NO01G02160.1, NO01G02160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02160.1
Unique NameNO01G02160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1573
Alignment locationchr1:547744..550062 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:547744..550062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02160.1 vs.
Match: EWM29187.1 (dna replication complex gins protein psf1 [Nannochloropsis gaditana])

HSP 1 Score: 355.5 bits (911), Expect = 1.100e-94
Identity = 170/199 (85.43%), Postives = 188/199 (94.47%), Query Frame = 0 
Query:    1 MNFGQKGRELLQELKRSDWLPLYSEDAVSRCLLECQGHMAQIRPALAQEMTEVPPEYLVALSVHLQNILRNKRCLLAYMQHRLDKVRELRWDTGGAVIPTHLQRKLSAKETEFFASYDKLLSEYMGHYPLLDLTGSILPPKEMCIEVRVLADCGEVMTDQGPVNLKKGTNHFLRRADVEGLIRQGLLQHV-PSASSAQS 199
            M+FG KGRELLQ+LKRSDWLPLY+EDAVSRCL ECQGHMAQIRPALAQEMTEVPPEYLVAL+VHLQ+ILRNKRCLLAYMQ+RLDKVR+LRW+TGGA+IPT LQRKLSAKE+EFFASYDK+LS+YMG+YPLLDLTGS LPPKE+CIEVRVLADCGE+MTDQGPVNL++GTNHFLRRADVEGLIRQG L H+ PSA    S
Sbjct:    1 MDFGLKGRELLQDLKRSDWLPLYNEDAVSRCLQECQGHMAQIRPALAQEMTEVPPEYLVALTVHLQHILRNKRCLLAYMQYRLDKVRDLRWETGGAIIPTRLQRKLSAKESEFFASYDKILSDYMGNYPLLDLTGSTLPPKEICIEVRVLADCGEIMTDQGPVNLERGTNHFLRRADVEGLIRQGFLLHIAPSARQGSS 199
The following BLAST results are available for this feature:
BLAST of NO01G02160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29187.11.100e-9485.43dna replication complex gins protein psf1 [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02160NO01G02160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02160.1NO01G02160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02160.1.cds1NO01G02160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02160.1.cds2NO01G02160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02160.1.cds3NO01G02160.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02160.1.cds4NO01G02160.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02160.1 ID=NO01G02160.1|Name=NO01G02160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1573bp
CCTGTGCGTGTGTATGTGGGGTATGAAATCAATCGTTGGCTCAATAGTCT
GGTTCGATGACAACTTTCAGTGACCTGTACTATCATCCGTGCCACATCTT
TAATTAGATGCATTTGTCGCGAGAAACAGTCGAACTTCGGGCTTGGCAAA
AAAGACGGGGAGCGAGGCCCGCTTTGGAGTGAGAGAGGAGTGGCTGCTTG
TCGCGGCAATGCGTATTTGCTATGAGAGCGAGTATGCATCATTCCAAGGC
AAGGGTATGAATGCGAAGGCATTAACATGCACCTTGAAATGACAGTATTA
TGGGGGGAGCGGTCATGAATATCGAAGCTTTCAAGGGTGGCGAATGCCAG
GGACTCAACGCAGCTCTGGGAAAGAGGCAGTCACACATCGATGCGCTTGC
ATGCTTTGGCGTGCCGCCAACCTGCTTCCAGCGTACTTGCCAACAAGCCG
TAAGATGGTACCGGTCTTTGGGCCGCGCCGCTGAGAAACAGTCTCAAGCA
GCAGGTAAACGCGGGCGAGGGATGCGCGACACAGGGCCAGACGTCAACGC
GCATGACGTTCGATCATTTAAATTCTGATTCAAGGCTTGACCCAAATACC
CTCCCGCCCTCCTCGCGCAATTCGACGCTCCGACTCCCACCTGCTTCCTT
TATTCTGTGTGTGCCCACCTTTCGTGGTGTTTCCTAGCTAAATTAGCCTC
ATGTCTCGAACGTCACTTACTGTAGCCCATTCCTCTCGTCCCAAACCCCA
CAGAACGTTATCTCCCTCCCGCCTCGTTGTTCCCTCGTCTTCTTCGCCGC
GCGCCTGCACCACTTCACTCCCGACAAAACAAATTATAACAAAACAAAAG
GATCCATGAACTTTGGACAAAAGGGCCGCGAGCTCTTGCAAGAATTGAAG
CGGAGTGACTGGTTGCCATTGTACAGCGAGGATGCCGTGAGCCGGTGCCT
GCTGGAATGCCAGGGGCACATGGCGCAGATCCGACCAGCCTTGGCGCAGG
AAATGACGGAGGTGCCCCCTGAGTATTTGGTGGCGTTGTCGGTGCACCTG
CAAAACATTCTACGGAACAAGCGCTGTCTCTTGGCCTACATGCAGCATCG
CTTAGACAAGGTGCGGGAATTGAGATGGGATACGGGTGGAGCTGTGATTC
CCACGCACCTGCAACGGAAGCTGTCTGCGAAAGAAACCGAGTTCTTTGCC
TCTTACGACAAGCTCCTGTCTGAATACATGGGCCATTACCCTTTGCTCGA
TCTTACGGGCTCTATCTTGCCGCCCAAGGAAATGTGCATCGAAGTGCGCG
TGCTGGCAGACTGCGGCGAAGTTATGACCGACCAAGGGCCCGTCAATTTG
AAGAAGGGTACGAACCATTTCTTGCGTCGCGCGGACGTGGAAGGATTGAT
AAGGCAGGGTTTGCTTCAGCATGTTCCGTCTGCCTCCTCGGCGCAAAGCA
CCATGTAGAAGTGGACGGATAGGGGTGAGCGGGGAGGAAAGATGACTGGT
CAAATTCAGAATATGTATATGCAGTATAACATGCCTTCAAAAGGGATAAA
AAGTAATTCAAATCACTTGGAAT
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protein sequence of NO01G02160.1

>NO01G02160.1-protein ID=NO01G02160.1-protein|Name=NO01G02160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MNFGQKGRELLQELKRSDWLPLYSEDAVSRCLLECQGHMAQIRPALAQEM
TEVPPEYLVALSVHLQNILRNKRCLLAYMQHRLDKVRELRWDTGGAVIPT
HLQRKLSAKETEFFASYDKLLSEYMGHYPLLDLTGSILPPKEMCIEVRVL
ADCGEVMTDQGPVNLKKGTNHFLRRADVEGLIRQGLLQHVPSASSAQSTM
*
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mRNA from alignment at chr1:547744..550062-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02160.1 ID=NO01G02160.1|Name=NO01G02160.1|organism=Nannochloropsis oceanica|type=mRNA|length=2319bp|location=Sequence derived from alignment at chr1:547744..550062- (Nannochloropsis oceanica)
CCTGTGCGTGTGTATGTGGGGTATGAAATCAATCGTTGGCTCAATAGTCT
GGTTCGATGACAACTTTCAGTGACCTGTACTATCATCCGTGCCACATCTT
TAATTAGATGCATTTGTCGCGAGAAACAGTCGAACTTCGGGCTTGGCAAA
AAAGACGGGGAGCGAGGCCCGCTTTGGAGTGAGAGAGGAGTGGCTGCTTG
TCGCGGCAATGCGTATTTGCTATGAGAGCGAGTATGCATCATTCCAAGGC
AAGGGTATGAATGCGAAGGCATTAACATGCACCTTGAAATGACAGTATTA
TGGGGGGAGCGGTCATGAATATCGAAGCTTTCAAGGGTGGCGAATGCCAG
GGACTCAACGCAGCTCTGGGAAAGAGGCAGTCACACATCGATGCGCTTGC
ATGCTTTGGCGTGCCGCCAACCTGCTTCCAGCGTACTTGCCAACAAGCCG
TAAGATGGTACCGGTCTTTGGGCCGCGCCGCTGAGAAACAGTCTCAAGCA
GCAGGTAAACGCGGGCGAGGGATGCGCGACACAGGGCCAGACGTCAACGC
GCATGACGTTCGATCATTTAAATTCTGATTCAAGGCTTGACCCAAATACC
CTCCCGCCCTCCTCGCGCAATTCGACGCTCCGACTCCCACCTGCTTCCTT
TATTCTGTGTGTGCCCACCTTTCGTGGTGTTTCCTAGCTAAATTAGCCTC
ATGTCTCGAACGTCACTTACTGTAGCCCATTCCTCTCGTCCCAAACCCCA
CAGAACGTTATCTCCCTCCCGCCTCGTTGTTCCCTCGTCTTCTTCGCCGC
GCGCCTGCACCACTTCACTCCCGACAAAACAAATTATAACAAAACAAAAG
GATCCATGAACTTTGGACAAAAGGGCCGCGAGCTCTTGCAAGAATTGAAG
CGGAGTGACTGGTTGCCATTGTACAGCGAGGATGCCGTGAGCCGGTGCCT
GCTGGAATGCCAGGGGCACATGGCGCAGATCCGACCAGCCTTGGCGCAGG
AAATGGTGAGTGAATGCCGGTGGGATATGATGGAGAATGTATCCGGGCAC
ATCTCAGTGTGCGATGATGGCGGGAAATGGGTATGGACAAGGTCGGCTGC
TGCCTTCATCAGTCGCCCGGATCATGCCAAAAGAATGTGTATGGGCGCAG
AGCGTACCAGATGGATGGGGTTGACCTGTAATAACGTGGGCAGCTCTTTC
TCTGGCCCGCCACTTCACGAACGATTCAAGTGTGTATACTTTTAATTTGA
TTCATATCCATACCAATCGTCACAGACGGAGGTGCCCCCTGAGTATTTGG
TGGCGTTGTCGGTGCACCTGCAAAACATTCTACGGAACAAGCGCTGTCTC
TTGGCCTACATGCAGGTACAAAAGGAGGATAGTGGGAAGTAAGAGATAGT
TGGGGTTTGTATAGTTGGATGAACTTGGGTGTTCGGAAGATATGCTGGTT
TTCTCCGTTGGGAAGGGAATGACACACACGAGAAACAACCATTATAATTC
TGTTTCAGAGTGCAGGCAGACACACGCGCAAATTTCGTGTACAAGAAGGC
CAACCAGTGCGGCACGATTATTGTTACAACATTTCTAAATGCTATGGTAT
CTTAATTGAGAAAAAAGAGAAATAACTGCGGATGCATACATTTGTATATA
ATGTTATCCACTCCCCTTTTTTCCGTCCCCTCGTACCTCCATTACGCCCT
TCCCTTCCATACCCCACCACACTAGCATCGCTTAGACAAGGTGCGGGAAT
TGAGATGGGATACGGGTGGAGCTGTGATTCCCACGCACCTGCAACGGAAG
CTGTCTGCGAAAGAAACCGAGTTCTTTGCCTCTTACGACAAGCTCCTGTC
TGAATACATGGGCCATTACCCTTTGCTCGATCTTACGGGCTCTATCTTGG
TACGTACGTAAAAAGGTGGAGACGGAAAGTATATATTTCGTAAATCTTCA
ATAATTTCATTATTGCTTTGTCAGAAATCTCATTTCCCGTCATCCTTCAA
CCTCCCCCTCCTCAGCCGCCCAAGGAAATGTGCATCGAAGTGCGCGTGCT
GGCAGACTGCGGCGAAGTTATGACCGACCAAGGGCCCGTCAATTTGAAGA
AGGGTACGAACCATTTCTTGCGTCGCGCGGACGTGGAAGGATTGATAAGG
CAGGGTTTGCTTCAGCATGTTCCGTCTGCCTCCTCGGCGCAAAGCACCAT
GTAGAAGTGGACGGATAGGGGTGAGCGGGGAGGAAAGATGACTGGTCAAA
TTCAGAATATGTATATGCAGTATAACATGCCTTCAAAAGGGATAAAAAGT
AATTCAAATCACTTGGAAT
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Coding sequence (CDS) from alignment at chr1:547744..550062-

>NO01G02160.1 ID=NO01G02160.1|Name=NO01G02160.1|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at chr1:547744..550062- (Nannochloropsis oceanica)
ATGAACTTTGGACAAAAGGGCCGCGAGCTCTTGCAAGAATTGAAGCGGAG
TGACTGGTTGCCATTGTACAGCGAGGATGCCGTGAGCCGGTGCCTGCTGG
AATGCCAGGGGCACATGGCGCAGATCCGACCAGCCTTGGCGCAGGAAATG
ACGGAGGTGCCCCCTGAGTATTTGGTGGCGTTGTCGGTGCACCTGCAAAA
CATTCTACGGAACAAGCGCTGTCTCTTGGCCTACATGCAGCATCGCTTAG
ACAAGGTGCGGGAATTGAGATGGGATACGGGTGGAGCTGTGATTCCCACG
CACCTGCAACGGAAGCTGTCTGCGAAAGAAACCGAGTTCTTTGCCTCTTA
CGACAAGCTCCTGTCTGAATACATGGGCCATTACCCTTTGCTCGATCTTA
CGGGCTCTATCTTGCCGCCCAAGGAAATGTGCATCGAAGTGCGCGTGCTG
GCAGACTGCGGCGAAGTTATGACCGACCAAGGGCCCGTCAATTTGAAGAA
GGGTACGAACCATTTCTTGCGTCGCGCGGACGTGGAAGGATTGATAAGGC
AGGGTTTGCTTCAGCATGTTCCGTCTGCCTCCTCGGCGCAAAGCACCATG
TAG
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Synonyms
Publications