NO01G02220.1, NO01G02220.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02220.1
Unique NameNO01G02220.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length726
Alignment locationchr1:573108..573833 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:573108..573833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G02220.1 vs.
Match: EWM29215.1 (hypothetical protein Naga_100007g51 [Nannochloropsis gaditana])

HSP 1 Score: 355.9 bits (912), Expect = 9.800e-95
Identity = 178/228 (78.07%), Postives = 195/228 (85.53%), Query Frame = 0 
Query:   12 LLFVFLLVLLPAKFKAFTIFRYRSTHRFLSTSPIRASIEELYSGEPLDPNRRTLRLAFLAASRPKKPAKSDKERQLDEKVWGRWRLVEESIDRPLAADLAKYGAKLKPTYSKFEEDLFLDMYNGLMLTKEDTCAFGMGWQWTNLKDVYSAPTLRFRINRKEVGIDFDEYESVDDMPSVSFYLGTFKDGAMDVIEGKIQRNRDATPPEDGSEKKIVTVGTFTMVKVAAL 240
            +L   +LVLL +   AFT      +  + +T+ +R SIEELYSGEPLDPNRR LRLAFL+ SRPK+P K++KERQLDEKVWGRWRL EESIDRP AADLAKYG KLKPTYS+FEEDLFLDMYNGLMLTKEDTCAFGMGWQWTNLKDVYSAP +RFRINRKEVGIDFDEYESVD MPSVSFY GTFKDG+MDVIEG IQRNRDA PPEDGS   +VTVGTF MVKVA+L
Sbjct:    1 MLLAPVLVLLMSSTHAFTGRPRDISPAYRTTTRMRGSIEELYSGEPLDPNRRKLRLAFLSTSRPKQPPKTEKERQLDEKVWGRWRLEEESIDRPPAADLAKYGKKLKPTYSRFEEDLFLDMYNGLMLTKEDTCAFGMGWQWTNLKDVYSAPMIRFRINRKEVGIDFDEYESVDHMPSVSFYSGTFKDGSMDVIEGTIQRNRDAAPPEDGSAPVVVTVGTFRMVKVASL 228
The following BLAST results are available for this feature:
BLAST of NO01G02220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29215.19.800e-9578.07hypothetical protein Naga_100007g51 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02220NO01G02220Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02220.1NO01G02220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02220.1.cds1NO01G02220.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02220.1 ID=NO01G02220.1|Name=NO01G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=726bp
ATGGGCCGGCTCTCCTCATTCCCCTTCTCGCTGCTGCTTTTCGTTTTTCT
CTTGGTGCTGCTGCCGGCAAAATTCAAGGCATTTACTATTTTCAGATATC
GCTCAACTCATCGCTTTTTAAGCACCTCTCCAATTCGTGCTTCAATCGAG
GAGCTCTACAGCGGCGAGCCCCTCGATCCCAACCGTCGCACCCTCCGCCT
CGCCTTTTTGGCCGCTTCCCGGCCCAAGAAACCCGCCAAAAGCGACAAGG
AACGACAGCTGGATGAGAAGGTGTGGGGCCGCTGGCGCTTAGTAGAAGAG
TCGATCGACCGGCCCCTTGCTGCTGATCTGGCCAAGTACGGGGCCAAGCT
GAAGCCGACGTATTCGAAGTTCGAGGAGGATTTATTTTTGGACATGTATA
ATGGCCTCATGCTGACGAAGGAGGACACGTGTGCATTTGGCATGGGCTGG
CAATGGACGAACTTGAAAGATGTGTACTCGGCCCCAACATTGCGGTTTCG
GATCAACAGGAAGGAGGTGGGCATTGATTTCGACGAGTATGAATCGGTGG
ATGATATGCCTAGCGTCAGTTTTTACCTGGGCACGTTCAAGGATGGGGCG
ATGGATGTCATAGAGGGGAAGATCCAGAGAAATAGAGATGCGACCCCGCC
GGAGGATGGGTCGGAAAAAAAAATCGTTACGGTGGGAACATTCACAATGG
TCAAGGTGGCGGCTTTGCAATTTTGA
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protein sequence of NO01G02220.1

>NO01G02220.1-protein ID=NO01G02220.1-protein|Name=NO01G02220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MGRLSSFPFSLLLFVFLLVLLPAKFKAFTIFRYRSTHRFLSTSPIRASIE
ELYSGEPLDPNRRTLRLAFLAASRPKKPAKSDKERQLDEKVWGRWRLVEE
SIDRPLAADLAKYGAKLKPTYSKFEEDLFLDMYNGLMLTKEDTCAFGMGW
QWTNLKDVYSAPTLRFRINRKEVGIDFDEYESVDDMPSVSFYLGTFKDGA
MDVIEGKIQRNRDATPPEDGSEKKIVTVGTFTMVKVAALQF*
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mRNA from alignment at chr1:573108..573833-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02220.1 ID=NO01G02220.1|Name=NO01G02220.1|organism=Nannochloropsis oceanica|type=mRNA|length=726bp|location=Sequence derived from alignment at chr1:573108..573833- (Nannochloropsis oceanica)
ATGGGCCGGCTCTCCTCATTCCCCTTCTCGCTGCTGCTTTTCGTTTTTCT
CTTGGTGCTGCTGCCGGCAAAATTCAAGGCATTTACTATTTTCAGATATC
GCTCAACTCATCGCTTTTTAAGCACCTCTCCAATTCGTGCTTCAATCGAG
GAGCTCTACAGCGGCGAGCCCCTCGATCCCAACCGTCGCACCCTCCGCCT
CGCCTTTTTGGCCGCTTCCCGGCCCAAGAAACCCGCCAAAAGCGACAAGG
AACGACAGCTGGATGAGAAGGTGTGGGGCCGCTGGCGCTTAGTAGAAGAG
TCGATCGACCGGCCCCTTGCTGCTGATCTGGCCAAGTACGGGGCCAAGCT
GAAGCCGACGTATTCGAAGTTCGAGGAGGATTTATTTTTGGACATGTATA
ATGGCCTCATGCTGACGAAGGAGGACACGTGTGCATTTGGCATGGGCTGG
CAATGGACGAACTTGAAAGATGTGTACTCGGCCCCAACATTGCGGTTTCG
GATCAACAGGAAGGAGGTGGGCATTGATTTCGACGAGTATGAATCGGTGG
ATGATATGCCTAGCGTCAGTTTTTACCTGGGCACGTTCAAGGATGGGGCG
ATGGATGTCATAGAGGGGAAGATCCAGAGAAATAGAGATGCGACCCCGCC
GGAGGATGGGTCGGAAAAAAAAATCGTTACGGTGGGAACATTCACAATGG
TCAAGGTGGCGGCTTTGCAATTTTGA
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Coding sequence (CDS) from alignment at chr1:573108..573833-

>NO01G02220.1 ID=NO01G02220.1|Name=NO01G02220.1|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at chr1:573108..573833- (Nannochloropsis oceanica)
ATGGGCCGGCTCTCCTCATTCCCCTTCTCGCTGCTGCTTTTCGTTTTTCT
CTTGGTGCTGCTGCCGGCAAAATTCAAGGCATTTACTATTTTCAGATATC
GCTCAACTCATCGCTTTTTAAGCACCTCTCCAATTCGTGCTTCAATCGAG
GAGCTCTACAGCGGCGAGCCCCTCGATCCCAACCGTCGCACCCTCCGCCT
CGCCTTTTTGGCCGCTTCCCGGCCCAAGAAACCCGCCAAAAGCGACAAGG
AACGACAGCTGGATGAGAAGGTGTGGGGCCGCTGGCGCTTAGTAGAAGAG
TCGATCGACCGGCCCCTTGCTGCTGATCTGGCCAAGTACGGGGCCAAGCT
GAAGCCGACGTATTCGAAGTTCGAGGAGGATTTATTTTTGGACATGTATA
ATGGCCTCATGCTGACGAAGGAGGACACGTGTGCATTTGGCATGGGCTGG
CAATGGACGAACTTGAAAGATGTGTACTCGGCCCCAACATTGCGGTTTCG
GATCAACAGGAAGGAGGTGGGCATTGATTTCGACGAGTATGAATCGGTGG
ATGATATGCCTAGCGTCAGTTTTTACCTGGGCACGTTCAAGGATGGGGCG
ATGGATGTCATAGAGGGGAAGATCCAGAGAAATAGAGATGCGACCCCGCC
GGAGGATGGGTCGGAAAAAAAAATCGTTACGGTGGGAACATTCACAATGG
TCAAGGTGGCGGCTTTGCAATTTTGA
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Synonyms
Publications