NO01G02090.1, NO01G02090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02090.1
Unique NameNO01G02090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2273
Alignment locationchr1:534212..537076 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:534212..537076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G02090.1 vs.
Match: EWM29169.1 (aureochrome1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 460.3 bits (1183), Expect = 7.400e-126
Identity = 270/377 (71.62%), Postives = 301/377 (79.84%), Query Frame = 0
Query:  113 MATAVLRQPQCKVAPSQLPVYARARGESSVADLDLNMETLLEEYVLDDDDMGMDFWDGTNTSDTSKDTAPNNISDFDDMDEMASGGGSGRGLGGKTSKISSSSNSSSSSSSGTGKGKKRKAAGGGSSGA--PRKKSHEQMERRRERNRILARRTRLRKKFIFESLQKQVMDLKRQNMKLKRIVKVNMAEQAPEVLGSCTARLPSIVTESMAEASTLLERGDFNLVKSLQTAQQSFVVTDPSLPDNPIVFASQGFLDMTGYSMGQVLGRNCRFLQGPRTDPAAVEKIRKGVATGSDTSVALLNYKADGTAFWNQFFVAPLRDLNGEVVYFVGAQCVIDRPMEEMEEEARVKTKEEAEER--AAAEAGSEEEEDEEEED 486
            MA  +L+QPQCKV  S LPVY+RA+G  S  DLDLNME LLE YVLD+  M +DF DGTN SDTSKDTAPNNISD DD+DEMA G G                +S        GK KKRK +G   SG+  PRKKSHEQMERRRERNRILARRTRLRKKFIFESLQKQVMDLKRQN +LK IVK  MA+QA EVLG+CT RLPSIVTESMAEAST+L+RGDFNL+K+LQT QQSFVVTDPSLPDNPIVFASQGFL+MTGYSM QVLGRNCRFLQGPRTD A V +IRKG+A G+DTSVALLNYK DGT FWNQFFVAPLRDLNGEVVYFVGAQ  IDRP+EE+E++A  + ++EAEER  A   +G  EEE++EEED
Sbjct:    1 MAAIMLQQPQCKVPTSLLPVYSRAQGGQS-GDLDLNMEQLLEAYVLDEG-MDLDFLDGTNISDTSKDTAPNNISDLDDLDEMADGVGI---------------DSEGDIVKTGGKSKKRKTSGWSGSGSSIPRKKSHEQMERRRERNRILARRTRLRKKFIFESLQKQVMDLKRQNSRLKSIVKDKMADQASEVLGACTMRLPSIVTESMAEASTVLDRGDFNLIKALQTTQQSFVVTDPSLPDNPIVFASQGFLEMTGYSMSQVLGRNCRFLQGPRTDQATVAQIRKGIAEGADTSVALLNYKVDGTPFWNQFFVAPLRDLNGEVVYFVGAQSKIDRPLEEIEKDAAERARQEAEERNVAGLASGEGEEEEDEEED 360          
The following BLAST results are available for this feature:
BLAST of NO01G02090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29169.17.400e-12671.62aureochrome1-like protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02090NO01G02090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02090.1NO01G02090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02090.1.cds1NO01G02090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02090.1.cds2NO01G02090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02090.1.cds3NO01G02090.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02090.1.cds4NO01G02090.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02090.1 ID=NO01G02090.1|Name=NO01G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2273bp
AAGCATACCCGGAGGAACGACTTGAGGTTGAGCTCTTATGTGAAGGCCTT
CCCGCAAGCCTTCCTTCATCTCACAGTTCCACGACCACAGGAGCGGCAAG
TACGCTGAACATCGGGTTTGAGAATGAGAGCTTTTGCATGATGGGGAGGT
CGCGGTGGTCTTGGCAGCTCTGGCGAGTGCTTCGCATTATCAGAATGCTG
CAATACCATATGATACCGCACAAAAAGGGCCTTTGGTGCTGCTTCATGAC
CACAACCCCCACCCTCTCACCCCGCAAGCAAGATAAAAAGGAGGAGGATT
TTGATGTCGACAAGGACCTTATCCGCTGCATGTCTAATACACAAGGACCT
CTTTTCCTTCCCTTTCCAACGCACAGCTTTCTTTTTCCCAAGTGCCTGCA
GCGCCAAAAAAGAGCAAGGCTTCCAATAACTCCCACAAAGCCTGCGCCCC
TCCCCACCCTTCCCCTCGTCGTCATGGCTACGGCAGTGCTTCGACAACCT
CAATGCAAGGTGGCCCCCTCCCAACTCCCGGTCTATGCCCGGGCTCGTGG
AGAGAGTTCAGTAGCAGACTTGGACCTAAACATGGAGACTCTGTTGGAGG
AATATGTGTTGGATGACGATGATATGGGCATGGATTTTTGGGACGGGACC
AATACTTCGGACACGAGCAAAGACACGGCCCCGAACAATATCAGCGATTT
TGACGACATGGACGAGATGGCGAGCGGCGGTGGAAGCGGACGAGGACTAG
GGGGAAAGACAAGTAAAATCAGTAGCAGTAGCAACAGCAGCAGCAGCAGC
AGCAGCGGTACGGGCAAAGGGAAGAAGCGCAAGGCCGCCGGTGGGGGTAG
CAGTGGGGCGCCGAGGAAGAAGAGTCACGAGCAGATGGAGCGTAGAAGAG
AAAGGAATCGAATTTTGGCCCGTCGGACGCGTCTGAGGAAGAAATTTATT
TTTGAGAGTTTGCAGAAGCAAGTTATGGATTTGAAACGGCAGAACATGAA
GCTCAAGAGGATCGTGAAGGTGAACATGGCGGAGCAAGCACCGGAGGTCC
TCGGTTCGTGCACGGCCCGTCTGCCTTCAATCGTCACTGAGTCCATGGCA
GAGGCGTCGACACTGCTGGAGCGAGGAGATTTCAATTTGGTCAAGTCGTT
ACAGACGGCCCAGCAGTCGTTTGTGGTGACGGACCCGAGCTTGCCTGATA
ACCCTATCGTATTTGCCTCGCAAGGCTTCCTGGACATGACGGGCTACAGC
ATGGGGCAAGTCCTTGGGCGGAACTGTCGCTTTTTGCAGGGGCCTCGCAC
GGACCCTGCGGCGGTGGAGAAGATTAGGAAGGGAGTGGCGACTGGGTCAG
ATACGTCGGTGGCCCTGTTGAATTATAAGGCGGACGGAACGGCGTTTTGG
AATCAATTTTTTGTGGCGCCTTTGAGGGATTTGAATGGGGAGGTGGTGTA
TTTCGTGGGAGCCCAATGTGTGATTGATAGGCCCATGGAGGAGATGGAGG
AGGAGGCGCGGGTAAAGACGAAGGAGGAAGCGGAGGAACGGGCGGCGGCG
GAGGCGGGTAGTGAGGAGGAAGAAGATGAGGAAGAGGAGGATTGAGAGGG
GGGAGAAGGAGATAAGAGAAGGAGGGAGGAGAGGAGGAAGAGTTCATAAG
TGAGATGTATACAATAACACAAGGTCGAAAACGATAAAGAAGAGAGGAGT
GACATCATGCACGAAAAAGGGAATAGATTCGGAGAGATATTGAGCAGGGA
AAAAGCAAGAAGATGACAAGACGCAGACACGCACATACGGGTTGAAAATG
AGATGGTTTTGTGAGGGCTGTGACGACGTTTTGTCGTGGTTTTTATCCGT
TTTGATTAGCTTTTCGCAGCAGCAGCAGCAGCAGGAGTTTGGAGAAGAAG
AGAGCCGGGCCGTCAGGACTGGGCGAGGCGATGAAGACATGAGACCTTGA
GTAGTGTCAAGAAAGGAAGAAGAAAAAAAGAGAAGAAGAGGAAGATATAT
GAAGAAGGAAAACGACGATGTGTATGTAGTAAGAAGAAGAAGGAGGATGA
GGAGAAGAAGGAAGTGGAAGACAGGGCCAGCCAACAAGCAGAATCTTAAA
AACAGGAAAAGTTAATTCGCAGAGAGATAAGTCGGCAGGACACAAAAGAG
AGAGACTCCAATATCAACATTAGCAGCAACTGAAGTAGCAGGAAGACGAC
TAAAAAATGGAGAGAGTTGCTACTGGTGCATTCCCATCCCCTCGCTGTCC
CTGCTTGCCGGCGGAAATCTAGT
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protein sequence of NO01G02090.1

>NO01G02090.1-protein ID=NO01G02090.1-protein|Name=NO01G02090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MMGRSRWSWQLWRVLRIIRMLQYHMIPHKKGLWCCFMTTTPTLSPRKQDK
KEEDFDVDKDLIRCMSNTQGPLFLPFPTHSFLFPKCLQRQKRARLPITPT
KPAPLPTLPLVVMATAVLRQPQCKVAPSQLPVYARARGESSVADLDLNME
TLLEEYVLDDDDMGMDFWDGTNTSDTSKDTAPNNISDFDDMDEMASGGGS
GRGLGGKTSKISSSSNSSSSSSSGTGKGKKRKAAGGGSSGAPRKKSHEQM
ERRRERNRILARRTRLRKKFIFESLQKQVMDLKRQNMKLKRIVKVNMAEQ
APEVLGSCTARLPSIVTESMAEASTLLERGDFNLVKSLQTAQQSFVVTDP
SLPDNPIVFASQGFLDMTGYSMGQVLGRNCRFLQGPRTDPAAVEKIRKGV
ATGSDTSVALLNYKADGTAFWNQFFVAPLRDLNGEVVYFVGAQCVIDRPM
EEMEEEARVKTKEEAEERAAAEAGSEEEEDEEEED*
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mRNA from alignment at chr1:534212..537076+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02090.1 ID=NO01G02090.1|Name=NO01G02090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2865bp|location=Sequence derived from alignment at chr1:534212..537076+ (Nannochloropsis oceanica)
AAGCATACCCGGAGGAACGACTTGAGGTTGAGCTCTTATGTGAAGGCCTT CCCGCAAGCCTTCCTTCATCTCACAGTTCCACGACCACAGGAGCGGCAAG TACGCTGAACATCGGGTTTGAGAATGAGAGCTTTTGCATGATGGGGAGGT CGCGGTGGTCTTGGCAGCTCTGGCGAGTGCTTCGCATTATCAGAATGCTG CAATACCATATGATACCGCACAAAAAGGGCCTTTGGTGCTGCTTCATGAC CACAACCCCCACCCTCTCACCCCGCAAGCAAGATAAAAAGGAGGAGGATT TTGATGTCGACAAGGACCTTATCCGCTGCATGTCTAATACACAAGGACCT CTTTTCCTTCCCTTTCCAACGCACAGCTTTCTTTTTCCCAAGTGCCTGCA GCGCCAAAAAAGAGCAAGGCTTCCAATAACTCCCACAAAGCCTGCGCCCC TCCCCACCCTTCCCCTCGTCGTCATGGCTACGGCAGTGCTTCGACAACCT CAATGCAAGGTGGCCCCCTCCCAACTCCCGGTCTATGCCCGGGCTCGTGG AGAGAGTTCAGTAGCAGACTTGGTACGTACCCACTAAGCCCCTCTGCCAA TATCAGGAGTAGCAACACCAGCAGGATTAGAGGTAATAGTAGTGATAAGC AATACGACGAGTGGATAGATATCACACCCCTAGGCCACCTATCTATTATT TTTTAGTCCCGTTAAGACACGTATGTCAACGACGCATGCCTAGGCTCATC GTTATTCCCTCCCCTCCCTCCTTCTCTCCTCTCTCGCCATTCTTCAAAAA CACAGGACCTAAACATGGAGACTCTGTTGGAGGAATATGTGTTGGATGAC GATGATATGGGCATGGATTTTTGGGACGGGACCAATACTTCGGACACGAG CAAAGACACGGCCCCGAACAATATCAGCGATGTACGTGTGCCTGTGCCTC TTTCCTCCTCAGCAATTTTATTTGTCAAGCGAGAGGATAAAGTATGCAAT TGCTTAAGTTTTGGATAAAGACTCCGGAGCGGGATCAGAACATTCCATAA TTTTTTTCGACGATCTTCACATCTTTTCAACTCTCCTTTCTCAAACCCCA ACAACCTTAAAAAAATTAACAGTTTGACGACATGGACGAGATGGCGAGCG GCGGTGGAAGCGGACGAGGACTAGGGGGAAAGACAAGTAAAATCAGTAGC AGTAGCAACAGCAGCAGCAGCAGCAGCAGCGGTACGGGCAAAGGGAAGAA GCGCAAGGCCGCCGGTGGGGGTAGCAGTGGGGCGCCGAGGAAGAAGAGTC ACGAGCAGATGGAGCGTAGAAGAGAAAGGAATCGAATTTTGGCCCGTCGG ACGCGTCTGAGGAAGAAATTTATTTTTGAGAGTTTGCAGAAGCAAGTTAT GGATTTGAAACGGCAGAACATGAAGCTCAAGAGGATCGTGAAGGTGAACA TGGCGGAGCAAGCACCGGAGGTCCTCGGTTCGTGCACGGCCCGTCTGCCT TCAATCGTCACTGAGTCCATGGCAGAGGCGTCGACACTGCTGGAGCGAGG AGATTTCAATTTGGTCAAGTCGTTACAGACGGCCCAGCAGTCGTTTGTGG TGACGGACCCGAGCTTGCCTGATAACCGTAAGTGGGGGAGGGAGGGAGGG AGGGAGGGAGGGAGGGAGGGAGGGAGGGATGATGTCATATTTTTATGATT TGCCCCATTGCTCGCCCTTTGCTTATTTTACCTTGCCTCTTTCCTCTCTC CCTCTTCCCACCTCGACATCCCCCCCCCACGCGCCTCAAACACAGCTATC GTATTTGCCTCGCAAGGCTTCCTGGACATGACGGGCTACAGCATGGGGCA AGTCCTTGGGCGGAACTGTCGCTTTTTGCAGGGGCCTCGCACGGACCCTG CGGCGGTGGAGAAGATTAGGAAGGGAGTGGCGACTGGGTCAGATACGTCG GTGGCCCTGTTGAATTATAAGGCGGACGGAACGGCGTTTTGGAATCAATT TTTTGTGGCGCCTTTGAGGGATTTGAATGGGGAGGTGGTGTATTTCGTGG GAGCCCAATGTGTGATTGATAGGCCCATGGAGGAGATGGAGGAGGAGGCG CGGGTAAAGACGAAGGAGGAAGCGGAGGAACGGGCGGCGGCGGAGGCGGG TAGTGAGGAGGAAGAAGATGAGGAAGAGGAGGATTGAGAGGGGGGAGAAG GAGATAAGAGAAGGAGGGAGGAGAGGAGGAAGAGTTCATAAGTGAGATGT ATACAATAACACAAGGTCGAAAACGATAAAGAAGAGAGGAGTGACATCAT GCACGAAAAAGGGAATAGATTCGGAGAGATATTGAGCAGGGAAAAAGCAA GAAGATGACAAGACGCAGACACGCACATACGGGTTGAAAATGAGATGGTT TTGTGAGGGCTGTGACGACGTTTTGTCGTGGTTTTTATCCGTTTTGATTA GCTTTTCGCAGCAGCAGCAGCAGCAGGAGTTTGGAGAAGAAGAGAGCCGG GCCGTCAGGACTGGGCGAGGCGATGAAGACATGAGACCTTGAGTAGTGTC AAGAAAGGAAGAAGAAAAAAAGAGAAGAAGAGGAAGATATATGAAGAAGG AAAACGACGATGTGTATGTAGTAAGAAGAAGAAGGAGGATGAGGAGAAGA AGGAAGTGGAAGACAGGGCCAGCCAACAAGCAGAATCTTAAAAACAGGAA AAGTTAATTCGCAGAGAGATAAGTCGGCAGGACACAAAAGAGAGAGACTC CAATATCAACATTAGCAGCAACTGAAGTAGCAGGAAGACGACTAAAAAAT GGAGAGAGTTGCTACTGGTGCATTCCCATCCCCTCGCTGTCCCTGCTTGC CGGCGGAAATCTAGT
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Coding sequence (CDS) from alignment at chr1:534212..537076+

>NO01G02090.1 ID=NO01G02090.1|Name=NO01G02090.1|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at chr1:534212..537076+ (Nannochloropsis oceanica)
ATGATGGGGAGGTCGCGGTGGTCTTGGCAGCTCTGGCGAGTGCTTCGCAT
TATCAGAATGCTGCAATACCATATGATACCGCACAAAAAGGGCCTTTGGT
GCTGCTTCATGACCACAACCCCCACCCTCTCACCCCGCAAGCAAGATAAA
AAGGAGGAGGATTTTGATGTCGACAAGGACCTTATCCGCTGCATGTCTAA
TACACAAGGACCTCTTTTCCTTCCCTTTCCAACGCACAGCTTTCTTTTTC
CCAAGTGCCTGCAGCGCCAAAAAAGAGCAAGGCTTCCAATAACTCCCACA
AAGCCTGCGCCCCTCCCCACCCTTCCCCTCGTCGTCATGGCTACGGCAGT
GCTTCGACAACCTCAATGCAAGGTGGCCCCCTCCCAACTCCCGGTCTATG
CCCGGGCTCGTGGAGAGAGTTCAGTAGCAGACTTGGACCTAAACATGGAG
ACTCTGTTGGAGGAATATGTGTTGGATGACGATGATATGGGCATGGATTT
TTGGGACGGGACCAATACTTCGGACACGAGCAAAGACACGGCCCCGAACA
ATATCAGCGATTTTGACGACATGGACGAGATGGCGAGCGGCGGTGGAAGC
GGACGAGGACTAGGGGGAAAGACAAGTAAAATCAGTAGCAGTAGCAACAG
CAGCAGCAGCAGCAGCAGCGGTACGGGCAAAGGGAAGAAGCGCAAGGCCG
CCGGTGGGGGTAGCAGTGGGGCGCCGAGGAAGAAGAGTCACGAGCAGATG
GAGCGTAGAAGAGAAAGGAATCGAATTTTGGCCCGTCGGACGCGTCTGAG
GAAGAAATTTATTTTTGAGAGTTTGCAGAAGCAAGTTATGGATTTGAAAC
GGCAGAACATGAAGCTCAAGAGGATCGTGAAGGTGAACATGGCGGAGCAA
GCACCGGAGGTCCTCGGTTCGTGCACGGCCCGTCTGCCTTCAATCGTCAC
TGAGTCCATGGCAGAGGCGTCGACACTGCTGGAGCGAGGAGATTTCAATT
TGGTCAAGTCGTTACAGACGGCCCAGCAGTCGTTTGTGGTGACGGACCCG
AGCTTGCCTGATAACCCTATCGTATTTGCCTCGCAAGGCTTCCTGGACAT
GACGGGCTACAGCATGGGGCAAGTCCTTGGGCGGAACTGTCGCTTTTTGC
AGGGGCCTCGCACGGACCCTGCGGCGGTGGAGAAGATTAGGAAGGGAGTG
GCGACTGGGTCAGATACGTCGGTGGCCCTGTTGAATTATAAGGCGGACGG
AACGGCGTTTTGGAATCAATTTTTTGTGGCGCCTTTGAGGGATTTGAATG
GGGAGGTGGTGTATTTCGTGGGAGCCCAATGTGTGATTGATAGGCCCATG
GAGGAGATGGAGGAGGAGGCGCGGGTAAAGACGAAGGAGGAAGCGGAGGA
ACGGGCGGCGGCGGAGGCGGGTAGTGAGGAGGAAGAAGATGAGGAAGAGG
AGGATTGA
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Synonyms
Publications