATTTAGCTATCC
TCTCACCAGCAACAGATGGACGGATCGGCTCGCCCCCGGCATCTCCGCGT
TTGCCGACAGCCCCGAGGACGTGGGTTCGTCTTTGGACCCGCTTATATCC
TTTGCCAAAGATGTCCTGGCGGGGAAGGAGCATCAGTTCCAGTATTTCCC
CATTTATCTCAAGGCGACGGGGGGCATGCGTCAATTACCTACCAAGCAGC
GAGAGGCCATCGTTTCGGAAGTCCGGCGATACATGATGAACGAAACGCTG
TGTCCCTTCTACTTCGAACACGACTTTGCCCGTGTTGTGTCGGGGGAGGA
AGAAGGCGTTTACGGATGGACAGCCATCAACTTTCTGTTGGGGAAGCTGC
TGCCGGCAAGTACGGGAACGGGAACGGCTGACGCCAACTCGTCCGTGGGT
GCACTAGATCTGGGAGGCGCCTCCACGCAGATTTCGTTTTTTGTACCTAA
TCAGGATATCCTGGCGAACATGTTCAAGCTGCAGATTGGCGCCCAGAAGC
ATTGGAACGTCTATGTTCACTCCTTCCTGTACTTCGGGATCAACTCGGCC
CGGGACAGGCTGCACACCACCTTGACGGACGCGGCAGACGCCAACAAGGA
CAAGACGAAGAAGAGTGAGAAGGGCAGCAGCAGCAATGGTAGCATATATA
GCAACAAGATGGTGCCTGTGGGGTCCCTGAGGGTTACAAACCCGTGCTTG
CCTGATGGGTACGAGGAGGTGTTCAGGGACAGAGGGAAAAACTATGTCGT
AGAGGGGACGGCCGGCTCCTTCAGTAGCTGCATGACGCAGGTGGTGCCGC
TCCTGCGAAAGGATCTTAATTCTTGGTGTGACTTTGCTCACAACAATCAA
TGCTCGTTTGCTGGGGTGTACCAACCCGATCTTCCCCCCGCACCTGGAAA
TTTCGGAGAGTTTTACGGGTTCGGCACCTTTAAAGATATTTGGAAGATGC
TGGACATGCCGGACGTCAAGGCCAACATGACAGTGTACAAGGAGCGGACC
GAGAGTTTGTGTGCCATGGATTGGCGGCAGCTGCAGCATATGAACCAGAA
GAAGAAGAAGAAGAAGCGGGAGCAGAGCTTGCCCTTCTTAGCGCATTACT
GCTTCGTGGCCGCGTTTGGGTACGCGCTGCTCACGGAGGGTTATGGTTTT
GAGGCATCGCGGAACCTGACAGTGGTGAACAAGATTGACGGGCTCAAGGT
AACGTGGGCGCTTGGGGCCATGCTGTATGAGATCAACGCTTTACCGTGGG
AGTATGTCAAACCCCAGACGTGGGTTACAGCGTTTATTGGGTCCTTCCTC
CTCAATATCCTTCTTTTTGCGGGCGTGATTTTTTTTCTCCGCAAGAGCCA
TTTGAGCGCCGCTGCAATCATCAATCGCAAGCGGGACATTTCGTCGTCGG
TCTCGGGATTTTCCATCGATCGCTCTGCCAATGGGAGGCCACAGCACAGC
AGAAGACAAAGCTATCAGAGCATACCCACCAGCGCCGTCGTTTAA
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protein sequence of NO01G02260.1

>NO01G02260.1-protein ID=NO01G02260.1-protein|Name=NO01G02260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=615bp
MVHESVFVSIRPMQQARRHFLVALLLVIVEAQQEQPPSTPFQPNMPPPPP
PLAPPFPSPAPPPSSTQVGTTKPTTMKITWPTQHGLIIDAGSTGSRMHVY
QWDARRFETVPPPFSYPLTSNRWTDRLAPGISAFADSPEDVGSSLDPLIS
FAKDVLAGKEHQFQYFPIYLKATGGMRQLPTKQREAIVSEVRRYMMNETL
CPFYFEHDFARVVSGEEEGVYGWTAINFLLGKLLPASTGTGTADANSSVG
ALDLGGASTQISFFVPNQDILANMFKLQIGAQKHWNVYVHSFLYFGINSA
RDRLHTTLTDAADANKDKTKKSEKGSSSNGSIYSNKMVPVGSLRVTNPCL
PDGYEEVFRDRGKNYVVEGTAGSFSSCMTQVVPLLRKDLNSWCDFAHNNQ
CSFAGVYQPDLPPAPGNFGEFYGFGTFKDIWKMLDMPDVKANMTVYKERT
ESLCAMDWRQLQHMNQKKKKKKREQSLPFLAHYCFVAAFGYALLTEGYGF
EASRNLTVVNKIDGLKVTWALGAMLYEINALPWEYVKPQTWVTAFIGSFL
LNILLFAGVIFFLRKSHLSAAAIINRKRDISSSVSGFSIDRSANGRPQHS
RRQSYQSIPTSAVV*
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mRNA from alignment at chr1:587397..589241+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02260.1 ID=NO01G02260.1|Name=NO01G02260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1845bp|location=Sequence derived from alignment at chr1:587397..589241+ (Nannochloropsis oceanica)
ATGGTACACGAATCTGTATTCGTGAGCATTCGACCGATGCAGCAGGCACG
ACGGCACTTCCTGGTGGCATTGCTGCTAGTCATCGTAGAAGCCCAGCAAG
AGCAGCCCCCGTCGACGCCTTTCCAGCCCAACATGCCTCCGCCGCCCCCT
CCTCTAGCTCCTCCATTTCCATCCCCGGCACCCCCGCCTTCCTCCACTCA
AGTCGGTACAACCAAGCCGACAACAATGAAGATTACCTGGCCGACGCAGC
ACGGACTGATCATTGACGCTGGCAGCACAGGGAGCCGCATGCACGTATAT
CAATGGGATGCCCGGCGCTTTGAAACCGTGCCCCCTCCATTTAGCTATCC
TCTCACCAGCAACAGATGGACGGATCGGCTCGCCCCCGGCATCTCCGCGT
TTGCCGACAGCCCCGAGGACGTGGGTTCGTCTTTGGACCCGCTTATATCC
TTTGCCAAAGATGTCCTGGCGGGGAAGGAGCATCAGTTCCAGTATTTCCC
CATTTATCTCAAGGCGACGGGGGGCATGCGTCAATTACCTACCAAGCAGC
GAGAGGCCATCGTTTCGGAAGTCCGGCGATACATGATGAACGAAACGCTG
TGTCCCTTCTACTTCGAACACGACTTTGCCCGTGTTGTGTCGGGGGAGGA
AGAAGGCGTTTACGGATGGACAGCCATCAACTTTCTGTTGGGGAAGCTGC
TGCCGGCAAGTACGGGAACGGGAACGGCTGACGCCAACTCGTCCGTGGGT
GCACTAGATCTGGGAGGCGCCTCCACGCAGATTTCGTTTTTTGTACCTAA
TCAGGATATCCTGGCGAACATGTTCAAGCTGCAGATTGGCGCCCAGAAGC
ATTGGAACGTCTATGTTCACTCCTTCCTGTACTTCGGGATCAACTCGGCC
CGGGACAGGCTGCACACCACCTTGACGGACGCGGCAGACGCCAACAAGGA
CAAGACGAAGAAGAGTGAGAAGGGCAGCAGCAGCAATGGTAGCATATATA
GCAACAAGATGGTGCCTGTGGGGTCCCTGAGGGTTACAAACCCGTGCTTG
CCTGATGGGTACGAGGAGGTGTTCAGGGACAGAGGGAAAAACTATGTCGT
AGAGGGGACGGCCGGCTCCTTCAGTAGCTGCATGACGCAGGTGGTGCCGC
TCCTGCGAAAGGATCTTAATTCTTGGTGTGACTTTGCTCACAACAATCAA
TGCTCGTTTGCTGGGGTGTACCAACCCGATCTTCCCCCCGCACCTGGAAA
TTTCGGAGAGTTTTACGGGTTCGGCACCTTTAAAGATATTTGGAAGATGC
TGGACATGCCGGACGTCAAGGCCAACATGACAGTGTACAAGGAGCGGACC
GAGAGTTTGTGTGCCATGGATTGGCGGCAGCTGCAGCATATGAACCAGAA
GAAGAAGAAGAAGAAGCGGGAGCAGAGCTTGCCCTTCTTAGCGCATTACT
GCTTCGTGGCCGCGTTTGGGTACGCGCTGCTCACGGAGGGTTATGGTTTT
GAGGCATCGCGGAACCTGACAGTGGTGAACAAGATTGACGGGCTCAAGGT
AACGTGGGCGCTTGGGGCCATGCTGTATGAGATCAACGCTTTACCGTGGG
AGTATGTCAAACCCCAGACGTGGGTTACAGCGTTTATTGGGTCCTTCCTC
CTCAATATCCTTCTTTTTGCGGGCGTGATTTTTTTTCTCCGCAAGAGCCA
TTTGAGCGCCGCTGCAATCATCAATCGCAAGCGGGACATTTCGTCGTCGG
TCTCGGGATTTTCCATCGATCGCTCTGCCAATGGGAGGCCACAGCACAGC
AGAAGACAAAGCTATCAGAGCATACCCACCAGCGCCGTCGTTTAA
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Coding sequence (CDS) from alignment at chr1:587397..589241+

>NO01G02260.1 ID=NO01G02260.1|Name=NO01G02260.1|organism=Nannochloropsis oceanica|type=CDS|length=1845bp|location=Sequence derived from alignment at chr1:587397..589241+ (Nannochloropsis oceanica)
ATGGTACACGAATCTGTATTCGTGAGCATTCGACCGATGCAGCAGGCACG
ACGGCACTTCCTGGTGGCATTGCTGCTAGTCATCGTAGAAGCCCAGCAAG
AGCAGCCCCCGTCGACGCCTTTCCAGCCCAACATGCCTCCGCCGCCCCCT
CCTCTAGCTCCTCCATTTCCATCCCCGGCACCCCCGCCTTCCTCCACTCA
AGTCGGTACAACCAAGCCGACAACAATGAAGATTACCTGGCCGACGCAGC
ACGGACTGATCATTGACGCTGGCAGCACAGGGAGCCGCATGCACGTATAT
CAATGGGATGCCCGGCGCTTTGAAACCGTGCCCCCTCCATTTAGCTATCC
TCTCACCAGCAACAGATGGACGGATCGGCTCGCCCCCGGCATCTCCGCGT
TTGCCGACAGCCCCGAGGACGTGGGTTCGTCTTTGGACCCGCTTATATCC
TTTGCCAAAGATGTCCTGGCGGGGAAGGAGCATCAGTTCCAGTATTTCCC
CATTTATCTCAAGGCGACGGGGGGCATGCGTCAATTACCTACCAAGCAGC
GAGAGGCCATCGTTTCGGAAGTCCGGCGATACATGATGAACGAAACGCTG
TGTCCCTTCTACTTCGAACACGACTTTGCCCGTGTTGTGTCGGGGGAGGA
AGAAGGCGTTTACGGATGGACAGCCATCAACTTTCTGTTGGGGAAGCTGC
TGCCGGCAAGTACGGGAACGGGAACGGCTGACGCCAACTCGTCCGTGGGT
GCACTAGATCTGGGAGGCGCCTCCACGCAGATTTCGTTTTTTGTACCTAA
TCAGGATATCCTGGCGAACATGTTCAAGCTGCAGATTGGCGCCCAGAAGC
ATTGGAACGTCTATGTTCACTCCTTCCTGTACTTCGGGATCAACTCGGCC
CGGGACAGGCTGCACACCACCTTGACGGACGCGGCAGACGCCAACAAGGA
CAAGACGAAGAAGAGTGAGAAGGGCAGCAGCAGCAATGGTAGCATATATA
GCAACAAGATGGTGCCTGTGGGGTCCCTGAGGGTTACAAACCCGTGCTTG
CCTGATGGGTACGAGGAGGTGTTCAGGGACAGAGGGAAAAACTATGTCGT
AGAGGGGACGGCCGGCTCCTTCAGTAGCTGCATGACGCAGGTGGTGCCGC
TCCTGCGAAAGGATCTTAATTCTTGGTGTGACTTTGCTCACAACAATCAA
TGCTCGTTTGCTGGGGTGTACCAACCCGATCTTCCCCCCGCACCTGGAAA
TTTCGGAGAGTTTTACGGGTTCGGCACCTTTAAAGATATTTGGAAGATGC
TGGACATGCCGGACGTCAAGGCCAACATGACAGTGTACAAGGAGCGGACC
GAGAGTTTGTGTGCCATGGATTGGCGGCAGCTGCAGCATATGAACCAGAA
GAAGAAGAAGAAGAAGCGGGAGCAGAGCTTGCCCTTCTTAGCGCATTACT
GCTTCGTGGCCGCGTTTGGGTACGCGCTGCTCACGGAGGGTTATGGTTTT
GAGGCATCGCGGAACCTGACAGTGGTGAACAAGATTGACGGGCTCAAGGT
AACGTGGGCGCTTGGGGCCATGCTGTATGAGATCAACGCTTTACCGTGGG
AGTATGTCAAACCCCAGACGTGGGTTACAGCGTTTATTGGGTCCTTCCTC
CTCAATATCCTTCTTTTTGCGGGCGTGATTTTTTTTCTCCGCAAGAGCCA
TTTGAGCGCCGCTGCAATCATCAATCGCAAGCGGGACATTTCGTCGTCGG
TCTCGGGATTTTCCATCGATCGCTCTGCCAATGGGAGGCCACAGCACAGC
AGAAGACAAAGCTATCAGAGCATACCCACCAGCGCCGTCGTTTAA
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Synonyms
Publications