NO01G02040.1, NO01G02040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02040.1
Unique NameNO01G02040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1394
Alignment locationchr1:517053..518446 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:517053..518446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G02040.1 vs.
Match: EWM29127.1 (hypothetical protein Naga_100007g27 [Nannochloropsis gaditana])

HSP 1 Score: 201.8 bits (512), Expect = 2.500e-48
Identity = 107/187 (57.22%), Postives = 137/187 (73.26%), Query Frame = 0
Query:   72 LEAALYDGILAAFQSAGANLLQPPKVETQEGNLSYMVRARHGLDLYELKLSSQRHFVLVRAARSLGAFGQGGVAATGQTHALMDVSMPLIGQVYTLMLDLNRYVVRLADDSVALVNETVLLGNLNDNIFGKYGLEAHTTMPRPMDARGRGGGKRKVIQHWLGNPTTILFASVVMIVAALAIVRRPRK 259
            +EA LYDG + A QSAGA +L+PP VET +GNLSY +RARHG+DLYE+ LSSQR+FVLVRA +   AF +GG AA  +    +D+++PLIGQVYTLMLD+NRYVV LAD S ALVNET+LL NLN+NIFGK+GLEA TT  + +++     G+R +    L  PTTIL+  V + V A+  +R  RK
Sbjct:    1 MEAKLYDGTVVALQSAGARVLRPPAVETHDGNLSYTIRARHGIDLYEIHLSSQRNFVLVRATQCPSAFDKGGSAANERLCTALDLTVPLIGQVYTLMLDINRYVVHLADGSTALVNETLLLANLNENIFGKFGLEALTTDLKLLESHAL--GRRGLWGTGLSLPTTILYGGVAITVLAIVYLRFRRK 185          
The following BLAST results are available for this feature:
BLAST of NO01G02040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29127.12.500e-4857.22hypothetical protein Naga_100007g27 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02040NO01G02040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02040.1NO01G02040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02040.1.cds1NO01G02040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02040.1 ID=NO01G02040.1|Name=NO01G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1394bp
TTATGGGCTTGGGCAGGCGGGATGTAGAAGTGTGCTGCTCCGACACGTCG
GTTTTTGGCGAGTGGGAGCAGCAGTAGATCCCTTGGATCACCCACTGAGC
GGCCCAACACCCATCACCAACCCTGCAGCCTCACACTTCCCTGGTCGACA
TCATTACCAATGACTCTTCGTCGAATGAATGGGAATGAGGGGAACCTGCA
GGTACATTATTTGAACCGAGAATTTATTCTCTCAACCAATGGTGTTTGTC
CGCCCGAAAGGCGCATCAACATCAAATCATCATATTATACAAAAACTACG
GCCCTCCTCGACGACGGTGGCTTCCCTTAAACAAGCTCCAGGGGAGGGTG
CAATCTATTGCTGACAATTTTTCACCCTCGCCAGTCGCTGCATTCAGATT
AGATAATAACTCCATCAGATCTTCCTGGGAGTCCGCACAAAACTCACAGA
CATAACCAGGGGAAGATCATGGCCACCGCCAGCGCAAACGACAAACCTCC
ACCCTTTGACTTTGCGGCCGCGAATGCCTTCAAACTCCAGCAGGCCAAGG
AGCTTTTAGAGCAGGAAGAAGCCAGGAATCCACCTCTCGCTGACGAAGGG
GCAGCAGCTATCGCCTCTGGAAAAGGATACAGTCTGAAGCCGGTGGTGGG
CAACGCGCCGGGGGCAAGTCAAGGCCTGGTGCTGGAAGCGGCGCTCTACG
ACGGAATTTTGGCCGCATTTCAATCCGCGGGCGCAAATTTGCTCCAGCCA
CCCAAGGTCGAGACGCAAGAAGGCAACCTCTCTTACATGGTTCGTGCCCG
TCATGGCCTGGACTTATACGAGCTCAAGCTCTCATCACAGCGGCATTTTG
TACTCGTCCGCGCGGCGCGAAGCTTGGGCGCATTTGGCCAAGGTGGAGTC
GCCGCTACAGGACAGACACACGCGCTTATGGATGTCTCGATGCCTTTGAT
TGGGCAAGTATACACCCTCATGCTCGACTTAAATCGCTACGTCGTGCGTT
TGGCCGACGATTCGGTTGCCTTAGTAAATGAGACTGTGCTGTTGGGTAAT
TTGAATGACAATATTTTCGGTAAGTACGGTTTGGAGGCTCACACGACGAT
GCCAAGGCCGATGGATGCAAGGGGAAGAGGAGGAGGGAAAAGAAAAGTCA
TTCAACACTGGTTAGGCAACCCCACCACTATCCTCTTTGCCTCTGTGGTC
ATGATCGTGGCCGCTCTCGCCATTGTCCGAAGGCCAAGAAAGTAGAAAGG
GAAAGTAGTATCGTGACGCGAGTTAAAGAACAACTATTTAATGTCGGAAG
TGCTGTAATACTCATTCTCTGTGATTTCTCCCTCCCGGCTTAACACTCAC
ATACGCTCTCACGCTTTTGTTGATCGCTATCTATCAAGCTGAAT
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protein sequence of NO01G02040.1

>NO01G02040.1-protein ID=NO01G02040.1-protein|Name=NO01G02040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MATASANDKPPPFDFAAANAFKLQQAKELLEQEEARNPPLADEGAAAIAS
GKGYSLKPVVGNAPGASQGLVLEAALYDGILAAFQSAGANLLQPPKVETQ
EGNLSYMVRARHGLDLYELKLSSQRHFVLVRAARSLGAFGQGGVAATGQT
HALMDVSMPLIGQVYTLMLDLNRYVVRLADDSVALVNETVLLGNLNDNIF
GKYGLEAHTTMPRPMDARGRGGGKRKVIQHWLGNPTTILFASVVMIVAAL
AIVRRPRK*
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mRNA from alignment at chr1:517053..518446-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02040.1 ID=NO01G02040.1|Name=NO01G02040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1394bp|location=Sequence derived from alignment at chr1:517053..518446- (Nannochloropsis oceanica)
TTATGGGCTTGGGCAGGCGGGATGTAGAAGTGTGCTGCTCCGACACGTCG GTTTTTGGCGAGTGGGAGCAGCAGTAGATCCCTTGGATCACCCACTGAGC GGCCCAACACCCATCACCAACCCTGCAGCCTCACACTTCCCTGGTCGACA TCATTACCAATGACTCTTCGTCGAATGAATGGGAATGAGGGGAACCTGCA GGTACATTATTTGAACCGAGAATTTATTCTCTCAACCAATGGTGTTTGTC CGCCCGAAAGGCGCATCAACATCAAATCATCATATTATACAAAAACTACG GCCCTCCTCGACGACGGTGGCTTCCCTTAAACAAGCTCCAGGGGAGGGTG CAATCTATTGCTGACAATTTTTCACCCTCGCCAGTCGCTGCATTCAGATT AGATAATAACTCCATCAGATCTTCCTGGGAGTCCGCACAAAACTCACAGA CATAACCAGGGGAAGATCATGGCCACCGCCAGCGCAAACGACAAACCTCC ACCCTTTGACTTTGCGGCCGCGAATGCCTTCAAACTCCAGCAGGCCAAGG AGCTTTTAGAGCAGGAAGAAGCCAGGAATCCACCTCTCGCTGACGAAGGG GCAGCAGCTATCGCCTCTGGAAAAGGATACAGTCTGAAGCCGGTGGTGGG CAACGCGCCGGGGGCAAGTCAAGGCCTGGTGCTGGAAGCGGCGCTCTACG ACGGAATTTTGGCCGCATTTCAATCCGCGGGCGCAAATTTGCTCCAGCCA CCCAAGGTCGAGACGCAAGAAGGCAACCTCTCTTACATGGTTCGTGCCCG TCATGGCCTGGACTTATACGAGCTCAAGCTCTCATCACAGCGGCATTTTG TACTCGTCCGCGCGGCGCGAAGCTTGGGCGCATTTGGCCAAGGTGGAGTC GCCGCTACAGGACAGACACACGCGCTTATGGATGTCTCGATGCCTTTGAT TGGGCAAGTATACACCCTCATGCTCGACTTAAATCGCTACGTCGTGCGTT TGGCCGACGATTCGGTTGCCTTAGTAAATGAGACTGTGCTGTTGGGTAAT TTGAATGACAATATTTTCGGTAAGTACGGTTTGGAGGCTCACACGACGAT GCCAAGGCCGATGGATGCAAGGGGAAGAGGAGGAGGGAAAAGAAAAGTCA TTCAACACTGGTTAGGCAACCCCACCACTATCCTCTTTGCCTCTGTGGTC ATGATCGTGGCCGCTCTCGCCATTGTCCGAAGGCCAAGAAAGTAGAAAGG GAAAGTAGTATCGTGACGCGAGTTAAAGAACAACTATTTAATGTCGGAAG TGCTGTAATACTCATTCTCTGTGATTTCTCCCTCCCGGCTTAACACTCAC ATACGCTCTCACGCTTTTGTTGATCGCTATCTATCAAGCTGAAT
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Coding sequence (CDS) from alignment at chr1:517053..518446-

>NO01G02040.1 ID=NO01G02040.1|Name=NO01G02040.1|organism=Nannochloropsis oceanica|type=CDS|length=777bp|location=Sequence derived from alignment at chr1:517053..518446- (Nannochloropsis oceanica)
ATGGCCACCGCCAGCGCAAACGACAAACCTCCACCCTTTGACTTTGCGGC
CGCGAATGCCTTCAAACTCCAGCAGGCCAAGGAGCTTTTAGAGCAGGAAG
AAGCCAGGAATCCACCTCTCGCTGACGAAGGGGCAGCAGCTATCGCCTCT
GGAAAAGGATACAGTCTGAAGCCGGTGGTGGGCAACGCGCCGGGGGCAAG
TCAAGGCCTGGTGCTGGAAGCGGCGCTCTACGACGGAATTTTGGCCGCAT
TTCAATCCGCGGGCGCAAATTTGCTCCAGCCACCCAAGGTCGAGACGCAA
GAAGGCAACCTCTCTTACATGGTTCGTGCCCGTCATGGCCTGGACTTATA
CGAGCTCAAGCTCTCATCACAGCGGCATTTTGTACTCGTCCGCGCGGCGC
GAAGCTTGGGCGCATTTGGCCAAGGTGGAGTCGCCGCTACAGGACAGACA
CACGCGCTTATGGATGTCTCGATGCCTTTGATTGGGCAAGTATACACCCT
CATGCTCGACTTAAATCGCTACGTCGTGCGTTTGGCCGACGATTCGGTTG
CCTTAGTAAATGAGACTGTGCTGTTGGGTAATTTGAATGACAATATTTTC
GGTAAGTACGGTTTGGAGGCTCACACGACGATGCCAAGGCCGATGGATGC
AAGGGGAAGAGGAGGAGGGAAAAGAAAAGTCATTCAACACTGGTTAGGCA
ACCCCACCACTATCCTCTTTGCCTCTGTGGTCATGATCGTGGCCGCTCTC
GCCATTGTCCGAAGGCCAAGAAAGTAG
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Synonyms
Publications