NO01G02100.1, NO01G02100.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02100.1
Unique NameNO01G02100.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length997
Alignment locationchr1:537429..538425 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:537429..538425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO01G02100.1 vs.
Match: EWM29207.1 (hypothetical protein Naga_100007g33 [Nannochloropsis gaditana])

HSP 1 Score: 151.8 bits (382), Expect = 1.800e-33
Identity = 102/156 (65.38%), Postives = 116/156 (74.36%), Query Frame = 0 
Query:    4 LAQQRQFLLLVAACLLLAATKTHAFLAPV-GRLPALHARAPLS----TQQQNHMQQLAASTSSTRRRDLLKMEVDPAVIGGVIAGVVGVSLGVGAMIFTEKQTVRREERKAADKAKAARAQRAQAAASGTASATVQSSEPTSQGGQGGLTEDEDGW 155
            L Q+   L L+A CLL AA  T AF+ P  GR  +LH R+  S    +QQ N M  L+ ++S  R+RDL+KMEVDPAVIGGVIAGVVGVSLGVGAMIFTEKQT+RREERKAADK KAARAQRA AAA+  AS   QSSE  SQGG GG+ EDEDGW
Sbjct:    3 LTQKNVALALMAICLLGAAM-TQAFVVPAPGRALSLHTRSSTSQHKRSQQYNFMHLLSGTSSCKRKRDLIKMEVDPAVIGGVIAGVVGVSLGVGAMIFTEKQTLRREERKAADKEKAARAQRAAAAAA--ASTAAQSSEGGSQGGDGGIAEDEDGW 155
The following BLAST results are available for this feature:
BLAST of NO01G02100.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29207.11.800e-3365.38hypothetical protein Naga_100007g33 [Nannochlorops... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02100NO01G02100Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02100.1NO01G02100.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02100.1.cds1NO01G02100.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02100.1 ID=NO01G02100.1|Name=NO01G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=997bp
AACCACGTACATATGCTCTCTTAAAGAAGCGATTCCCCATCATGACGATC
CAAGTGCGTTGATTTTGCTTTGCCTGTGTGACTACATGTGATATGTCATT
CACACTTATTCATTTCGTTGACCGATACTCCCTTAGCAATGCCCCGCAGG
ATCATGGTCAGTGCACGTGGCGGGTGGTCTCTTCGAAAAAATGTCCCCCC
AAGAAGTTATCCCCAACGACGCATCAAAGCGTGAGGTGGTCTTCTGGATG
CCACCGCCTGCGCCACGTCTTTAAGACGCCCCCATCACCCACAGCCCTAT
TTGTGTATTCAAACTAGCAGTAAAGTTGCTGTGCAGGATACGCACCTTTC
GCGTTTTATCTCCTCCGAGCCCTGTCTCTTCCAAGCCCACCACTCCTCTC
ACACCATCCCCGACACACCCAACACGATGCACAGTACACATGGCCTTCCT
CGCACAACAAAGACAATTCCTCCTCTTGGTAGCAGCCTGCCTGCTACTGG
CTGCTACCAAGACCCACGCATTCCTGGCCCCCGTCGGCCGCCTACCTGCC
TTGCATGCACGTGCTCCTTTGTCAACACAACAACAAAACCATATGCAGCA
ACTGGCCGCTTCCACCTCATCTACGCGCAGACGGGACCTCCTAAAAATGG
AGGTCGATCCTGCGGTCATCGGAGGTGTAATTGCGGGTGTTGTTGGCGTG
AGTTTGGGGGTAGGTGCCATGATATTCACAGAGAAGCAAACCGTGCGACG
GGAGGAACGAAAGGCAGCAGATAAAGCCAAAGCCGCACGGGCTCAAAGGG
CTCAAGCAGCAGCCTCGGGGACTGCGTCGGCAACAGTGCAGTCTTCGGAA
CCGACGTCACAAGGAGGACAAGGAGGGTTGACAGAAGATGAGGACGGCTG
GTAATTTTGAAAAAGGGAGTTATTGTTGGGGAAAGGGGCGGGAGGGAGGA
TGGGGAGGAGAAGTGAGGGAGATTGTCGGGCTGTAGGGAGGGAGGGA
back to top

protein sequence of NO01G02100.1

>NO01G02100.1-protein ID=NO01G02100.1-protein|Name=NO01G02100.1|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MAFLAQQRQFLLLVAACLLLAATKTHAFLAPVGRLPALHARAPLSTQQQN
HMQQLAASTSSTRRRDLLKMEVDPAVIGGVIAGVVGVSLGVGAMIFTEKQ
TVRREERKAADKAKAARAQRAQAAASGTASATVQSSEPTSQGGQGGLTED
EDGW*
back to top

mRNA from alignment at chr1:537429..538425-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02100.1 ID=NO01G02100.1|Name=NO01G02100.1|organism=Nannochloropsis oceanica|type=mRNA|length=997bp|location=Sequence derived from alignment at chr1:537429..538425- (Nannochloropsis oceanica)
AACCACGTACATATGCTCTCTTAAAGAAGCGATTCCCCATCATGACGATC
CAAGTGCGTTGATTTTGCTTTGCCTGTGTGACTACATGTGATATGTCATT
CACACTTATTCATTTCGTTGACCGATACTCCCTTAGCAATGCCCCGCAGG
ATCATGGTCAGTGCACGTGGCGGGTGGTCTCTTCGAAAAAATGTCCCCCC
AAGAAGTTATCCCCAACGACGCATCAAAGCGTGAGGTGGTCTTCTGGATG
CCACCGCCTGCGCCACGTCTTTAAGACGCCCCCATCACCCACAGCCCTAT
TTGTGTATTCAAACTAGCAGTAAAGTTGCTGTGCAGGATACGCACCTTTC
GCGTTTTATCTCCTCCGAGCCCTGTCTCTTCCAAGCCCACCACTCCTCTC
ACACCATCCCCGACACACCCAACACGATGCACAGTACACATGGCCTTCCT
CGCACAACAAAGACAATTCCTCCTCTTGGTAGCAGCCTGCCTGCTACTGG
CTGCTACCAAGACCCACGCATTCCTGGCCCCCGTCGGCCGCCTACCTGCC
TTGCATGCACGTGCTCCTTTGTCAACACAACAACAAAACCATATGCAGCA
ACTGGCCGCTTCCACCTCATCTACGCGCAGACGGGACCTCCTAAAAATGG
AGGTCGATCCTGCGGTCATCGGAGGTGTAATTGCGGGTGTTGTTGGCGTG
AGTTTGGGGGTAGGTGCCATGATATTCACAGAGAAGCAAACCGTGCGACG
GGAGGAACGAAAGGCAGCAGATAAAGCCAAAGCCGCACGGGCTCAAAGGG
CTCAAGCAGCAGCCTCGGGGACTGCGTCGGCAACAGTGCAGTCTTCGGAA
CCGACGTCACAAGGAGGACAAGGAGGGTTGACAGAAGATGAGGACGGCTG
GTAATTTTGAAAAAGGGAGTTATTGTTGGGGAAAGGGGCGGGAGGGAGGA
TGGGGAGGAGAAGTGAGGGAGATTGTCGGGCTGTAGGGAGGGAGGGA
back to top

Coding sequence (CDS) from alignment at chr1:537429..538425-

>NO01G02100.1 ID=NO01G02100.1|Name=NO01G02100.1|organism=Nannochloropsis oceanica|type=CDS|length=465bp|location=Sequence derived from alignment at chr1:537429..538425- (Nannochloropsis oceanica)
ATGGCCTTCCTCGCACAACAAAGACAATTCCTCCTCTTGGTAGCAGCCTG
CCTGCTACTGGCTGCTACCAAGACCCACGCATTCCTGGCCCCCGTCGGCC
GCCTACCTGCCTTGCATGCACGTGCTCCTTTGTCAACACAACAACAAAAC
CATATGCAGCAACTGGCCGCTTCCACCTCATCTACGCGCAGACGGGACCT
CCTAAAAATGGAGGTCGATCCTGCGGTCATCGGAGGTGTAATTGCGGGTG
TTGTTGGCGTGAGTTTGGGGGTAGGTGCCATGATATTCACAGAGAAGCAA
ACCGTGCGACGGGAGGAACGAAAGGCAGCAGATAAAGCCAAAGCCGCACG
GGCTCAAAGGGCTCAAGCAGCAGCCTCGGGGACTGCGTCGGCAACAGTGC
AGTCTTCGGAACCGACGTCACAAGGAGGACAAGGAGGGTTGACAGAAGAT
GAGGACGGCTGGTAA
back to top
Synonyms
Publications