NO01G02130.4, NO01G02130.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02130.4
Unique NameNO01G02130.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1456
Alignment locationchr1:541322..542871 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:541322..542871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02130.4 vs.
Match: EWM29188.1 (hypothetical protein Naga_100007g37 [Nannochloropsis gaditana])

HSP 1 Score: 92.0 bits (227), Expect = 3.400e-15
Identity = 89/286 (31.12%), Postives = 139/286 (48.60%), Query Frame = 0 
Query:   13 DMPPPQHQQQQQTGAGPDKEMMEVKQLLKQALGGAGILNHARALLVAGVHLVTDRFGDGQRPEASLTHLRLLHPNQRAMAAAETEEGRLALGLVADLLDSLGLRHSLSIFLPEANLDDGTAVGEGQPQQQQQQHPPSHWRSLQQAVVETLELDSDTGSEDPLLLQFMRRQMEKKRLRSESEAKEEGEEGDGKGRKEEGEEEAMLAPGGQEQALAARQQMVEKNGVEEITGAVEEAIAYEEEEEEGRSRCVLGEGNCRGMVGGNASTSIESYVKCNDANTAHIDTPG 299
            D+P  + Q   +  A    +++EVK LL+QALG AGIL++  ++L A  ++  D     Q  EAS + LRL+HPNQ  ++  E +EGRL L L A+LL S+ ++ +LS+F  EA+L     +   + +   ++   S + S+++   + L LD+   +  PLLLQ MRR  +    R      EE E  DG   ++  +  A  A   +E            NG E +    +E   + E E   R+RC     + R     +A  S  S  K NDA +   +T G
Sbjct:   45 DVPSDEPQDAARLKANTSVDVIEVKGLLRQALGQAGILDYVMSMLRASAYVAIDGTRPAQSAEASASDLRLIHPNQDLLSLREMDEGRLLLNLTAELLKSMNMQQTLSVFEREAHLHPNGPILSEEDEITAEKERLSWFSSVREEGAQVLGLDAH--ATGPLLLQLMRRHQQHVVSRLHQGRGEEKEMLDGTVHRDIQQSPAQTAAVERE------------NGGENVNQGADEDTTHAEGEMADRNRC-----SARNEESMSARKSKLS--KSNDARSIGSETLG 309
The following BLAST results are available for this feature:
BLAST of NO01G02130.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29188.13.400e-1531.12hypothetical protein Naga_100007g37 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02130NO01G02130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02130.4NO01G02130.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02130.4.cds1NO01G02130.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02130.4.cds2NO01G02130.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02130.4 ID=NO01G02130.4|Name=NO01G02130.4|organism=Nannochloropsis oceanica|type=mRNA|length=1456bp
CAGACTAGCCAGCGCTGGGCACACGTTCCGAGACGAGTGACCATGACAAG
CACTTCGCCTCAGAAGTGGGCCGAGGAGGACATGCCCCCGCCGCAGCACC
AGCAGCAGCAGCAGACCGGTGCGGGGCCGGACAAGGAAATGATGGAGGTC
AAACAGCTTTTAAAGCAGGCATTGGGAGGGGCGGGCATCCTAAACCACGC
TAGGGCGTTGCTTGTCGCCGGGGTCCATTTGGTCACGGATAGGTTTGGTG
ACGGGCAGCGACCCGAGGCCAGCCTCACGCATCTACGGCTTCTACACCCC
AATCAACGCGCGATGGCCGCAGCAGAAACAGAAGAAGGGCGACTCGCATT
AGGCTTGGTCGCCGACTTGCTTGATAGTTTAGGTTTAAGGCACAGCTTGT
CCATCTTTCTACCGGAAGCTAATCTCGACGATGGTACAGCAGTGGGGGAG
GGGCAGCCGCAGCAGCAGCAACAGCAGCATCCGCCTTCGCATTGGAGGTC
GCTGCAGCAAGCAGTCGTAGAAACGCTCGAGTTGGATTCTGATACTGGTT
CCGAAGATCCTCTCCTCTTACAATTCATGCGCCGCCAGATGGAAAAGAAG
CGATTGAGGAGTGAGTCGGAGGCGAAGGAGGAGGGAGAAGAGGGGGATGG
AAAAGGAAGGAAGGAGGAGGGAGAAGAAGAAGCGATGCTGGCACCTGGGG
GACAAGAGCAGGCTTTGGCCGCCAGGCAACAAATGGTAGAGAAAAACGGC
GTCGAAGAAATAACTGGAGCTGTGGAGGAGGCAATTGCGTATGAAGAGGA
GGAAGAGGAGGGTAGAAGCAGGTGTGTCTTGGGTGAGGGAAACTGTAGGG
GAATGGTTGGAGGCAATGCATCTACTTCAATTGAGTCTTATGTAAAATGT
AACGATGCAAACACCGCGCACATTGACACACCAGGAATGGCGGGCAGCAT
GAACAAGAAGAAGGGGATGGTAGTATTTCCTCGGCTGTAAACAAAAGAAC
CGGCGAGGGGAGCGGCAGCAGCAGCGATGATGACAACGATGACGAGGTGG
AACTGAGGCTCTCCATGGACAAAGTACGTACTTCCAAAAATCACGAAAGA
TTTCAAAGATCCCAAATTGTCCATATTTGTACTTTTCACTCTTGGACATC
ACTCGAACAGGTGGCCATTCAGGCCGAGGCAGAAACAATACAAGAGCAAG
AGGAGGAGGAGGACGTGGAGGATGGAGTCCGGGATGTCGCCTTAACCCAG
GTCTTCCCATCATTAGTACAACAAGAAGACAGTGTAGCGGATGATGAGGA
AGTATTAAAAGGGTAGTCTGTGTCTGAGTGGATTCGGGATGTGGGTGTAG
TAAAAGAGACCAAGAATAATGAAATCGACTTGCTAAGAAGTCTGGTAAAT
GTATTTTACTTGATTGCTGTTAGGAAAAACCTTAATGTATTTTACTTGAT
TGCTGT
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protein sequence of NO01G02130.4

>NO01G02130.4-protein ID=NO01G02130.4-protein|Name=NO01G02130.4|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MTSTSPQKWAEEDMPPPQHQQQQQTGAGPDKEMMEVKQLLKQALGGAGIL
NHARALLVAGVHLVTDRFGDGQRPEASLTHLRLLHPNQRAMAAAETEEGR
LALGLVADLLDSLGLRHSLSIFLPEANLDDGTAVGEGQPQQQQQQHPPSH
WRSLQQAVVETLELDSDTGSEDPLLLQFMRRQMEKKRLRSESEAKEEGEE
GDGKGRKEEGEEEAMLAPGGQEQALAARQQMVEKNGVEEITGAVEEAIAY
EEEEEEGRSRCVLGEGNCRGMVGGNASTSIESYVKCNDANTAHIDTPGMA
GSMNKKKGMVVFPRL*
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mRNA from alignment at chr1:541322..542871+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02130.4 ID=NO01G02130.4|Name=NO01G02130.4|organism=Nannochloropsis oceanica|type=mRNA|length=1550bp|location=Sequence derived from alignment at chr1:541322..542871+ (Nannochloropsis oceanica)
CAGACTAGCCAGCGCTGGGCACACGTTCCGAGACGAGTGACCATGACAAG
CACTTCGCCTCAGAAGTGGGCCGAGGAGGACATGCCCCCGCCGCAGCACC
AGCAGCAGCAGCAGACCGGTGCGGGGCCGGACAAGGAAATGATGGAGGTC
AAACAGCTTTTAAAGCAGGCATTGGGAGGGGCGGGCATCCTAAACCACGC
TAGGGTACGTTTTCGTCAAGCAATGCAATTCTCCCTGACTTTCGTCGCCC
ATCACGAGTACGCTAACTCTAGGCACCCCCACCCCTCACGCCAAACAGGC
GTTGCTTGTCGCCGGGGTCCATTTGGTCACGGATAGGTTTGGTGACGGGC
AGCGACCCGAGGCCAGCCTCACGCATCTACGGCTTCTACACCCCAATCAA
CGCGCGATGGCCGCAGCAGAAACAGAAGAAGGGCGACTCGCATTAGGCTT
GGTCGCCGACTTGCTTGATAGTTTAGGTTTAAGGCACAGCTTGTCCATCT
TTCTACCGGAAGCTAATCTCGACGATGGTACAGCAGTGGGGGAGGGGCAG
CCGCAGCAGCAGCAACAGCAGCATCCGCCTTCGCATTGGAGGTCGCTGCA
GCAAGCAGTCGTAGAAACGCTCGAGTTGGATTCTGATACTGGTTCCGAAG
ATCCTCTCCTCTTACAATTCATGCGCCGCCAGATGGAAAAGAAGCGATTG
AGGAGTGAGTCGGAGGCGAAGGAGGAGGGAGAAGAGGGGGATGGAAAAGG
AAGGAAGGAGGAGGGAGAAGAAGAAGCGATGCTGGCACCTGGGGGACAAG
AGCAGGCTTTGGCCGCCAGGCAACAAATGGTAGAGAAAAACGGCGTCGAA
GAAATAACTGGAGCTGTGGAGGAGGCAATTGCGTATGAAGAGGAGGAAGA
GGAGGGTAGAAGCAGGTGTGTCTTGGGTGAGGGAAACTGTAGGGGAATGG
TTGGAGGCAATGCATCTACTTCAATTGAGTCTTATGTAAAATGTAACGAT
GCAAACACCGCGCACATTGACACACCAGGAATGGCGGGCAGCATGAACAA
GAAGAAGGGGATGGTAGTATTTCCTCGGCTGTAAACAAAAGAACCGGCGA
GGGGAGCGGCAGCAGCAGCGATGATGACAACGATGACGAGGTGGAACTGA
GGCTCTCCATGGACAAAGTACGTACTTCCAAAAATCACGAAAGATTTCAA
AGATCCCAAATTGTCCATATTTGTACTTTTCACTCTTGGACATCACTCGA
ACAGGTGGCCATTCAGGCCGAGGCAGAAACAATACAAGAGCAAGAGGAGG
AGGAGGACGTGGAGGATGGAGTCCGGGATGTCGCCTTAACCCAGGTCTTC
CCATCATTAGTACAACAAGAAGACAGTGTAGCGGATGATGAGGAAGTATT
AAAAGGGTAGTCTGTGTCTGAGTGGATTCGGGATGTGGGTGTAGTAAAAG
AGACCAAGAATAATGAAATCGACTTGCTAAGAAGTCTGGTAAATGTATTT
TACTTGATTGCTGTTAGGAAAAACCTTAATGTATTTTACTTGATTGCTGT
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Coding sequence (CDS) from alignment at chr1:541322..542871+

>NO01G02130.4 ID=NO01G02130.4|Name=NO01G02130.4|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at chr1:541322..542871+ (Nannochloropsis oceanica)
ATGACAAGCACTTCGCCTCAGAAGTGGGCCGAGGAGGACATGCCCCCGCC
GCAGCACCAGCAGCAGCAGCAGACCGGTGCGGGGCCGGACAAGGAAATGA
TGGAGGTCAAACAGCTTTTAAAGCAGGCATTGGGAGGGGCGGGCATCCTA
AACCACGCTAGGGCGTTGCTTGTCGCCGGGGTCCATTTGGTCACGGATAG
GTTTGGTGACGGGCAGCGACCCGAGGCCAGCCTCACGCATCTACGGCTTC
TACACCCCAATCAACGCGCGATGGCCGCAGCAGAAACAGAAGAAGGGCGA
CTCGCATTAGGCTTGGTCGCCGACTTGCTTGATAGTTTAGGTTTAAGGCA
CAGCTTGTCCATCTTTCTACCGGAAGCTAATCTCGACGATGGTACAGCAG
TGGGGGAGGGGCAGCCGCAGCAGCAGCAACAGCAGCATCCGCCTTCGCAT
TGGAGGTCGCTGCAGCAAGCAGTCGTAGAAACGCTCGAGTTGGATTCTGA
TACTGGTTCCGAAGATCCTCTCCTCTTACAATTCATGCGCCGCCAGATGG
AAAAGAAGCGATTGAGGAGTGAGTCGGAGGCGAAGGAGGAGGGAGAAGAG
GGGGATGGAAAAGGAAGGAAGGAGGAGGGAGAAGAAGAAGCGATGCTGGC
ACCTGGGGGACAAGAGCAGGCTTTGGCCGCCAGGCAACAAATGGTAGAGA
AAAACGGCGTCGAAGAAATAACTGGAGCTGTGGAGGAGGCAATTGCGTAT
GAAGAGGAGGAAGAGGAGGGTAGAAGCAGGTGTGTCTTGGGTGAGGGAAA
CTGTAGGGGAATGGTTGGAGGCAATGCATCTACTTCAATTGAGTCTTATG
TAAAATGTAACGATGCAAACACCGCGCACATTGACACACCAGGAATGGCG
GGCAGCATGAACAAGAAGAAGGGGATGGTAGTATTTCCTCGGCTGTAA
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Synonyms
Publications