|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr1 | genome | chr1:534212..537076 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G02090.1 vs.
Match: EWM29169.1 (aureochrome1-like protein [Nannochloropsis gaditana]) HSP 1 Score: 460.3 bits (1183), Expect = 7.400e-126 Identity = 270/377 (71.62%), Postives = 301/377 (79.84%), Query Frame = 0
Query: 113 MATAVLRQPQCKVAPSQLPVYARARGESSVADLDLNMETLLEEYVLDDDDMGMDFWDGTNTSDTSKDTAPNNISDFDDMDEMASGGGSGRGLGGKTSKISSSSNSSSSSSSGTGKGKKRKAAGGGSSGA--PRKKSHEQMERRRERNRILARRTRLRKKFIFESLQKQVMDLKRQNMKLKRIVKVNMAEQAPEVLGSCTARLPSIVTESMAEASTLLERGDFNLVKSLQTAQQSFVVTDPSLPDNPIVFASQGFLDMTGYSMGQVLGRNCRFLQGPRTDPAAVEKIRKGVATGSDTSVALLNYKADGTAFWNQFFVAPLRDLNGEVVYFVGAQCVIDRPMEEMEEEARVKTKEEAEER--AAAEAGSEEEEDEEEED 486
MA +L+QPQCKV S LPVY+RA+G S DLDLNME LLE YVLD+ M +DF DGTN SDTSKDTAPNNISD DD+DEMA G G +S GK KKRK +G SG+ PRKKSHEQMERRRERNRILARRTRLRKKFIFESLQKQVMDLKRQN +LK IVK MA+QA EVLG+CT RLPSIVTESMAEAST+L+RGDFNL+K+LQT QQSFVVTDPSLPDNPIVFASQGFL+MTGYSM QVLGRNCRFLQGPRTD A V +IRKG+A G+DTSVALLNYK DGT FWNQFFVAPLRDLNGEVVYFVGAQ IDRP+EE+E++A + ++EAEER A +G EEE++EEED
Sbjct: 1 MAAIMLQQPQCKVPTSLLPVYSRAQGGQS-GDLDLNMEQLLEAYVLDEG-MDLDFLDGTNISDTSKDTAPNNISDLDDLDEMADGVGI---------------DSEGDIVKTGGKSKKRKTSGWSGSGSSIPRKKSHEQMERRRERNRILARRTRLRKKFIFESLQKQVMDLKRQNSRLKSIVKDKMADQASEVLGACTMRLPSIVTESMAEASTVLDRGDFNLIKALQTTQQSFVVTDPSLPDNPIVFASQGFLEMTGYSMSQVLGRNCRFLQGPRTDQATVAQIRKGIAEGADTSVALLNYKVDGTPFWNQFFVAPLRDLNGEVVYFVGAQSKIDRPLEEIEKDAAERARQEAEERNVAGLASGEGEEEEDEEED 360
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G02090.1 ID=NO01G02090.1|Name=NO01G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2273bp AAGCATACCCGGAGGAACGACTTGAGGTTGAGCTCTTATGTGAAGGCCTT CCCGCAAGCCTTCCTTCATCTCACAGTTCCACGACCACAGGAGCGGCAAG TACGCTGAACATCGGGTTTGAGAATGAGAGCTTTTGCATGATGGGGAGGT CGCGGTGGTCTTGGCAGCTCTGGCGAGTGCTTCGCATTATCAGAATGCTG CAATACCATATGATACCGCACAAAAAGGGCCTTTGGTGCTGCTTCATGAC CACAACCCCCACCCTCTCACCCCGCAAGCAAGATAAAAAGGAGGAGGATT TTGATGTCGACAAGGACCTTATCCGCTGCATGTCTAATACACAAGGACCT CTTTTCCTTCCCTTTCCAACGCACAGCTTTCTTTTTCCCAAGTGCCTGCA GCGCCAAAAAAGAGCAAGGCTTCCAATAACTCCCACAAAGCCTGCGCCCC TCCCCACCCTTCCCCTCGTCGTCATGGCTACGGCAGTGCTTCGACAACCT CAATGCAAGGTGGCCCCCTCCCAACTCCCGGTCTATGCCCGGGCTCGTGG AGAGAGTTCAGTAGCAGACTTGGACCTAAACATGGAGACTCTGTTGGAGG AATATGTGTTGGATGACGATGATATGGGCATGGATTTTTGGGACGGGACC AATACTTCGGACACGAGCAAAGACACGGCCCCGAACAATATCAGCGATTT TGACGACATGGACGAGATGGCGAGCGGCGGTGGAAGCGGACGAGGACTAG GGGGAAAGACAAGTAAAATCAGTAGCAGTAGCAACAGCAGCAGCAGCAGC AGCAGCGGTACGGGCAAAGGGAAGAAGCGCAAGGCCGCCGGTGGGGGTAG CAGTGGGGCGCCGAGGAAGAAGAGTCACGAGCAGATGGAGCGTAGAAGAG AAAGGAATCGAATTTTGGCCCGTCGGACGCGTCTGAGGAAGAAATTTATT TTTGAGAGTTTGCAGAAGCAAGTTATGGATTTGAAACGGCAGAACATGAA GCTCAAGAGGATCGTGAAGGTGAACATGGCGGAGCAAGCACCGGAGGTCC TCGGTTCGTGCACGGCCCGTCTGCCTTCAATCGTCACTGAGTCCATGGCA GAGGCGTCGACACTGCTGGAGCGAGGAGATTTCAATTTGGTCAAGTCGTT ACAGACGGCCCAGCAGTCGTTTGTGGTGACGGACCCGAGCTTGCCTGATA ACCCTATCGTATTTGCCTCGCAAGGCTTCCTGGACATGACGGGCTACAGC ATGGGGCAAGTCCTTGGGCGGAACTGTCGCTTTTTGCAGGGGCCTCGCAC GGACCCTGCGGCGGTGGAGAAGATTAGGAAGGGAGTGGCGACTGGGTCAG ATACGTCGGTGGCCCTGTTGAATTATAAGGCGGACGGAACGGCGTTTTGG AATCAATTTTTTGTGGCGCCTTTGAGGGATTTGAATGGGGAGGTGGTGTA TTTCGTGGGAGCCCAATGTGTGATTGATAGGCCCATGGAGGAGATGGAGG AGGAGGCGCGGGTAAAGACGAAGGAGGAAGCGGAGGAACGGGCGGCGGCG GAGGCGGGTAGTGAGGAGGAAGAAGATGAGGAAGAGGAGGATTGAGAGGG GGGAGAAGGAGATAAGAGAAGGAGGGAGGAGAGGAGGAAGAGTTCATAAG TGAGATGTATACAATAACACAAGGTCGAAAACGATAAAGAAGAGAGGAGT GACATCATGCACGAAAAAGGGAATAGATTCGGAGAGATATTGAGCAGGGA AAAAGCAAGAAGATGACAAGACGCAGACACGCACATACGGGTTGAAAATG AGATGGTTTTGTGAGGGCTGTGACGACGTTTTGTCGTGGTTTTTATCCGT TTTGATTAGCTTTTCGCAGCAGCAGCAGCAGCAGGAGTTTGGAGAAGAAG AGAGCCGGGCCGTCAGGACTGGGCGAGGCGATGAAGACATGAGACCTTGA GTAGTGTCAAGAAAGGAAGAAGAAAAAAAGAGAAGAAGAGGAAGATATAT GAAGAAGGAAAACGACGATGTGTATGTAGTAAGAAGAAGAAGGAGGATGA GGAGAAGAAGGAAGTGGAAGACAGGGCCAGCCAACAAGCAGAATCTTAAA AACAGGAAAAGTTAATTCGCAGAGAGATAAGTCGGCAGGACACAAAAGAG AGAGACTCCAATATCAACATTAGCAGCAACTGAAGTAGCAGGAAGACGAC TAAAAAATGGAGAGAGTTGCTACTGGTGCATTCCCATCCCCTCGCTGTCC CTGCTTGCCGGCGGAAATCTAGT back to topprotein sequence of NO01G02090.1 >NO01G02090.1-protein ID=NO01G02090.1-protein|Name=NO01G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp MMGRSRWSWQLWRVLRIIRMLQYHMIPHKKGLWCCFMTTTPTLSPRKQDK KEEDFDVDKDLIRCMSNTQGPLFLPFPTHSFLFPKCLQRQKRARLPITPT KPAPLPTLPLVVMATAVLRQPQCKVAPSQLPVYARARGESSVADLDLNME TLLEEYVLDDDDMGMDFWDGTNTSDTSKDTAPNNISDFDDMDEMASGGGS GRGLGGKTSKISSSSNSSSSSSSGTGKGKKRKAAGGGSSGAPRKKSHEQM ERRRERNRILARRTRLRKKFIFESLQKQVMDLKRQNMKLKRIVKVNMAEQ APEVLGSCTARLPSIVTESMAEASTLLERGDFNLVKSLQTAQQSFVVTDP SLPDNPIVFASQGFLDMTGYSMGQVLGRNCRFLQGPRTDPAAVEKIRKGV ATGSDTSVALLNYKADGTAFWNQFFVAPLRDLNGEVVYFVGAQCVIDRPM EEMEEEARVKTKEEAEERAAAEAGSEEEEDEEEED* back to topmRNA from alignment at chr1:534212..537076+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G02090.1 ID=NO01G02090.1|Name=NO01G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2865bp|location=Sequence derived from alignment at chr1:534212..537076+ (Nannochloropsis oceanica) AAGCATACCCGGAGGAACGACTTGAGGTTGAGCTCTTATGTGAAGGCCTT
CCCGCAAGCCTTCCTTCATCTCACAGTTCCACGACCACAGGAGCGGCAAG
TACGCTGAACATCGGGTTTGAGAATGAGAGCTTTTGCATGATGGGGAGGT
CGCGGTGGTCTTGGCAGCTCTGGCGAGTGCTTCGCATTATCAGAATGCTG
CAATACCATATGATACCGCACAAAAAGGGCCTTTGGTGCTGCTTCATGAC
CACAACCCCCACCCTCTCACCCCGCAAGCAAGATAAAAAGGAGGAGGATT
TTGATGTCGACAAGGACCTTATCCGCTGCATGTCTAATACACAAGGACCT
CTTTTCCTTCCCTTTCCAACGCACAGCTTTCTTTTTCCCAAGTGCCTGCA
GCGCCAAAAAAGAGCAAGGCTTCCAATAACTCCCACAAAGCCTGCGCCCC
TCCCCACCCTTCCCCTCGTCGTCATGGCTACGGCAGTGCTTCGACAACCT
CAATGCAAGGTGGCCCCCTCCCAACTCCCGGTCTATGCCCGGGCTCGTGG
AGAGAGTTCAGTAGCAGACTTGGTACGTACCCACTAAGCCCCTCTGCCAA
TATCAGGAGTAGCAACACCAGCAGGATTAGAGGTAATAGTAGTGATAAGC
AATACGACGAGTGGATAGATATCACACCCCTAGGCCACCTATCTATTATT
TTTTAGTCCCGTTAAGACACGTATGTCAACGACGCATGCCTAGGCTCATC
GTTATTCCCTCCCCTCCCTCCTTCTCTCCTCTCTCGCCATTCTTCAAAAA
CACAGGACCTAAACATGGAGACTCTGTTGGAGGAATATGTGTTGGATGAC
GATGATATGGGCATGGATTTTTGGGACGGGACCAATACTTCGGACACGAG
CAAAGACACGGCCCCGAACAATATCAGCGATGTACGTGTGCCTGTGCCTC
TTTCCTCCTCAGCAATTTTATTTGTCAAGCGAGAGGATAAAGTATGCAAT
TGCTTAAGTTTTGGATAAAGACTCCGGAGCGGGATCAGAACATTCCATAA
TTTTTTTCGACGATCTTCACATCTTTTCAACTCTCCTTTCTCAAACCCCA
ACAACCTTAAAAAAATTAACAGTTTGACGACATGGACGAGATGGCGAGCG
GCGGTGGAAGCGGACGAGGACTAGGGGGAAAGACAAGTAAAATCAGTAGC
AGTAGCAACAGCAGCAGCAGCAGCAGCAGCGGTACGGGCAAAGGGAAGAA
GCGCAAGGCCGCCGGTGGGGGTAGCAGTGGGGCGCCGAGGAAGAAGAGTC
ACGAGCAGATGGAGCGTAGAAGAGAAAGGAATCGAATTTTGGCCCGTCGG
ACGCGTCTGAGGAAGAAATTTATTTTTGAGAGTTTGCAGAAGCAAGTTAT
GGATTTGAAACGGCAGAACATGAAGCTCAAGAGGATCGTGAAGGTGAACA
TGGCGGAGCAAGCACCGGAGGTCCTCGGTTCGTGCACGGCCCGTCTGCCT
TCAATCGTCACTGAGTCCATGGCAGAGGCGTCGACACTGCTGGAGCGAGG
AGATTTCAATTTGGTCAAGTCGTTACAGACGGCCCAGCAGTCGTTTGTGG
TGACGGACCCGAGCTTGCCTGATAACCGTAAGTGGGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGATGATGTCATATTTTTATGATT
TGCCCCATTGCTCGCCCTTTGCTTATTTTACCTTGCCTCTTTCCTCTCTC
CCTCTTCCCACCTCGACATCCCCCCCCCACGCGCCTCAAACACAGCTATC
GTATTTGCCTCGCAAGGCTTCCTGGACATGACGGGCTACAGCATGGGGCA
AGTCCTTGGGCGGAACTGTCGCTTTTTGCAGGGGCCTCGCACGGACCCTG
CGGCGGTGGAGAAGATTAGGAAGGGAGTGGCGACTGGGTCAGATACGTCG
GTGGCCCTGTTGAATTATAAGGCGGACGGAACGGCGTTTTGGAATCAATT
TTTTGTGGCGCCTTTGAGGGATTTGAATGGGGAGGTGGTGTATTTCGTGG
GAGCCCAATGTGTGATTGATAGGCCCATGGAGGAGATGGAGGAGGAGGCG
CGGGTAAAGACGAAGGAGGAAGCGGAGGAACGGGCGGCGGCGGAGGCGGG
TAGTGAGGAGGAAGAAGATGAGGAAGAGGAGGATTGAGAGGGGGGAGAAG
GAGATAAGAGAAGGAGGGAGGAGAGGAGGAAGAGTTCATAAGTGAGATGT
ATACAATAACACAAGGTCGAAAACGATAAAGAAGAGAGGAGTGACATCAT
GCACGAAAAAGGGAATAGATTCGGAGAGATATTGAGCAGGGAAAAAGCAA
GAAGATGACAAGACGCAGACACGCACATACGGGTTGAAAATGAGATGGTT
TTGTGAGGGCTGTGACGACGTTTTGTCGTGGTTTTTATCCGTTTTGATTA
GCTTTTCGCAGCAGCAGCAGCAGCAGGAGTTTGGAGAAGAAGAGAGCCGG
GCCGTCAGGACTGGGCGAGGCGATGAAGACATGAGACCTTGAGTAGTGTC
AAGAAAGGAAGAAGAAAAAAAGAGAAGAAGAGGAAGATATATGAAGAAGG
AAAACGACGATGTGTATGTAGTAAGAAGAAGAAGGAGGATGAGGAGAAGA
AGGAAGTGGAAGACAGGGCCAGCCAACAAGCAGAATCTTAAAAACAGGAA
AAGTTAATTCGCAGAGAGATAAGTCGGCAGGACACAAAAGAGAGAGACTC
CAATATCAACATTAGCAGCAACTGAAGTAGCAGGAAGACGACTAAAAAAT
GGAGAGAGTTGCTACTGGTGCATTCCCATCCCCTCGCTGTCCCTGCTTGC
CGGCGGAAATCTAGT back to topCoding sequence (CDS) from alignment at chr1:534212..537076+ >NO01G02090.1 ID=NO01G02090.1|Name=NO01G02090.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr1:534212..537076+ (Nannochloropsis oceanica) ATGATGGGGAGGTCGCGGTGGTCTTGGCAGCTCTGGCGAGTGCTTCGCAT TATCAGAATGCTGCAATACCATATGATACCGCACAAAAAGGGCCTTTGGT GCTGCTTCATGACCACAACCCCCACCCTCTCACCCCGCAAGCAAGATAAA AAGGAGGAGGATTTTGATGTCGACAAGGACCTTATCCGCTGCATGTCTAA TACACAAGGACCTCTTTTCCTTCCCTTTCCAACGCACAGCTTTCTTTTTC CCAAGTGCCTGCAGCGCCAAAAAAGAGCAAGGCTTCCAATAACTCCCACA AAGCCTGCGCCCCTCCCCACCCTTCCCCTCGTCGTCATGGCTACGGCAGT GCTTCGACAACCTCAATGCAAGGTGGCCCCCTCCCAACTCCCGGTCTATG CCCGGGCTCGTGGAGAGAGTTCAGTAGCAGACTTGGACCTAAACATGGAG ACTCTGTTGGAGGAATATGTGTTGGATGACGATGATATGGGCATGGATTT TTGGGACGGGACCAATACTTCGGACACGAGCAAAGACACGGCCCCGAACA ATATCAGCGATTTTGACGACATGGACGAGATGGCGAGCGGCGGTGGAAGC GGACGAGGACTAGGGGGAAAGACAAGTAAAATCAGTAGCAGTAGCAACAG CAGCAGCAGCAGCAGCAGCGGTACGGGCAAAGGGAAGAAGCGCAAGGCCG CCGGTGGGGGTAGCAGTGGGGCGCCGAGGAAGAAGAGTCACGAGCAGATG GAGCGTAGAAGAGAAAGGAATCGAATTTTGGCCCGTCGGACGCGTCTGAG GAAGAAATTTATTTTTGAGAGTTTGCAGAAGCAAGTTATGGATTTGAAAC GGCAGAACATGAAGCTCAAGAGGATCGTGAAGGTGAACATGGCGGAGCAA GCACCGGAGGTCCTCGGTTCGTGCACGGCCCGTCTGCCTTCAATCGTCAC TGAGTCCATGGCAGAGGCGTCGACACTGCTGGAGCGAGGAGATTTCAATT TGGTCAAGTCGTTACAGACGGCCCAGCAGTCGTTTGTGGTGACGGACCCG AGCTTGCCTGATAACCCTATCGTATTTGCCTCGCAAGGCTTCCTGGACAT GACGGGCTACAGCATGGGGCAAGTCCTTGGGCGGAACTGTCGCTTTTTGC AGGGGCCTCGCACGGACCCTGCGGCGGTGGAGAAGATTAGGAAGGGAGTG GCGACTGGGTCAGATACGTCGGTGGCCCTGTTGAATTATAAGGCGGACGG AACGGCGTTTTGGAATCAATTTTTTGTGGCGCCTTTGAGGGATTTGAATG GGGAGGTGGTGTATTTCGTGGGAGCCCAATGTGTGATTGATAGGCCCATG GAGGAGATGGAGGAGGAGGCGCGGGTAAAGACGAAGGAGGAAGCGGAGGA ACGGGCGGCGGCGGAGGCGGGTAGTGAGGAGGAAGAAGATGAGGAAGAGG AGGATTGA back to top
|