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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr1 | genome | chr1:582244..584918 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G02240.2 vs.
Match: EWM29110.1 (hypothetical protein Naga_100007g53 [Nannochloropsis gaditana]) HSP 1 Score: 734.6 bits (1895), Expect = 2.600e-208 Identity = 347/478 (72.59%), Postives = 402/478 (84.10%), Query Frame = 0
Query: 13 GAFTATTTATITII-EEDGLLCDSKATERLHVLTKALGSLRNEYEIHEGTLSFHQGGNPAGKYGVVRFADNLLPIAMRKASKATAAFPLPLENSFLMGPRDVVFWYGCTPPPVRYFSIRSYLAYRFPGEGRNISGFMPGAELGDPTNNAVIQTTGGPHDPFSKTTLFVSTGDQLAFLRVREAFREAGHPELATNLDTLPSELVHFRNEGLPWALDRSDTLAWQFRVNEFINPSDSAAYLDKSWPVFLLRAKPDE---EEGGGKPPIPLITPPLKARGTGESEEWLRPALNELVAAVETHMATERDLVLVHTFPLAPLIPDAARCISDVSYCPVSMPIPAYNLTACNPTCDWFTRDSLYSTPPSESDFLNFLLPRGRVLVVVGINHAALGKATFTNFLMTGIRNPERPGHTPNFSSSHLAGSGQYFLSSQRPESFFLYAQELSRDCGTPARPFCELVTEECIAYDEYLFFAERVRVDVE 487
GA A + T+ EEDG++CD+ +R VL +ALG+L ++YEIHEG LSFH GGNPAGKYGVV+F + L+P A+++A+KATA FP+P+E SFLMGP+D VFWYGCTPPP RYFSIRSYLAYRFPGEGRNISG+MPGAELGDP NNAVI+TTGGP DPF KTTLFVSTGD++AF RVREAF +AG P A NLD LPSELV FR+ LPWA+DRSDT+AWQFRVNEFINP++ +AYLDK WPVFLLRAKP E +GG P +PL PPLK RGTGESEEWLR AL +LV AV+T M +R LVL H+FPLAP +PDA RCISD+ YCPV+MPIP +NLTACNPTCDWFTRDSLYSTPP++SDF+NF++PR RVL+VVG+NH LGKA FTNFL+TGIRNPERPGHTPNFSSSHLAGSGQY+L RPES FLYAQELSRDCG P RPFCELVTE+ IAYDEYLFFAER ++++
Sbjct: 29 GAMDAKDSIIQTVASEEDGIVCDTTGAKRHKVLAQALGTLFDQYEIHEGNLSFHMGGNPAGKYGVVKFDEALIPKALKRAAKATAGFPVPIEVSFLMGPQDAVFWYGCTPPPTRYFSIRSYLAYRFPGEGRNISGYMPGAELGDPVNNAVIRTTGGPTDPFGKTTLFVSTGDKVAFHRVREAFAQAGLPGEAANLDVLPSELVRFRDTTLPWAVDRSDTIAWQFRVNEFINPAEGSAYLDKVWPVFLLRAKPSEGGRGDGGVAPAMPLTAPPLKTRGTGESEEWLRSALEKLVEAVKTRMEVDRGLVLTHSFPLAPCMPDAIRCISDLDYCPVAMPIPQWNLTACNPTCDWFTRDSLYSTPPADSDFINFMIPRDRVLIVVGVNHVLLGKAAFTNFLVTGIRNPERPGHTPNFSSSHLAGSGQYYLPGVRPESDFLYAQELSRDCGFPPRPFCELVTEDNIAYDEYLFFAERAYLEMQ 506
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G02240.2 ID=NO01G02240.2|Name=NO01G02240.2|organism=Nannochloropsis oceanica|type=mRNA|length=2512bp
GATTCATTCTTCTTTCTTTTATGATTTCGACATTGACCCTGGTCAAGCCT
TTTCAATTATCGAACTATCTAAACGGGTCATCAATAGCCATTTGCAAGTC
AGGTGGGGGACACTGTGCCACAATGGTTTGGGTGGGGGGAGGAATCTTGG
CGGCGTCAATCCAAGCAATGTTAAACCTCCCCACCCAGGGTGATTGACTC
CTTGGGTGACTCGCTTACGTACACACGTCGGGTCGCGAGACGCAGAGCTT
TATTTTACGGTTACCTTACAAGTGAGCACATCCCTTCTCACGCTTTTCTC
GAAACAATTTTCGAAGAAAGACGCAGGCGTGATGTTGCCAGGCGTAGAGG
CAGCCCCCCAGGATCGCATTTTTAAAACCAGCCCTTGGGTCCCTGCCACC
TCACTCATTGCGCCTTCTCTCGCACATCGCTCTCCACCACTACACCACGA
CACAACAGGGGAGCATGACCAAGGCACTCTGTCTGCTGCTGCTGGTGGTG
GGCGCCTTCACAGCCACGACGACAGCGACGATAACGATAATCGAGGAGGA
TGGTCTCCTCTGCGATTCAAAAGCTACTGAGCGTCTTCATGTCCTGACTA
AAGCGCTCGGTAGCCTGCGAAATGAATACGAGATTCATGAAGGGACTTTG
TCCTTCCATCAGGGAGGGAATCCAGCAGGCAAATATGGAGTTGTAAGATT
TGCCGATAACCTTCTTCCAATCGCCATGCGCAAGGCAAGCAAGGCGACCG
CAGCCTTTCCTCTTCCTCTCGAGAATTCTTTTCTGATGGGACCCCGGGAC
GTGGTCTTTTGGTATGGGTGCACACCGCCCCCGGTGCGGTACTTTTCCAT
CCGCAGTTACCTTGCATATCGATTCCCAGGAGAAGGAAGGAACATAAGTG
GGTTCATGCCAGGAGCGGAGCTGGGAGATCCCACTAATAATGCAGTCATT
CAAACGACGGGCGGGCCTCATGACCCTTTCAGTAAAACGACCCTGTTTGT
CTCCACGGGCGATCAGCTGGCCTTTCTCCGCGTGCGTGAAGCATTTCGTG
AGGCGGGACATCCCGAACTGGCGACTAACCTCGATACGCTACCGTCTGAG
CTGGTGCATTTCCGTAACGAGGGTTTGCCCTGGGCGTTGGACAGATCGGA
CACTCTTGCATGGCAGTTTAGAGTGAATGAGTTCATCAATCCATCAGATA
GCGCTGCTTATCTTGACAAATCTTGGCCTGTGTTTTTGTTGCGTGCCAAA
CCGGATGAGGAAGAGGGTGGTGGCAAGCCCCCCATTCCGTTGATCACCCC
TCCTCTCAAAGCCCGCGGCACGGGGGAAAGCGAGGAATGGCTCCGCCCGG
CGTTGAATGAATTAGTGGCGGCCGTGGAGACCCACATGGCTACAGAACGC
GATCTGGTCCTCGTGCACACCTTCCCTCTTGCTCCTTTGATACCCGACGC
CGCTCGCTGCATCTCCGACGTGAGCTACTGCCCCGTATCGATGCCCATCC
CCGCCTACAACCTTACAGCCTGCAATCCAACCTGTGACTGGTTCACCCGC
GACAGTCTGTATTCCACCCCACCCTCTGAATCAGACTTCCTGAACTTCTT
GCTCCCCCGGGGCAGAGTGCTGGTGGTGGTGGGAATCAACCACGCTGCAT
TGGGGAAAGCCACTTTTACCAACTTCCTGATGACCGGAATCAGGAACCCC
GAACGCCCTGGGCACACCCCGAATTTCTCCAGCAGTCACTTGGCGGGATC
TGGCCAGTACTTTCTGTCGTCACAAAGACCGGAGAGTTTTTTCCTGTATG
CGCAAGAATTGTCACGGGATTGTGGGACACCGGCCAGGCCATTTTGCGAG
CTAGTGACGGAAGAGTGTATTGCGTACGACGAGTATCTATTTTTTGCTGA
GCGGGTACGTGTTGATGTTGAGATGTTGAGTATGGGAAGGGGGTGGCTGC
GTGGGCTGTTTCTACTCGCGTGCACGTGTCAGCTGATCTGCAGTCGACAA
CTCCCCGCCTTCATTGTTCTCACAAACCATTTTGCTCGCTTTACTCACTC
CGCGGTACCCTCTTCCCCCCTTTCTCCCCGTCCATCTTCTCAGGCATACC
TGGAGACTACTACAACTGTGGGGCCCAGCCCGGACGAGATAATTTCCCCC
TTCATTCTCGCCTTTGATCCAATCCCCGCTATTTCTCGACAGGGAAAACA
GCCAGCAGGAGAGGAGAACAAGGCCGCGACAGCAAAACTGCGTGGACAGG
GATCGTCGATGATGGACAAAAAGGAGAACGTGGACTTAGTAGTCACCAAA
TGATGTAGGAGTTGAAGAAATGAATCCTCCAAAAATGCAATGAAAGTCTG
TAAAGAACAGAGGGTTAGGAAAGAGTGAGTTTCTCAATTGGGCTTGGGAG
TAAAGAAGGAAGAGAGAGCGATTTGTCGTATTTCTGCGCTTCAATAGAAA
ATAATGTATGGAATCTGGTGATTTTTCATTAAAACATTATTTGCATGTAC
ATGGTGATTTTT back to topprotein sequence of NO01G02240.2 >NO01G02240.2-protein ID=NO01G02240.2-protein|Name=NO01G02240.2|organism=Nannochloropsis oceanica|type=polypeptide|length=613bp
MTKALCLLLLVVGAFTATTTATITIIEEDGLLCDSKATERLHVLTKALGS
LRNEYEIHEGTLSFHQGGNPAGKYGVVRFADNLLPIAMRKASKATAAFPL
PLENSFLMGPRDVVFWYGCTPPPVRYFSIRSYLAYRFPGEGRNISGFMPG
AELGDPTNNAVIQTTGGPHDPFSKTTLFVSTGDQLAFLRVREAFREAGHP
ELATNLDTLPSELVHFRNEGLPWALDRSDTLAWQFRVNEFINPSDSAAYL
DKSWPVFLLRAKPDEEEGGGKPPIPLITPPLKARGTGESEEWLRPALNEL
VAAVETHMATERDLVLVHTFPLAPLIPDAARCISDVSYCPVSMPIPAYNL
TACNPTCDWFTRDSLYSTPPSESDFLNFLLPRGRVLVVVGINHAALGKAT
FTNFLMTGIRNPERPGHTPNFSSSHLAGSGQYFLSSQRPESFFLYAQELS
RDCGTPARPFCELVTEECIAYDEYLFFAERVRVDVEMLSMGRGWLRGLFL
LACTCQLICSRQLPAFIVLTNHFARFTHSAVPSSPLSPRPSSQAYLETTT
TVGPSPDEIISPFILAFDPIPAISRQGKQPAGEENKAATAKLRGQGSSMM
DKKENVDLVVTK* back to topmRNA from alignment at chr1:582244..584918+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G02240.2 ID=NO01G02240.2|Name=NO01G02240.2|organism=Nannochloropsis oceanica|type=mRNA|length=2675bp|location=Sequence derived from alignment at chr1:582244..584918+ (Nannochloropsis oceanica)
GATTCATTCTTCTTTCTTTTATGATTTCGACATTGACCCTGGTCAAGCCT
TTTCAATTATCGAACTATCTAAACGGGTCATCAATAGCCATTTGCAAGTC
AGGTGGGGGACACTGTGCCACAATGGTTTGGGTGGGGGGAGGAATCTTGG
CGGCGTCAATCCAAGCAATGTTAAACCTCCCCACCCAGGGTGATTGACTC
CTTGGGTGACTCGCTTACGTACACACGTCGGGTCGCGAGACGCAGAGCTT
TATTTTACGGTTACCTTACAAGTGAGCACATCCCTTCTCACGCTTTTCTC
GAAACAATTTTCGAAGAAAGACGCAGGCGTGATGTTGCCAGGCGTAGAGG
CAGCCCCCCAGGATCGCATTTTTAAAACCAGCCCTTGGGTCCCTGCCACC
TCACTCATTGCGCCTTCTCTCGCACATCGCTCTCCACCACTACACCACGA
CACAACAGGGGAGCATGACCAAGGCACTCTGTCTGCTGCTGCTGGTGGTG
GGCGCCTTCACAGCCACGACGACAGCGACGATAACGATAATCGAGGAGGA
TGGTCTCCTCTGCGATTCAAAAGCTACTGAGCGTCTTCATGTCCTGACTA
AAGCGCTCGGTAGCCTGCGAAATGAATACGAGATTCATGAAGGGACTTTG
TCCTTCCATCAGGGAGGGAATCCAGCAGGCAAATATGGAGTTGTAAGATT
TGCCGATAACCTTCTTCCAATCGCCATGCGCAAGGCAAGCAAGGCGACCG
CAGCCTTTCCTCTTCCTCTCGAGAATTCTTTTCTGATGGGACCCCGGGAC
GTGGTCTTTTGGTATGGGTGCACACCGCCCCCGGTGCGGTACTTTTCCAT
CCGCAGTTACCTTGCATATCGATTCCCAGGAGAAGGAAGGAACATAAGTG
GGTTCATGCCAGGAGGTACGTTAGAGCTTGTGGAGATAGGGAAAAAGGGA
AAGGGAGGGAGGGAGGGAGGGTGGTAGTCGTGTTTTCCTGTCGTTAAAAT
GAGCGAAAATCATTAGAATGACCCCTTACCCCTCCCTCCCTACATCCCTC
CCTCCCTCATTCTTTCACTCTACAAAAGCGGAGCTGGGAGATCCCACTAA
TAATGCAGTCATTCAAACGACGGGCGGGCCTCATGACCCTTTCAGTAAAA
CGACCCTGTTTGTCTCCACGGGCGATCAGCTGGCCTTTCTCCGCGTGCGT
GAAGCATTTCGTGAGGCGGGACATCCCGAACTGGCGACTAACCTCGATAC
GCTACCGTCTGAGCTGGTGCATTTCCGTAACGAGGGTTTGCCCTGGGCGT
TGGACAGATCGGACACTCTTGCATGGCAGTTTAGAGTGAATGAGTTCATC
AATCCATCAGATAGCGCTGCTTATCTTGACAAATCTTGGCCTGTGTTTTT
GTTGCGTGCCAAACCGGATGAGGAAGAGGGTGGTGGCAAGCCCCCCATTC
CGTTGATCACCCCTCCTCTCAAAGCCCGCGGCACGGGGGAAAGCGAGGAA
TGGCTCCGCCCGGCGTTGAATGAATTAGTGGCGGCCGTGGAGACCCACAT
GGCTACAGAACGCGATCTGGTCCTCGTGCACACCTTCCCTCTTGCTCCTT
TGATACCCGACGCCGCTCGCTGCATCTCCGACGTGAGCTACTGCCCCGTA
TCGATGCCCATCCCCGCCTACAACCTTACAGCCTGCAATCCAACCTGTGA
CTGGTTCACCCGCGACAGTCTGTATTCCACCCCACCCTCTGAATCAGACT
TCCTGAACTTCTTGCTCCCCCGGGGCAGAGTGCTGGTGGTGGTGGGAATC
AACCACGCTGCATTGGGGAAAGCCACTTTTACCAACTTCCTGATGACCGG
AATCAGGAACCCCGAACGCCCTGGGCACACCCCGAATTTCTCCAGCAGTC
ACTTGGCGGGATCTGGCCAGTACTTTCTGTCGTCACAAAGACCGGAGAGT
TTTTTCCTGTATGCGCAAGAATTGTCACGGGATTGTGGGACACCGGCCAG
GCCATTTTGCGAGCTAGTGACGGAAGAGTGTATTGCGTACGACGAGTATC
TATTTTTTGCTGAGCGGGTACGTGTTGATGTTGAGATGTTGAGTATGGGA
AGGGGGTGGCTGCGTGGGCTGTTTCTACTCGCGTGCACGTGTCAGCTGAT
CTGCAGTCGACAACTCCCCGCCTTCATTGTTCTCACAAACCATTTTGCTC
GCTTTACTCACTCCGCGGTACCCTCTTCCCCCCTTTCTCCCCGTCCATCT
TCTCAGGCATACCTGGAGACTACTACAACTGTGGGGCCCAGCCCGGACGA
GATAATTTCCCCCTTCATTCTCGCCTTTGATCCAATCCCCGCTATTTCTC
GACAGGGAAAACAGCCAGCAGGAGAGGAGAACAAGGCCGCGACAGCAAAA
CTGCGTGGACAGGGATCGTCGATGATGGACAAAAAGGAGAACGTGGACTT
AGTAGTCACCAAATGATGTAGGAGTTGAAGAAATGAATCCTCCAAAAATG
CAATGAAAGTCTGTAAAGAACAGAGGGTTAGGAAAGAGTGAGTTTCTCAA
TTGGGCTTGGGAGTAAAGAAGGAAGAGAGAGCGATTTGTCGTATTTCTGC
GCTTCAATAGAAAATAATGTATGGAATCTGGTGATTTTTCATTAAAACAT
TATTTGCATGTACATGGTGATTTTT back to topCoding sequence (CDS) from alignment at chr1:582244..584918+ >NO01G02240.2 ID=NO01G02240.2|Name=NO01G02240.2|organism=Nannochloropsis oceanica|type=CDS|length=1839bp|location=Sequence derived from alignment at chr1:582244..584918+ (Nannochloropsis oceanica)
ATGACCAAGGCACTCTGTCTGCTGCTGCTGGTGGTGGGCGCCTTCACAGC
CACGACGACAGCGACGATAACGATAATCGAGGAGGATGGTCTCCTCTGCG
ATTCAAAAGCTACTGAGCGTCTTCATGTCCTGACTAAAGCGCTCGGTAGC
CTGCGAAATGAATACGAGATTCATGAAGGGACTTTGTCCTTCCATCAGGG
AGGGAATCCAGCAGGCAAATATGGAGTTGTAAGATTTGCCGATAACCTTC
TTCCAATCGCCATGCGCAAGGCAAGCAAGGCGACCGCAGCCTTTCCTCTT
CCTCTCGAGAATTCTTTTCTGATGGGACCCCGGGACGTGGTCTTTTGGTA
TGGGTGCACACCGCCCCCGGTGCGGTACTTTTCCATCCGCAGTTACCTTG
CATATCGATTCCCAGGAGAAGGAAGGAACATAAGTGGGTTCATGCCAGGA
GCGGAGCTGGGAGATCCCACTAATAATGCAGTCATTCAAACGACGGGCGG
GCCTCATGACCCTTTCAGTAAAACGACCCTGTTTGTCTCCACGGGCGATC
AGCTGGCCTTTCTCCGCGTGCGTGAAGCATTTCGTGAGGCGGGACATCCC
GAACTGGCGACTAACCTCGATACGCTACCGTCTGAGCTGGTGCATTTCCG
TAACGAGGGTTTGCCCTGGGCGTTGGACAGATCGGACACTCTTGCATGGC
AGTTTAGAGTGAATGAGTTCATCAATCCATCAGATAGCGCTGCTTATCTT
GACAAATCTTGGCCTGTGTTTTTGTTGCGTGCCAAACCGGATGAGGAAGA
GGGTGGTGGCAAGCCCCCCATTCCGTTGATCACCCCTCCTCTCAAAGCCC
GCGGCACGGGGGAAAGCGAGGAATGGCTCCGCCCGGCGTTGAATGAATTA
GTGGCGGCCGTGGAGACCCACATGGCTACAGAACGCGATCTGGTCCTCGT
GCACACCTTCCCTCTTGCTCCTTTGATACCCGACGCCGCTCGCTGCATCT
CCGACGTGAGCTACTGCCCCGTATCGATGCCCATCCCCGCCTACAACCTT
ACAGCCTGCAATCCAACCTGTGACTGGTTCACCCGCGACAGTCTGTATTC
CACCCCACCCTCTGAATCAGACTTCCTGAACTTCTTGCTCCCCCGGGGCA
GAGTGCTGGTGGTGGTGGGAATCAACCACGCTGCATTGGGGAAAGCCACT
TTTACCAACTTCCTGATGACCGGAATCAGGAACCCCGAACGCCCTGGGCA
CACCCCGAATTTCTCCAGCAGTCACTTGGCGGGATCTGGCCAGTACTTTC
TGTCGTCACAAAGACCGGAGAGTTTTTTCCTGTATGCGCAAGAATTGTCA
CGGGATTGTGGGACACCGGCCAGGCCATTTTGCGAGCTAGTGACGGAAGA
GTGTATTGCGTACGACGAGTATCTATTTTTTGCTGAGCGGGTACGTGTTG
ATGTTGAGATGTTGAGTATGGGAAGGGGGTGGCTGCGTGGGCTGTTTCTA
CTCGCGTGCACGTGTCAGCTGATCTGCAGTCGACAACTCCCCGCCTTCAT
TGTTCTCACAAACCATTTTGCTCGCTTTACTCACTCCGCGGTACCCTCTT
CCCCCCTTTCTCCCCGTCCATCTTCTCAGGCATACCTGGAGACTACTACA
ACTGTGGGGCCCAGCCCGGACGAGATAATTTCCCCCTTCATTCTCGCCTT
TGATCCAATCCCCGCTATTTCTCGACAGGGAAAACAGCCAGCAGGAGAGG
AGAACAAGGCCGCGACAGCAAAACTGCGTGGACAGGGATCGTCGATGATG
GACAAAAAGGAGAACGTGGACTTAGTAGTCACCAAATGA back to top
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