NO01G02070.1, NO01G02070.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G02070.1
Unique Name	NO01G02070.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2061
Alignment location	chr1:523527..525587 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:523527..525587 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO01G02070.1 vs.
Match: EWM29195.1 (hypothetical protein Naga_100007g29 [Nannochloropsis gaditana])

HSP 1 Score: 578.2 bits (1489), Expect = 3.400e-161
Identity = 361/672 (53.72%), Postives = 457/672 (68.01%), Query Frame = 0

Query:    9 SMDAAGLAIRTAVTTAAALFLFAPSTTLAFFLSSKPAISRPMTTAASFSSPLSPAGGIKCRDSSSSIFVACPTTTAITAPHPPSLLLLHATAAKEANKATMSPRRRSALEAEFRRLALKTQGLYFVSLSAFYTSGEVAELLKEKLLAKTEVDSFWMGEVGDTDEMADLEGFLAVYDRIDALFEDGEEEEEVEEEEEQQVVDQVKSAPPVGAVVQSLTTAAASAAAAATAAPIVGGMLVDEFMASADVARYLEEDLVTKEEVIGFWRAEAGVESSTSSSSIISTSGGPLLPRLSREATLRVYAKIEELFEDEEKDSPEMIEEAAAERASVPPPPAASAEDAELWAEYTAAMGGPLNSKMDYMTFLKTNELPALMAEELISREEVKAMWDNV----ARGELAINFEGFKALSSDLDDLFMEEEDWDTVAAAEAARVAPESAPARQTAAAMFEAAAAAQSKAEEPEAMQVVGPAKPQLLEVLGSIKFAGLLDDDKATDEYVAALVEAMIEEDANLAVQDELEIAELQKAMEGDWDLAYSTSRTMRYNRGLSGLGKSLPQAEFVAFRQSIAVNGYAFETVYTEKLKTLGRELDVVVEGAWELKDVVSIMDGELCLIMDVLPATIKYGFMNERIETGWKGVRVLNRCELLYLDQDTRVMKGQSSDSYFVFRRRADGS 677
            ++  AGL  + A+  A  L    P T+L    +SKP    P++TA  F +P       K      S  ++        A  P S +++ AT+AKE  K TM+ RR++ LE EFRR++ + Q    +SLS+F+TSGEVAELLKEKLLAK EV+SFW+GE+GD  E ADL+ FLAVY++IDAL    EEEEE E+ E  Q                               A  V G+ ++EF+AS DV+RYLEE+L+++EEV   W AEAG   +++    +          LS E ++RVYA IE+L E+   D+    E++   + +VP       E  EL AEY AA+GG L ++MDY  FL+TNELP L+ E L+SREEV +MWD V      G++ ++F GF+ALSS LDDLF+EE +       E   VAP     RQTAAA ++AAAAAQ+K  EPE +++VGPAKPQL E+L S++ AGLL++DKA D+YV ALVEAM++E+ANLA +DELEIA+LQKAMEG+W+LAYSTSRTMRYNRGLSGLGKSLP+ EF+ F QSIAVNG+A ETVYTE+L+TLGR+L+VVVEGAWELKDVVSIM GELCLIMDVLPATI YGFM ERIETGWKGVRVLNRCELLYLD+D RVMKGQSSDSYFVF RR +G+
Sbjct:   15 AIHTAGLLHQLALVRAF-LPPVVPPTSL--HSTSKPG---PLSTADIFPAPTIQVR--KTWHLGGSWTISSHYIPPTEATSPSSCVVMQATSAKETTKGTMNARRKNMLEEEFRRISKQDQA-DLISLSSFFTSGEVAELLKEKLLAKAEVESFWIGELGDKAEPADLDAFLAVYEKIDAL---FEEEEEDEDVEVGQ-------------------------------AGAVKGITLEEFLASGDVSRYLEENLISREEVESMWAAEAGFRGASAGVRAV----------LSAEGSMRVYAGIEDLLEEVVDDA----EKSDETQTAVPE----ENEGKELRAEYMAAIGGDLEAEMDYAAFLRTNELPDLLEEGLVSREEVGSMWDKVRSERGTGDV-VDFAGFQALSSALDDLFLEEGE-------EEEEVAP-----RQTAAAAYKAAAAAQAKEAEPEGLRIVGPAKPQLKEMLASVRLAGLLEEDKALDDYVGALVEAMLDEEANLAARDELEIADLQKAMEGEWELAYSTSRTMRYNRGLSGLGKSLPKVEFLGFSQSIAVNGFALETVYTERLRTLGRDLNVVVEGAWELKDVVSIMSGELCLIMDVLPATITYGFMRERIETGWKGVRVLNRCELLYLDEDLRVMKGQSSDSYFVFSRRTEGA 612

The following BLAST results are available for this feature:

BLAST of NO01G02070.1 vs.

BLAST of NO01G02070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM29195.1	3.400e-161	53.72	hypothetical protein Naga_100007g29 [Nannochlorops...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO01G02070	NO01G02070	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO01G02070.1	NO01G02070.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO01G02070.1.cds1	NO01G02070.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr1:523527..525587+
coding sequence from alignment at chr1:523527..525587+

mRNA sequence

>NO01G02070.1 ID=NO01G02070.1|Name=NO01G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2061bp
ATGGATAACAGCAGACGGCGTGCATCGATGGATGCGGCCGGACTAGCTAT
CCGCACAGCCGTCACTACGGCAGCCGCGCTATTCCTCTTCGCCCCTTCGA
CTACTCTAGCCTTCTTCCTCTCCTCCAAACCCGCAATCTCAAGGCCCATG
ACGACGGCAGCATCATTTTCCTCACCGCTATCACCAGCAGGCGGAATAAA
ATGTCGTGATAGTTCTTCATCTATATTTGTAGCCTGTCCCACCACGACGG
CAATCACCGCCCCTCACCCTCCCTCTCTTCTGCTCCTGCATGCTACCGCT
GCCAAGGAAGCCAACAAGGCCACAATGAGTCCTCGGAGAAGAAGTGCACT
GGAGGCTGAATTCCGACGACTGGCACTGAAGACCCAAGGCTTATATTTTG
TGTCCTTATCTGCCTTTTATACAAGTGGAGAGGTCGCGGAATTGTTGAAG
GAGAAGCTGCTGGCAAAGACGGAGGTGGATTCGTTTTGGATGGGAGAGGT
GGGGGATACGGACGAGATGGCGGACCTTGAGGGGTTTCTTGCAGTCTACG
ATAGGATTGATGCATTGTTTGAGGATGGTGAGGAGGAAGAAGAGGTAGAA
GAAGAGGAAGAGCAGCAGGTGGTTGACCAAGTCAAGTCGGCTCCGCCTGT
TGGGGCGGTGGTGCAGTCTCTTACCACAGCAGCTGCTTCTGCTGCTGCTG
CTGCGACAGCCGCACCAATTGTGGGAGGGATGTTGGTGGACGAATTTATG
GCCTCGGCAGACGTGGCTCGATACTTAGAAGAGGACTTGGTCACCAAAGA
GGAGGTCATCGGATTCTGGCGGGCCGAGGCAGGGGTGGAATCGAGCACCA
GCAGCAGCAGCATTATCAGCACCAGTGGTGGCCCTTTGCTTCCACGCTTG
TCCCGCGAAGCCACTCTGAGGGTATATGCAAAGATCGAGGAACTTTTTGA
GGACGAGGAGAAGGACTCTCCAGAAATGATCGAAGAAGCAGCAGCGGAGC
GTGCCTCCGTCCCTCCTCCCCCCGCGGCGTCTGCAGAAGATGCAGAACTC
TGGGCAGAGTATACGGCAGCGATGGGCGGGCCTTTGAATAGTAAAATGGA
TTACATGACCTTTTTGAAGACAAACGAGCTCCCTGCATTGATGGCGGAAG
AGCTCATCTCTCGAGAAGAGGTGAAAGCAATGTGGGACAATGTCGCACGA
GGCGAGCTCGCTATCAATTTCGAAGGCTTCAAAGCTCTATCTTCTGACTT
GGATGACTTATTCATGGAGGAAGAAGATTGGGATACAGTAGCAGCAGCAG
AGGCAGCACGAGTGGCCCCAGAATCGGCGCCGGCTCGGCAGACGGCTGCA
GCGATGTTCGAAGCGGCGGCGGCGGCGCAGAGCAAGGCGGAGGAGCCGGA
GGCGATGCAGGTGGTGGGCCCGGCGAAGCCCCAGCTCTTGGAAGTGCTGG
GGTCGATTAAATTTGCCGGGTTGTTGGATGACGATAAGGCGACAGATGAA
TATGTGGCGGCGTTGGTGGAGGCCATGATAGAAGAAGACGCTAACTTGGC
TGTGCAGGACGAGTTGGAGATTGCAGAGTTGCAGAAGGCGATGGAGGGGG
ATTGGGATTTGGCATATAGCACATCGAGGACAATGAGGTATAATCGGGGA
TTGAGCGGGCTGGGCAAGTCATTGCCGCAGGCAGAATTTGTGGCGTTTCG
GCAGTCGATTGCGGTAAATGGATATGCGTTTGAGACAGTGTATACGGAGA
AGCTGAAGACATTGGGGAGGGAGTTGGACGTGGTGGTGGAGGGTGCGTGG
GAATTGAAAGACGTCGTTTCGATCATGGATGGAGAGCTATGTTTGATCAT
GGATGTGTTGCCAGCGACGATCAAGTACGGCTTTATGAATGAACGAATTG
AGACGGGGTGGAAAGGTGTAAGGGTTTTGAATCGGTGTGAGCTGTTGTAT
TTGGATCAAGACACCCGCGTGATGAAAGGGCAGTCGTCTGATTCCTATTT
TGTGTTCCGCCGACGGGCGGATGGTAGTACAACGATTAAAGCATGGAATA
AGGGGTCATAA

protein sequence of NO01G02070.1

>NO01G02070.1-protein ID=NO01G02070.1-protein|Name=NO01G02070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=687bp
MDNSRRRASMDAAGLAIRTAVTTAAALFLFAPSTTLAFFLSSKPAISRPM
TTAASFSSPLSPAGGIKCRDSSSSIFVACPTTTAITAPHPPSLLLLHATA
AKEANKATMSPRRRSALEAEFRRLALKTQGLYFVSLSAFYTSGEVAELLK
EKLLAKTEVDSFWMGEVGDTDEMADLEGFLAVYDRIDALFEDGEEEEEVE
EEEEQQVVDQVKSAPPVGAVVQSLTTAAASAAAAATAAPIVGGMLVDEFM
ASADVARYLEEDLVTKEEVIGFWRAEAGVESSTSSSSIISTSGGPLLPRL
SREATLRVYAKIEELFEDEEKDSPEMIEEAAAERASVPPPPAASAEDAEL
WAEYTAAMGGPLNSKMDYMTFLKTNELPALMAEELISREEVKAMWDNVAR
GELAINFEGFKALSSDLDDLFMEEEDWDTVAAAEAARVAPESAPARQTAA
AMFEAAAAAQSKAEEPEAMQVVGPAKPQLLEVLGSIKFAGLLDDDKATDE
YVAALVEAMIEEDANLAVQDELEIAELQKAMEGDWDLAYSTSRTMRYNRG
LSGLGKSLPQAEFVAFRQSIAVNGYAFETVYTEKLKTLGRELDVVVEGAW
ELKDVVSIMDGELCLIMDVLPATIKYGFMNERIETGWKGVRVLNRCELLY
LDQDTRVMKGQSSDSYFVFRRRADGSTTIKAWNKGS*

mRNA from alignment at chr1:523527..525587+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO01G02070.1 ID=NO01G02070.1|Name=NO01G02070.1|organism=Nannochloropsis oceanica|type=mRNA|length=2061bp|location=Sequence derived from alignment at chr1:523527..525587+ (Nannochloropsis oceanica)
ATGGATAACAGCAGACGGCGTGCATCGATGGATGCGGCCGGACTAGCTAT
CCGCACAGCCGTCACTACGGCAGCCGCGCTATTCCTCTTCGCCCCTTCGA
CTACTCTAGCCTTCTTCCTCTCCTCCAAACCCGCAATCTCAAGGCCCATG
ACGACGGCAGCATCATTTTCCTCACCGCTATCACCAGCAGGCGGAATAAA
ATGTCGTGATAGTTCTTCATCTATATTTGTAGCCTGTCCCACCACGACGG
CAATCACCGCCCCTCACCCTCCCTCTCTTCTGCTCCTGCATGCTACCGCT
GCCAAGGAAGCCAACAAGGCCACAATGAGTCCTCGGAGAAGAAGTGCACT
GGAGGCTGAATTCCGACGACTGGCACTGAAGACCCAAGGCTTATATTTTG
TGTCCTTATCTGCCTTTTATACAAGTGGAGAGGTCGCGGAATTGTTGAAG
GAGAAGCTGCTGGCAAAGACGGAGGTGGATTCGTTTTGGATGGGAGAGGT
GGGGGATACGGACGAGATGGCGGACCTTGAGGGGTTTCTTGCAGTCTACG
ATAGGATTGATGCATTGTTTGAGGATGGTGAGGAGGAAGAAGAGGTAGAA
GAAGAGGAAGAGCAGCAGGTGGTTGACCAAGTCAAGTCGGCTCCGCCTGT
TGGGGCGGTGGTGCAGTCTCTTACCACAGCAGCTGCTTCTGCTGCTGCTG
CTGCGACAGCCGCACCAATTGTGGGAGGGATGTTGGTGGACGAATTTATG
GCCTCGGCAGACGTGGCTCGATACTTAGAAGAGGACTTGGTCACCAAAGA
GGAGGTCATCGGATTCTGGCGGGCCGAGGCAGGGGTGGAATCGAGCACCA
GCAGCAGCAGCATTATCAGCACCAGTGGTGGCCCTTTGCTTCCACGCTTG
TCCCGCGAAGCCACTCTGAGGGTATATGCAAAGATCGAGGAACTTTTTGA
GGACGAGGAGAAGGACTCTCCAGAAATGATCGAAGAAGCAGCAGCGGAGC
GTGCCTCCGTCCCTCCTCCCCCCGCGGCGTCTGCAGAAGATGCAGAACTC
TGGGCAGAGTATACGGCAGCGATGGGCGGGCCTTTGAATAGTAAAATGGA
TTACATGACCTTTTTGAAGACAAACGAGCTCCCTGCATTGATGGCGGAAG
AGCTCATCTCTCGAGAAGAGGTGAAAGCAATGTGGGACAATGTCGCACGA
GGCGAGCTCGCTATCAATTTCGAAGGCTTCAAAGCTCTATCTTCTGACTT
GGATGACTTATTCATGGAGGAAGAAGATTGGGATACAGTAGCAGCAGCAG
AGGCAGCACGAGTGGCCCCAGAATCGGCGCCGGCTCGGCAGACGGCTGCA
GCGATGTTCGAAGCGGCGGCGGCGGCGCAGAGCAAGGCGGAGGAGCCGGA
GGCGATGCAGGTGGTGGGCCCGGCGAAGCCCCAGCTCTTGGAAGTGCTGG
GGTCGATTAAATTTGCCGGGTTGTTGGATGACGATAAGGCGACAGATGAA
TATGTGGCGGCGTTGGTGGAGGCCATGATAGAAGAAGACGCTAACTTGGC
TGTGCAGGACGAGTTGGAGATTGCAGAGTTGCAGAAGGCGATGGAGGGGG
ATTGGGATTTGGCATATAGCACATCGAGGACAATGAGGTATAATCGGGGA
TTGAGCGGGCTGGGCAAGTCATTGCCGCAGGCAGAATTTGTGGCGTTTCG
GCAGTCGATTGCGGTAAATGGATATGCGTTTGAGACAGTGTATACGGAGA
AGCTGAAGACATTGGGGAGGGAGTTGGACGTGGTGGTGGAGGGTGCGTGG
GAATTGAAAGACGTCGTTTCGATCATGGATGGAGAGCTATGTTTGATCAT
GGATGTGTTGCCAGCGACGATCAAGTACGGCTTTATGAATGAACGAATTG
AGACGGGGTGGAAAGGTGTAAGGGTTTTGAATCGGTGTGAGCTGTTGTAT
TTGGATCAAGACACCCGCGTGATGAAAGGGCAGTCGTCTGATTCCTATTT
TGTGTTCCGCCGACGGGCGGATGGTAGTACAACGATTAAAGCATGGAATA
AGGGGTCATAA

Coding sequence (CDS) from alignment at chr1:523527..525587+

>NO01G02070.1 ID=NO01G02070.1|Name=NO01G02070.1|organism=Nannochloropsis oceanica|type=CDS|length=2061bp|location=Sequence derived from alignment at chr1:523527..525587+ (Nannochloropsis oceanica)
ATGGATAACAGCAGACGGCGTGCATCGATGGATGCGGCCGGACTAGCTAT
CCGCACAGCCGTCACTACGGCAGCCGCGCTATTCCTCTTCGCCCCTTCGA
CTACTCTAGCCTTCTTCCTCTCCTCCAAACCCGCAATCTCAAGGCCCATG
ACGACGGCAGCATCATTTTCCTCACCGCTATCACCAGCAGGCGGAATAAA
ATGTCGTGATAGTTCTTCATCTATATTTGTAGCCTGTCCCACCACGACGG
CAATCACCGCCCCTCACCCTCCCTCTCTTCTGCTCCTGCATGCTACCGCT
GCCAAGGAAGCCAACAAGGCCACAATGAGTCCTCGGAGAAGAAGTGCACT
GGAGGCTGAATTCCGACGACTGGCACTGAAGACCCAAGGCTTATATTTTG
TGTCCTTATCTGCCTTTTATACAAGTGGAGAGGTCGCGGAATTGTTGAAG
GAGAAGCTGCTGGCAAAGACGGAGGTGGATTCGTTTTGGATGGGAGAGGT
GGGGGATACGGACGAGATGGCGGACCTTGAGGGGTTTCTTGCAGTCTACG
ATAGGATTGATGCATTGTTTGAGGATGGTGAGGAGGAAGAAGAGGTAGAA
GAAGAGGAAGAGCAGCAGGTGGTTGACCAAGTCAAGTCGGCTCCGCCTGT
TGGGGCGGTGGTGCAGTCTCTTACCACAGCAGCTGCTTCTGCTGCTGCTG
CTGCGACAGCCGCACCAATTGTGGGAGGGATGTTGGTGGACGAATTTATG
GCCTCGGCAGACGTGGCTCGATACTTAGAAGAGGACTTGGTCACCAAAGA
GGAGGTCATCGGATTCTGGCGGGCCGAGGCAGGGGTGGAATCGAGCACCA
GCAGCAGCAGCATTATCAGCACCAGTGGTGGCCCTTTGCTTCCACGCTTG
TCCCGCGAAGCCACTCTGAGGGTATATGCAAAGATCGAGGAACTTTTTGA
GGACGAGGAGAAGGACTCTCCAGAAATGATCGAAGAAGCAGCAGCGGAGC
GTGCCTCCGTCCCTCCTCCCCCCGCGGCGTCTGCAGAAGATGCAGAACTC
TGGGCAGAGTATACGGCAGCGATGGGCGGGCCTTTGAATAGTAAAATGGA
TTACATGACCTTTTTGAAGACAAACGAGCTCCCTGCATTGATGGCGGAAG
AGCTCATCTCTCGAGAAGAGGTGAAAGCAATGTGGGACAATGTCGCACGA
GGCGAGCTCGCTATCAATTTCGAAGGCTTCAAAGCTCTATCTTCTGACTT
GGATGACTTATTCATGGAGGAAGAAGATTGGGATACAGTAGCAGCAGCAG
AGGCAGCACGAGTGGCCCCAGAATCGGCGCCGGCTCGGCAGACGGCTGCA
GCGATGTTCGAAGCGGCGGCGGCGGCGCAGAGCAAGGCGGAGGAGCCGGA
GGCGATGCAGGTGGTGGGCCCGGCGAAGCCCCAGCTCTTGGAAGTGCTGG
GGTCGATTAAATTTGCCGGGTTGTTGGATGACGATAAGGCGACAGATGAA
TATGTGGCGGCGTTGGTGGAGGCCATGATAGAAGAAGACGCTAACTTGGC
TGTGCAGGACGAGTTGGAGATTGCAGAGTTGCAGAAGGCGATGGAGGGGG
ATTGGGATTTGGCATATAGCACATCGAGGACAATGAGGTATAATCGGGGA
TTGAGCGGGCTGGGCAAGTCATTGCCGCAGGCAGAATTTGTGGCGTTTCG
GCAGTCGATTGCGGTAAATGGATATGCGTTTGAGACAGTGTATACGGAGA
AGCTGAAGACATTGGGGAGGGAGTTGGACGTGGTGGTGGAGGGTGCGTGG
GAATTGAAAGACGTCGTTTCGATCATGGATGGAGAGCTATGTTTGATCAT
GGATGTGTTGCCAGCGACGATCAAGTACGGCTTTATGAATGAACGAATTG
AGACGGGGTGGAAAGGTGTAAGGGTTTTGAATCGGTGTGAGCTGTTGTAT
TTGGATCAAGACACCCGCGTGATGAAAGGGCAGTCGTCTGATTCCTATTT
TGTGTTCCGCCGACGGGCGGATGGTAGTACAACGATTAAAGCATGGAATA
AGGGGTCATAA

Synonyms

Publications