NO01G02110.1, NO01G02110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02110.1
Unique NameNO01G02110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1350
Alignment locationchr1:538436..539785 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:538436..539785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02110.1 vs.
Match: EWM29194.1 (serine racemase [Nannochloropsis gaditana])

HSP 1 Score: 521.9 bits (1343), Expect = 1.600e-144
Identity = 273/363 (75.21%), Postives = 309/363 (85.12%), Query Frame = 0 
Query:   11 SGLDTKLDLPLIQDAAMTIRPLVHRTPVLRCQAIETESLAAAHSVSVTHRELFFKCELFQKTGSFKVRGALNAVAHLPPTVTDVVTHSSGNHAQALAWAARAKGLNAHIVMPRTAPAVKVKAVKGYGGKVYLCEPTVEARWAMAAELVGSTGGALVHPSDDYNVMAGQGTVALEFLEQVKEETGGEELDALIIPIGGGGLLGGMAVAAKTMRPDIKIIGAEPAVVDDAARSKATGVLCLHPTPPPRSIADGLLTVLGKKTFPIVSSDKVDAILTVSEREIARAMRLVYERMKLVIEPSAGVGVAVALSCKKLNAVLGMECRRVGIVLCGGNVDISEMEEVWRLAAEEEEEEEREEDEINGHKS 374
            +GLD  +DL L+Q+AA TI+  VHRTPVLRC AIE  +L    ++S    E FFKCELFQKTGSFKVRGALNAVAHLP TVTDVVTHSSGNHAQALAWAAR KGL AHIVMPRTAP VKV AVKGYGG+VYLCEPTVEARWAMA ELV STGGALVHPSDDY+VMAGQGTVALEFLEQV+EETGG  LDALIIP+GGGGLLGGMAVAAK ++P IKIIGAEP++VDDA RSKA G LCLHP+P PRSIADGLLTVLG++T+PIVSSDKVDAI+TVSE+EIA+AMRLVYERMKLVIEPSAGVGVAVA+   +L AVLG+ CRRVG++LCGGN+D+  +  +WRLA  E++     E    G ++
Sbjct:   19 AGLD--IDLALVQEAAQTIKASVHRTPVLRCHAIENAALRNDSNLSF-RPEFFFKCELFQKTGSFKVRGALNAVAHLPSTVTDVVTHSSGNHAQALAWAARTKGLRAHIVMPRTAPKVKVDAVKGYGGQVYLCEPTVEARWAMAGELVASTGGALVHPSDDYSVMAGQGTVALEFLEQVEEETGGMSLDALIIPVGGGGLLGGMAVAAKALQPHIKIIGAEPSMVDDAFRSKAAGHLCLHPSPTPRSIADGLLTVLGQRTYPIVSSDKVDAIITVSEQEIAQAMRLVYERMKLVIEPSAGVGVAVAMRGDELEAVLGIGCRRVGVILCGGNLDMDRLGGIWRLARGEDDVMRDREGSERGERN 378
The following BLAST results are available for this feature:
BLAST of NO01G02110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29194.11.600e-14475.21serine racemase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02110NO01G02110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02110.1NO01G02110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02110.1.cds1NO01G02110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02110.1 ID=NO01G02110.1|Name=NO01G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp
GGCTGCTTTTCTCACCCTCACCCTCCCGTCCCCTCCACTTTGACACACAC
ACAGCGTGTCTGAGGACAAAAGCGCACTAGGCTCGGGCATCAGCCCATTT
ACACACACTCGGCAGGGATGGCAGCACCGCGCAAGACTGACCATTGCTCG
GGCTTGGACACAAAGCTCGACCTCCCCCTAATCCAAGACGCAGCCATGAC
CATACGACCCTTAGTGCACCGCACTCCCGTCCTACGGTGCCAAGCCATTG
AGACAGAAAGCCTTGCTGCTGCCCATTCCGTGTCAGTCACCCACCGGGAG
CTATTTTTCAAATGCGAGCTCTTCCAAAAAACGGGGTCATTCAAGGTCCG
CGGGGCCCTCAACGCGGTGGCCCACTTGCCTCCCACTGTCACAGACGTCG
TCACTCACAGCAGCGGAAACCATGCTCAAGCTCTTGCATGGGCAGCACGT
GCTAAAGGCCTTAATGCCCACATTGTTATGCCCCGGACAGCCCCCGCTGT
CAAGGTAAAAGCTGTGAAAGGGTACGGGGGCAAGGTCTATCTGTGCGAGC
CGACGGTAGAGGCCCGTTGGGCCATGGCAGCCGAGCTAGTGGGCTCAACA
GGCGGGGCATTGGTGCATCCTTCCGATGACTACAATGTGATGGCAGGCCA
AGGAACTGTAGCCCTGGAATTTTTAGAGCAGGTCAAGGAGGAGACGGGGG
GGGAGGAACTGGACGCGTTGATCATTCCGATTGGAGGGGGTGGGTTATTG
GGAGGCATGGCCGTGGCAGCTAAGACCATGCGGCCGGATATCAAGATAAT
AGGTGCAGAGCCCGCAGTAGTTGATGATGCGGCTAGGTCCAAGGCGACGG
GCGTGTTGTGTTTACACCCGACGCCGCCTCCACGGAGTATTGCTGATGGG
CTGTTGACGGTGTTGGGAAAGAAAACGTTTCCGATAGTGTCGTCCGATAA
GGTGGATGCGATTTTGACCGTATCGGAGAGGGAGATCGCCCGGGCGATGC
GTCTTGTGTATGAGAGGATGAAGCTGGTGATTGAGCCGAGTGCGGGGGTG
GGTGTGGCTGTGGCTTTGAGTTGCAAGAAATTAAATGCGGTGCTGGGGAT
GGAGTGTCGGAGAGTGGGCATTGTCTTATGTGGTGGCAATGTAGACATAA
GTGAAATGGAGGAGGTTTGGCGGTTGGCGGCTGAGGAGGAAGAAGAGGAA
GAGAGGGAGGAAGATGAGATTAACGGGCATAAGAGCAGTAGTAGTAGTAG
TTAGTAATGCGGGAGCAGGGGTAGAAGGCGTTAGATGTCAGAAAGATGTT
TAGTCTAGCAGACAAGAGGTAAATGGATAACTGCAACGAACGATTGGTTG
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protein sequence of NO01G02110.1

>NO01G02110.1-protein ID=NO01G02110.1-protein|Name=NO01G02110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MAAPRKTDHCSGLDTKLDLPLIQDAAMTIRPLVHRTPVLRCQAIETESLA
AAHSVSVTHRELFFKCELFQKTGSFKVRGALNAVAHLPPTVTDVVTHSSG
NHAQALAWAARAKGLNAHIVMPRTAPAVKVKAVKGYGGKVYLCEPTVEAR
WAMAAELVGSTGGALVHPSDDYNVMAGQGTVALEFLEQVKEETGGEELDA
LIIPIGGGGLLGGMAVAAKTMRPDIKIIGAEPAVVDDAARSKATGVLCLH
PTPPPRSIADGLLTVLGKKTFPIVSSDKVDAILTVSEREIARAMRLVYER
MKLVIEPSAGVGVAVALSCKKLNAVLGMECRRVGIVLCGGNVDISEMEEV
WRLAAEEEEEEEREEDEINGHKSSSSSS*
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mRNA from alignment at chr1:538436..539785+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02110.1 ID=NO01G02110.1|Name=NO01G02110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp|location=Sequence derived from alignment at chr1:538436..539785+ (Nannochloropsis oceanica)
GGCTGCTTTTCTCACCCTCACCCTCCCGTCCCCTCCACTTTGACACACAC
ACAGCGTGTCTGAGGACAAAAGCGCACTAGGCTCGGGCATCAGCCCATTT
ACACACACTCGGCAGGGATGGCAGCACCGCGCAAGACTGACCATTGCTCG
GGCTTGGACACAAAGCTCGACCTCCCCCTAATCCAAGACGCAGCCATGAC
CATACGACCCTTAGTGCACCGCACTCCCGTCCTACGGTGCCAAGCCATTG
AGACAGAAAGCCTTGCTGCTGCCCATTCCGTGTCAGTCACCCACCGGGAG
CTATTTTTCAAATGCGAGCTCTTCCAAAAAACGGGGTCATTCAAGGTCCG
CGGGGCCCTCAACGCGGTGGCCCACTTGCCTCCCACTGTCACAGACGTCG
TCACTCACAGCAGCGGAAACCATGCTCAAGCTCTTGCATGGGCAGCACGT
GCTAAAGGCCTTAATGCCCACATTGTTATGCCCCGGACAGCCCCCGCTGT
CAAGGTAAAAGCTGTGAAAGGGTACGGGGGCAAGGTCTATCTGTGCGAGC
CGACGGTAGAGGCCCGTTGGGCCATGGCAGCCGAGCTAGTGGGCTCAACA
GGCGGGGCATTGGTGCATCCTTCCGATGACTACAATGTGATGGCAGGCCA
AGGAACTGTAGCCCTGGAATTTTTAGAGCAGGTCAAGGAGGAGACGGGGG
GGGAGGAACTGGACGCGTTGATCATTCCGATTGGAGGGGGTGGGTTATTG
GGAGGCATGGCCGTGGCAGCTAAGACCATGCGGCCGGATATCAAGATAAT
AGGTGCAGAGCCCGCAGTAGTTGATGATGCGGCTAGGTCCAAGGCGACGG
GCGTGTTGTGTTTACACCCGACGCCGCCTCCACGGAGTATTGCTGATGGG
CTGTTGACGGTGTTGGGAAAGAAAACGTTTCCGATAGTGTCGTCCGATAA
GGTGGATGCGATTTTGACCGTATCGGAGAGGGAGATCGCCCGGGCGATGC
GTCTTGTGTATGAGAGGATGAAGCTGGTGATTGAGCCGAGTGCGGGGGTG
GGTGTGGCTGTGGCTTTGAGTTGCAAGAAATTAAATGCGGTGCTGGGGAT
GGAGTGTCGGAGAGTGGGCATTGTCTTATGTGGTGGCAATGTAGACATAA
GTGAAATGGAGGAGGTTTGGCGGTTGGCGGCTGAGGAGGAAGAAGAGGAA
GAGAGGGAGGAAGATGAGATTAACGGGCATAAGAGCAGTAGTAGTAGTAG
TTAGTAATGCGGGAGCAGGGGTAGAAGGCGTTAGATGTCAGAAAGATGTT
TAGTCTAGCAGACAAGAGGTAAATGGATAACTGCAACGAACGATTGGTTG
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Coding sequence (CDS) from alignment at chr1:538436..539785+

>NO01G02110.1 ID=NO01G02110.1|Name=NO01G02110.1|organism=Nannochloropsis oceanica|type=CDS|length=1137bp|location=Sequence derived from alignment at chr1:538436..539785+ (Nannochloropsis oceanica)
ATGGCAGCACCGCGCAAGACTGACCATTGCTCGGGCTTGGACACAAAGCT
CGACCTCCCCCTAATCCAAGACGCAGCCATGACCATACGACCCTTAGTGC
ACCGCACTCCCGTCCTACGGTGCCAAGCCATTGAGACAGAAAGCCTTGCT
GCTGCCCATTCCGTGTCAGTCACCCACCGGGAGCTATTTTTCAAATGCGA
GCTCTTCCAAAAAACGGGGTCATTCAAGGTCCGCGGGGCCCTCAACGCGG
TGGCCCACTTGCCTCCCACTGTCACAGACGTCGTCACTCACAGCAGCGGA
AACCATGCTCAAGCTCTTGCATGGGCAGCACGTGCTAAAGGCCTTAATGC
CCACATTGTTATGCCCCGGACAGCCCCCGCTGTCAAGGTAAAAGCTGTGA
AAGGGTACGGGGGCAAGGTCTATCTGTGCGAGCCGACGGTAGAGGCCCGT
TGGGCCATGGCAGCCGAGCTAGTGGGCTCAACAGGCGGGGCATTGGTGCA
TCCTTCCGATGACTACAATGTGATGGCAGGCCAAGGAACTGTAGCCCTGG
AATTTTTAGAGCAGGTCAAGGAGGAGACGGGGGGGGAGGAACTGGACGCG
TTGATCATTCCGATTGGAGGGGGTGGGTTATTGGGAGGCATGGCCGTGGC
AGCTAAGACCATGCGGCCGGATATCAAGATAATAGGTGCAGAGCCCGCAG
TAGTTGATGATGCGGCTAGGTCCAAGGCGACGGGCGTGTTGTGTTTACAC
CCGACGCCGCCTCCACGGAGTATTGCTGATGGGCTGTTGACGGTGTTGGG
AAAGAAAACGTTTCCGATAGTGTCGTCCGATAAGGTGGATGCGATTTTGA
CCGTATCGGAGAGGGAGATCGCCCGGGCGATGCGTCTTGTGTATGAGAGG
ATGAAGCTGGTGATTGAGCCGAGTGCGGGGGTGGGTGTGGCTGTGGCTTT
GAGTTGCAAGAAATTAAATGCGGTGCTGGGGATGGAGTGTCGGAGAGTGG
GCATTGTCTTATGTGGTGGCAATGTAGACATAAGTGAAATGGAGGAGGTT
TGGCGGTTGGCGGCTGAGGAGGAAGAAGAGGAAGAGAGGGAGGAAGATGA
GATTAACGGGCATAAGAGCAGTAGTAGTAGTAGTTAG
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Synonyms
Publications