NO01G02030.1, NO01G02030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G02030.1
Unique NameNO01G02030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1664
Alignment locationchr1:515182..517044 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:515182..517044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO01G02030.1 vs.
Match: EWM29185.1 (nuclear lim factor interactor-interacting protein cleavage-specific form [Nannochloropsis gaditana])

HSP 1 Score: 471.5 bits (1212), Expect = 3.000e-129
Identity = 262/432 (60.65%), Postives = 312/432 (72.22%), Query Frame = 0 
Query:    1 MSDVRRLSAKGAAGGLTIDTDAMPPVIVPPINVAAASPTGPNGTPRNWFGKTSSGLADPRSWLQSPRKWANNRTPTNQGGNATPNTKKMVAYFNSL--PHSEKLMSRQEEEDGFKIGNSSGSSSSSSSSSSSSSTTTATITAASIPRALANLMHQTDKDGKSQHVALS-PSPLHKEQHEQDEQAPVAGL--SLLSRLLRSIHLSDNETATSIPTGTSPPSPTDGTKKQSIKPLSSPTYSLGGIKRNGNGLLGELHPDDVGKKCLVLDLDETLAHSSFQPVEAADFVIPIVIEGTQHQVYVLKRPGVDEFMRRVAKDYEIVIFTASLALYADPLLDQLDLHNVIRHRLYRESCTFFQGSYVKDLTKLGRDVRQCILVDNSPLSYMFQPENAIGCSSYIDATMDKELDVIAAFLEDVRDCEDVREHCRGWRQWG 428
            M++ RR S +G    LTIDT+   P  V P    A +PTG  GTPR+WFG TSSGL DPRSWLQSPRKWANNRTPTNQGGN+TPNT+K+VAYFN+L  P  E+ ++  ++E     GN   S S+S   S+     TAT TA+ IP  LAN+MHQTDKDGKSQHVA   PS   + +H++ E AP       ++ R+ R      ++      T  S     +G  ++ + P         G  ++ + LLGE+H  D GKKCLVLDLDETL HSSFQPVE ADFVIPIVIEG+Q+QVYVLKRPGVD F+ RV +DYE+VIFTASL+LYADPLLD+LD+H VIRHRLYRESCTFFQGSYVKD+ +LGRD+ Q ILVDNSPLSYMFQPENAIGCSSYIDAT D EL VIAAFLEDV++CEDVREHCR WR+WG
Sbjct:    1 MTEQRRASFRG----LTIDTNT--PQHVNPQLSPAVTPTGSQGTPRSWFG-TSSGLTDPRSWLQSPRKWANNRTPTNQGGNSTPNTRKLVAYFNTLHKPKVEEFLNECDDE-----GNGRPSCSTSKKDSA-----TATATASPIPSTLANIMHQTDKDGKSQHVAAQLPSSCQESEHQEVEPAPETSFFSRVVGRMARLNFSDGHDLEVRASTAPSSTLMKNGGHRRQVSPKPVKMSGPKGQSQSPD-LLGEVHAADRGKKCLVLDLDETLIHSSFQPVEDADFVIPIVIEGSQYQVYVLKRPGVDGFLERVGRDYEVVIFTASLSLYADPLLDELDVHKVIRHRLYRESCTFFQGSYVKDMRRLGRDISQVILVDNSPLSYMFQPENAIGCSSYIDATSDVELGVIAAFLEDVKECEDVREHCRNWRKWG 414
The following BLAST results are available for this feature:
BLAST of NO01G02030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29185.13.000e-12960.65nuclear lim factor interactor-interacting protein ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G02030NO01G02030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G02030.1NO01G02030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G02030.1.cds1NO01G02030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G02030.1.cds2NO01G02030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G02030.1 ID=NO01G02030.1|Name=NO01G02030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1664bp
CAGGCTACATTTAAGACAGCCATGTCAGATGTCAGGCGGCTCAGTGCCAA
GGGCGCGGCTGGAGGACTGACCATAGATACTGATGCCATGCCACCCGTCA
TTGTCCCACCTATCAACGTCGCTGCTGCTTCCCCTACCGGACCAAATGGA
ACGCCGAGAAACTGGTTTGGAAAGACGTCGTCAGGTCTCGCAGATCCCCG
CTCCTGGCTGCAGTCACCTCGCAAATGGGCAAACAATCGAACCCCTACGA
ATCAAGGTGGTAACGCCACGCCCAACACAAAAAAAATGGTTGCATATTTC
AATTCGTTGCCCCATTCGGAAAAATTGATGAGCAGACAGGAAGAGGAGGA
TGGATTTAAGATTGGCAACAGCAGCGGTAGCAGCAGCAGCAGCAGCAGCA
GCAGTAGCAGCAGCAGTACCACCACCGCCACCATAACCGCTGCTTCTATC
CCCAGGGCGCTGGCCAATCTCATGCACCAAACGGACAAGGACGGTAAATC
CCAGCACGTAGCTCTCTCACCATCTCCTCTCCATAAGGAACAACACGAGC
AAGACGAGCAGGCACCTGTCGCGGGGCTTTCCCTCTTAAGTCGCCTATTG
CGTTCAATACACCTCTCGGACAACGAGACCGCTACTTCGATTCCTACCGG
TACTTCCCCCCCTTCCCCCACTGATGGGACGAAGAAGCAGTCCATCAAGC
CTTTATCGTCTCCAACCTATTCTTTGGGCGGCATCAAGCGAAACGGAAAT
GGTCTCTTAGGCGAGCTGCACCCAGATGATGTGGGTAAGAAATGCCTGGT
CCTCGACTTGGATGAGACATTGGCCCACTCATCTTTTCAGCCTGTGGAAG
CCGCAGACTTCGTTATTCCAATTGTAATTGAGGGGACACAGCACCAAGTG
TACGTGTTAAAACGCCCGGGGGTCGATGAATTTATGCGGCGCGTGGCAAA
GGATTACGAGATTGTAATTTTTACAGCTTCCCTCGCTTTGTACGCAGATC
CTTTGCTTGATCAATTGGATTTACACAATGTGATCCGGCATCGGCTGTAT
CGGGAGAGTTGCACATTCTTTCAAGGGTCCTATGTGAAGGACTTGACGAA
GCTAGGACGGGATGTGCGTCAGTGTATTTTGGTTGATAATAGCCCATTGT
CTTACATGTTTCAGCCAGAAAATGCGATTGGGTGTAGCTCGTATATTGAC
GCTACGATGGACAAGGAGTTGGATGTGATTGCGGCTTTTTTGGAGGATGT
GAGAGATTGCGAGGATGTGAGGGAGCATTGTCGAGGTTGGCGGCAGTGGG
GGGCGTATGAAAGGAAGGGGAAGGCGTTGGCTGAGAAGAGGAGGGGGGTT
ATTGCAGGATGAAAGCAAGATAACTCGTGGGCATGCGGAAGGGGATAGAT
TTAGCACAGCACAAACGCTGAGCGTCAGGAGATGTAAGAGTGCGGCACAA
GAGGAAGAAGAAGATAGATAGGGTAACAAATTAAGTGAGCAGCGGACAAA
AGAGAAAGCATGGGACGAGTAGGTGGAGAAACTAGGAGAGAAATTAGGAA
GAAAAAAAAGAATGAAGAGGATGCGTGCGTATGTGAATAATTGCATGTCA
TTTCGGTGTGTATGAGGGCACTTTAAATAGAAAAGAATTATAAATATATA
TATATATATATACA
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protein sequence of NO01G02030.1

>NO01G02030.1-protein ID=NO01G02030.1-protein|Name=NO01G02030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MSDVRRLSAKGAAGGLTIDTDAMPPVIVPPINVAAASPTGPNGTPRNWFG
KTSSGLADPRSWLQSPRKWANNRTPTNQGGNATPNTKKMVAYFNSLPHSE
KLMSRQEEEDGFKIGNSSGSSSSSSSSSSSSSTTTATITAASIPRALANL
MHQTDKDGKSQHVALSPSPLHKEQHEQDEQAPVAGLSLLSRLLRSIHLSD
NETATSIPTGTSPPSPTDGTKKQSIKPLSSPTYSLGGIKRNGNGLLGELH
PDDVGKKCLVLDLDETLAHSSFQPVEAADFVIPIVIEGTQHQVYVLKRPG
VDEFMRRVAKDYEIVIFTASLALYADPLLDQLDLHNVIRHRLYRESCTFF
QGSYVKDLTKLGRDVRQCILVDNSPLSYMFQPENAIGCSSYIDATMDKEL
DVIAAFLEDVRDCEDVREHCRGWRQWGAYERKGKALAEKRRGVIAG*
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mRNA from alignment at chr1:515182..517044+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G02030.1 ID=NO01G02030.1|Name=NO01G02030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1863bp|location=Sequence derived from alignment at chr1:515182..517044+ (Nannochloropsis oceanica)
CAGGCTACATTTAAGACAGCCATGTCAGATGTCAGGCGGCTCAGTGCCAA
GGGTAAGTGTCTGCTGCGCCCCTCATCTATCTCCCTTTGTCCCTCATGCA
GGCAAGGATCCACCTCTCTCACTCCCCTGCCTCTTCCACACTCCTCTTTG
CTTGACCCCCACTCCCTTCACTCACACTCCCATGGTTTATACCCTATGCT
TTTTAATTTTCTTTGCTCCACTTACTCAGAATCATACACACAAACACACA
GGCGCGGCTGGAGGACTGACCATAGATACTGATGCCATGCCACCCGTCAT
TGTCCCACCTATCAACGTCGCTGCTGCTTCCCCTACCGGACCAAATGGAA
CGCCGAGAAACTGGTTTGGAAAGACGTCGTCAGGTCTCGCAGATCCCCGC
TCCTGGCTGCAGTCACCTCGCAAATGGGCAAACAATCGAACCCCTACGAA
TCAAGGTGGTAACGCCACGCCCAACACAAAAAAAATGGTTGCATATTTCA
ATTCGTTGCCCCATTCGGAAAAATTGATGAGCAGACAGGAAGAGGAGGAT
GGATTTAAGATTGGCAACAGCAGCGGTAGCAGCAGCAGCAGCAGCAGCAG
CAGTAGCAGCAGCAGTACCACCACCGCCACCATAACCGCTGCTTCTATCC
CCAGGGCGCTGGCCAATCTCATGCACCAAACGGACAAGGACGGTAAATCC
CAGCACGTAGCTCTCTCACCATCTCCTCTCCATAAGGAACAACACGAGCA
AGACGAGCAGGCACCTGTCGCGGGGCTTTCCCTCTTAAGTCGCCTATTGC
GTTCAATACACCTCTCGGACAACGAGACCGCTACTTCGATTCCTACCGGT
ACTTCCCCCCCTTCCCCCACTGATGGGACGAAGAAGCAGTCCATCAAGCC
TTTATCGTCTCCAACCTATTCTTTGGGCGGCATCAAGCGAAACGGAAATG
GTCTCTTAGGCGAGCTGCACCCAGATGATGTGGGTAAGAAATGCCTGGTC
CTCGACTTGGATGAGACATTGGCCCACTCATCTTTTCAGCCTGTGGAAGC
CGCAGACTTCGTTATTCCAATTGTAATTGAGGGGACACAGCACCAAGTGT
ACGTGTTAAAACGCCCGGGGGTCGATGAATTTATGCGGCGCGTGGCAAAG
GATTACGAGATTGTAATTTTTACAGCTTCCCTCGCTTTGTACGCAGATCC
TTTGCTTGATCAATTGGATTTACACAATGTGATCCGGCATCGGCTGTATC
GGGAGAGTTGCACATTCTTTCAAGGGTCCTATGTGAAGGACTTGACGAAG
CTAGGACGGGATGTGCGTCAGTGTATTTTGGTTGATAATAGCCCATTGTC
TTACATGTTTCAGCCAGAAAATGCGATTGGGTGTAGCTCGTATATTGACG
CTACGATGGACAAGGAGTTGGATGTGATTGCGGCTTTTTTGGAGGATGTG
AGAGATTGCGAGGATGTGAGGGAGCATTGTCGAGGTTGGCGGCAGTGGGG
GGCGTATGAAAGGAAGGGGAAGGCGTTGGCTGAGAAGAGGAGGGGGGTTA
TTGCAGGATGAAAGCAAGATAACTCGTGGGCATGCGGAAGGGGATAGATT
TAGCACAGCACAAACGCTGAGCGTCAGGAGATGTAAGAGTGCGGCACAAG
AGGAAGAAGAAGATAGATAGGGTAACAAATTAAGTGAGCAGCGGACAAAA
GAGAAAGCATGGGACGAGTAGGTGGAGAAACTAGGAGAGAAATTAGGAAG
AAAAAAAAGAATGAAGAGGATGCGTGCGTATGTGAATAATTGCATGTCAT
TTCGGTGTGTATGAGGGCACTTTAAATAGAAAAGAATTATAAATATATAT
ATATATATATACA
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Coding sequence (CDS) from alignment at chr1:515182..517044+

>NO01G02030.1 ID=NO01G02030.1|Name=NO01G02030.1|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at chr1:515182..517044+ (Nannochloropsis oceanica)
ATGTCAGATGTCAGGCGGCTCAGTGCCAAGGGCGCGGCTGGAGGACTGAC
CATAGATACTGATGCCATGCCACCCGTCATTGTCCCACCTATCAACGTCG
CTGCTGCTTCCCCTACCGGACCAAATGGAACGCCGAGAAACTGGTTTGGA
AAGACGTCGTCAGGTCTCGCAGATCCCCGCTCCTGGCTGCAGTCACCTCG
CAAATGGGCAAACAATCGAACCCCTACGAATCAAGGTGGTAACGCCACGC
CCAACACAAAAAAAATGGTTGCATATTTCAATTCGTTGCCCCATTCGGAA
AAATTGATGAGCAGACAGGAAGAGGAGGATGGATTTAAGATTGGCAACAG
CAGCGGTAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGTACCA
CCACCGCCACCATAACCGCTGCTTCTATCCCCAGGGCGCTGGCCAATCTC
ATGCACCAAACGGACAAGGACGGTAAATCCCAGCACGTAGCTCTCTCACC
ATCTCCTCTCCATAAGGAACAACACGAGCAAGACGAGCAGGCACCTGTCG
CGGGGCTTTCCCTCTTAAGTCGCCTATTGCGTTCAATACACCTCTCGGAC
AACGAGACCGCTACTTCGATTCCTACCGGTACTTCCCCCCCTTCCCCCAC
TGATGGGACGAAGAAGCAGTCCATCAAGCCTTTATCGTCTCCAACCTATT
CTTTGGGCGGCATCAAGCGAAACGGAAATGGTCTCTTAGGCGAGCTGCAC
CCAGATGATGTGGGTAAGAAATGCCTGGTCCTCGACTTGGATGAGACATT
GGCCCACTCATCTTTTCAGCCTGTGGAAGCCGCAGACTTCGTTATTCCAA
TTGTAATTGAGGGGACACAGCACCAAGTGTACGTGTTAAAACGCCCGGGG
GTCGATGAATTTATGCGGCGCGTGGCAAAGGATTACGAGATTGTAATTTT
TACAGCTTCCCTCGCTTTGTACGCAGATCCTTTGCTTGATCAATTGGATT
TACACAATGTGATCCGGCATCGGCTGTATCGGGAGAGTTGCACATTCTTT
CAAGGGTCCTATGTGAAGGACTTGACGAAGCTAGGACGGGATGTGCGTCA
GTGTATTTTGGTTGATAATAGCCCATTGTCTTACATGTTTCAGCCAGAAA
ATGCGATTGGGTGTAGCTCGTATATTGACGCTACGATGGACAAGGAGTTG
GATGTGATTGCGGCTTTTTTGGAGGATGTGAGAGATTGCGAGGATGTGAG
GGAGCATTGTCGAGGTTGGCGGCAGTGGGGGGCGTATGAAAGGAAGGGGA
AGGCGTTGGCTGAGAAGAGGAGGGGGGTTATTGCAGGATGA
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Synonyms
Publications