NO01G01990.1, NO01G01990.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01990.1
Unique NameNO01G01990.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2593
Alignment locationchr1:502528..505120 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:502528..505120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G01990.1 vs.
Match: EWM29203.1 (heat shock protein [Nannochloropsis gaditana])

HSP 1 Score: 478.0 bits (1229), Expect = 3.300e-131
Identity = 246/389 (63.24%), Postives = 298/389 (76.61%), Query Frame = 0
Query:   12 ATSTEETRRSKRDLSPFPPSNYHDADASPARRLPPASTAADSQESELEAGLGAKQDVRQRGVPNGGVERSNSGGHAQYHPTSHHSPPGRVAVKSEREMLALLSFEWALMKRGILPSKSPLFFLILWIFVEYVHLIAHNYVYYLQGKLWGADGPPPPLQDLGLMLLADRLPESFEWIIGFATALLCGLMFSLGLLRLTLTNVNWGGPTIDVKTSDGRVKTTLPMPVCLVMRRACQAMSVGMTLRIITFLVTLIPNPAEYCHGSSWDPPAHVGEIFSRVRFTGSCGDLMFSGHTSHGMVLMLVVCKFAPNLRAAKVLAVGSMTLLAASLLAFKAHYSSDVLVAIYVNIMIWWLLPRDAASIKLADLQLDDHLPLPPTPTFLSVPPLSAAAS 401
            A S EE  R  R+ SP PP+ Y D +A      P A TA  S+  +LEAG+ +KQD RQR    G    +  G        SH +    V +KSEREM  LLSFEWAL+K+G+  S+ PLFF +LW+FVEYVHL AHNYVY+LQGK+WG DGPPPPL DLGLMLLADRLP+ +EWIIGFATA+L GLMFSLGLLRLTL +V WGGP I+V+ +D + KTTLPMPV LVM+RACQAMSVGM+LR++TFLVTL+PNPA YCHG  WDPP  VGEIF+R+RFTGSCGDL+FSGHTSHGMVLMLVV ++AP +RAAK L++G+MTLLA SLLAFK+HY+SDVLVA+YVN+MIWWLLP D A + L DL L++  PLP +P F+   P S++ +
Sbjct:   75 AVSREEELR--REASP-PPAAYEDDNALSEPASPAARTARGSRGVDLEAGMNSKQDARQRTFLRG--LETGQGSTGSQIGASHAA--SCVGLKSEREMRNLLSFEWALLKKGVPSSRPPLFFFLLWVFVEYVHLTAHNYVYFLQGKIWGVDGPPPPLPDLGLMLLADRLPDRYEWIIGFATAVLVGLMFSLGLLRLTLAHVKWGGPQIEVRDADNQHKTTLPMPVSLVMQRACQAMSVGMSLRVVTFLVTLVPNPAAYCHGPDWDPPERVGEIFTRIRFTGSCGDLLFSGHTSHGMVLMLVVTRYAPKVRAAKALSIGAMTLLALSLLAFKSHYTSDVLVAVYVNLMIWWLLPTDPARVNLTDLGLNNDFPLPVSPAFVCADPSSSSVT 456          
The following BLAST results are available for this feature:
BLAST of NO01G01990.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29203.13.300e-13163.24heat shock protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01990NO01G01990Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01990.1NO01G01990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01990.1.cds1NO01G01990.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01990.1 ID=NO01G01990.1|Name=NO01G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2593bp
TTTTTTTGCCTCTCATTTTGCGTGTGTCCGAAAGGGGCTTGGACACTGAC
GAACCGACACATCTTGTGTTTTTCCTGGAGACGTACGTGCAGTGATGCTT
TCTACCCTGCTTGGCAATTTGATGACACCAGCAAAGCATCGTGCCCGCGA
CAACCATGCTATCCAGCTTTCCAGACTACTTGGGCGGTGAGTGTCATAAA
GCCAAGTGAGGCTGCCGTGGTCTAAGCCCCTTTGTCGGCATCCGGACCTA
CGGGTTCAACATTGCCAGCAGGCAGCCTTCTCCTTTTCATCAACACTTCC
CCGTGAGGCTTGGCATGGCTGCGTCCTGATACGTTTATATCTCGTCACCA
GCATTGATCATCCTTGCCACCCACCACACAGGTCAGTCCTTCGCCCGACC
ATAAAAGGCGGGACGGGGGGGACCCGGCAACCACGCATTCTTGGCAGCAT
CAACAGCTTGTTTAGTTGGTGGTGCCATAGTGAGAGGGACGCGGCAAGAT
AAAAATTTGCAGCGGGACACCGCTGTCGCGGTGGAAAGAGGAGGATTAGC
AGCACCGATAGCAGTGGCCTCAATTTTGACTACCATCTTCTCATGGAAGA
GGACGAGGACGGGACCAGCACTCCGGCAACCTCCACTGAAGAAACACGCC
GAAGCAAGCGCGACCTATCACCATTTCCCCCATCCAACTACCATGACGCC
GATGCCTCGCCCGCGCGCCGCCTCCCACCAGCCAGCACCGCCGCAGACAG
TCAAGAGAGCGAGCTGGAAGCAGGCTTGGGCGCAAAGCAAGATGTGCGAC
AACGCGGCGTGCCCAATGGCGGTGTGGAGAGAAGCAATTCCGGCGGCCAC
GCCCAGTATCATCCCACCTCCCACCACTCCCCCCCCGGGCGCGTCGCCGT
CAAATCCGAACGTGAAATGCTCGCCTTGCTCTCCTTTGAGTGGGCACTGA
TGAAACGTGGCATTCTTCCGTCGAAATCCCCGCTCTTCTTCCTCATCCTC
TGGATTTTTGTCGAGTACGTCCATCTAATTGCCCACAACTACGTCTATTA
CCTTCAAGGTAAACTCTGGGGTGCTGATGGCCCCCCTCCCCCGTTGCAAG
ATTTGGGTTTGATGCTCCTTGCTGACCGGTTGCCGGAGAGCTTTGAATGG
ATCATTGGCTTTGCGACTGCGTTGTTGTGTGGGCTGATGTTCTCCCTGGG
CCTTCTCCGGCTTACACTCACTAACGTCAACTGGGGGGGGCCTACGATCG
ATGTCAAAACGAGCGATGGCCGGGTCAAGACAACACTACCTATGCCTGTC
TGCTTAGTAATGCGGCGTGCGTGTCAAGCAATGAGCGTGGGAATGACTTT
AAGAATAATTACCTTTCTGGTTACACTAATTCCTAACCCTGCGGAGTACT
GTCATGGGAGCAGCTGGGACCCTCCTGCACATGTTGGGGAGATATTTTCG
CGAGTTAGGTTTACGGGAAGCTGTGGGGATTTGATGTTTTCGGGGCACAC
CTCTCATGGGATGGTGTTGATGCTTGTTGTTTGTAAGTTTGCCCCCAATC
TGAGGGCCGCGAAGGTCTTGGCGGTTGGATCGATGACGTTGCTAGCGGCG
TCGTTGCTTGCATTCAAGGCGCATTATTCCTCCGACGTTCTCGTAGCAAT
CTATGTTAACATCATGATTTGGTGGCTGTTGCCACGGGATGCGGCGAGTA
TCAAACTCGCCGATTTGCAGTTAGATGACCATTTGCCCTTGCCCCCGACG
CCCACGTTTTTGTCGGTGCCGCCGCTGTCAGCTGCAGCTTCGCTTTCGGG
TGTGGGGGAATTGAATACTCCGAATTCTTCGACGTTGTCCTTGTGTAGGG
ATAGGGAAGCAGGGGGTGCAGGAGGAGGACAAGAAGCGGGAAAGGGTGAA
GGGACTTCAAGAAGAGGCAGGAGAAGGGAGGGGGAGGGACAGCCACCAGC
AGCAATTGTGCAACAGGAGGAAGAAGCGGTGCGGAGGCTGGAGGGGGGAT
GCGTGTGAATGAAGTAAGGGATGAAGGCAGAGACGGACTGTTGATGTATG
TAAGAGGGAATTTGAAAATTAGGATATGAAAATGAGAGAATTTATGTATA
CAGAGGGGAAAATCATTTTGGACGGGCACAAATTAAAAAAAATTTAAGAG
ATAGAGAAAGCGAGAGAGATAAAATGAGGGCACCGATGCCGACAGTTTCT
TTGGATGACAGAAGTAGAGATGTGTGTGCGTGTGTGCGTGTGTGCGAGTG
TGTCGGTTGGGTCTGTCAGTCTGTTTCTTTGGATACCCCTTTGCCCCGCA
TTGTTTTTGGTGCTCCTAAGATTGAGATTTCCACAATATCGAGCTTCTAC
ACAATGTCAACGACATTGACGACCACAACAATGACGACGACACACATATA
CACGCGTACACTGACACACATACATTCACACACGACACAAGAAAAGGGGG
AACGATAAGTAGACGTGGGTGCACGTACAATGATTGATTCGGATGGATAT
AATTCGCATGTGTGGCATTCCCTTTTCCTTCGTCTTTCTCTTTCCCCTCG
GCAGACTTCTGAAGAAGTATACCTAAACGAATTCTGTTTTTCA
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protein sequence of NO01G01990.1

>NO01G01990.1-protein ID=NO01G01990.1-protein|Name=NO01G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MEEDEDGTSTPATSTEETRRSKRDLSPFPPSNYHDADASPARRLPPASTA
ADSQESELEAGLGAKQDVRQRGVPNGGVERSNSGGHAQYHPTSHHSPPGR
VAVKSEREMLALLSFEWALMKRGILPSKSPLFFLILWIFVEYVHLIAHNY
VYYLQGKLWGADGPPPPLQDLGLMLLADRLPESFEWIIGFATALLCGLMF
SLGLLRLTLTNVNWGGPTIDVKTSDGRVKTTLPMPVCLVMRRACQAMSVG
MTLRIITFLVTLIPNPAEYCHGSSWDPPAHVGEIFSRVRFTGSCGDLMFS
GHTSHGMVLMLVVCKFAPNLRAAKVLAVGSMTLLAASLLAFKAHYSSDVL
VAIYVNIMIWWLLPRDAASIKLADLQLDDHLPLPPTPTFLSVPPLSAAAS
LSGVGELNTPNSSTLSLCRDREAGGAGGGQEAGKGEGTSRRGRRREGEGQ
PPAAIVQQEEEAVRRLEGGCV*
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mRNA from alignment at chr1:502528..505120+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01990.1 ID=NO01G01990.1|Name=NO01G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=2593bp|location=Sequence derived from alignment at chr1:502528..505120+ (Nannochloropsis oceanica)
TTTTTTTGCCTCTCATTTTGCGTGTGTCCGAAAGGGGCTTGGACACTGAC GAACCGACACATCTTGTGTTTTTCCTGGAGACGTACGTGCAGTGATGCTT TCTACCCTGCTTGGCAATTTGATGACACCAGCAAAGCATCGTGCCCGCGA CAACCATGCTATCCAGCTTTCCAGACTACTTGGGCGGTGAGTGTCATAAA GCCAAGTGAGGCTGCCGTGGTCTAAGCCCCTTTGTCGGCATCCGGACCTA CGGGTTCAACATTGCCAGCAGGCAGCCTTCTCCTTTTCATCAACACTTCC CCGTGAGGCTTGGCATGGCTGCGTCCTGATACGTTTATATCTCGTCACCA GCATTGATCATCCTTGCCACCCACCACACAGGTCAGTCCTTCGCCCGACC ATAAAAGGCGGGACGGGGGGGACCCGGCAACCACGCATTCTTGGCAGCAT CAACAGCTTGTTTAGTTGGTGGTGCCATAGTGAGAGGGACGCGGCAAGAT AAAAATTTGCAGCGGGACACCGCTGTCGCGGTGGAAAGAGGAGGATTAGC AGCACCGATAGCAGTGGCCTCAATTTTGACTACCATCTTCTCATGGAAGA GGACGAGGACGGGACCAGCACTCCGGCAACCTCCACTGAAGAAACACGCC GAAGCAAGCGCGACCTATCACCATTTCCCCCATCCAACTACCATGACGCC GATGCCTCGCCCGCGCGCCGCCTCCCACCAGCCAGCACCGCCGCAGACAG TCAAGAGAGCGAGCTGGAAGCAGGCTTGGGCGCAAAGCAAGATGTGCGAC AACGCGGCGTGCCCAATGGCGGTGTGGAGAGAAGCAATTCCGGCGGCCAC GCCCAGTATCATCCCACCTCCCACCACTCCCCCCCCGGGCGCGTCGCCGT CAAATCCGAACGTGAAATGCTCGCCTTGCTCTCCTTTGAGTGGGCACTGA TGAAACGTGGCATTCTTCCGTCGAAATCCCCGCTCTTCTTCCTCATCCTC TGGATTTTTGTCGAGTACGTCCATCTAATTGCCCACAACTACGTCTATTA CCTTCAAGGTAAACTCTGGGGTGCTGATGGCCCCCCTCCCCCGTTGCAAG ATTTGGGTTTGATGCTCCTTGCTGACCGGTTGCCGGAGAGCTTTGAATGG ATCATTGGCTTTGCGACTGCGTTGTTGTGTGGGCTGATGTTCTCCCTGGG CCTTCTCCGGCTTACACTCACTAACGTCAACTGGGGGGGGCCTACGATCG ATGTCAAAACGAGCGATGGCCGGGTCAAGACAACACTACCTATGCCTGTC TGCTTAGTAATGCGGCGTGCGTGTCAAGCAATGAGCGTGGGAATGACTTT AAGAATAATTACCTTTCTGGTTACACTAATTCCTAACCCTGCGGAGTACT GTCATGGGAGCAGCTGGGACCCTCCTGCACATGTTGGGGAGATATTTTCG CGAGTTAGGTTTACGGGAAGCTGTGGGGATTTGATGTTTTCGGGGCACAC CTCTCATGGGATGGTGTTGATGCTTGTTGTTTGTAAGTTTGCCCCCAATC TGAGGGCCGCGAAGGTCTTGGCGGTTGGATCGATGACGTTGCTAGCGGCG TCGTTGCTTGCATTCAAGGCGCATTATTCCTCCGACGTTCTCGTAGCAAT CTATGTTAACATCATGATTTGGTGGCTGTTGCCACGGGATGCGGCGAGTA TCAAACTCGCCGATTTGCAGTTAGATGACCATTTGCCCTTGCCCCCGACG CCCACGTTTTTGTCGGTGCCGCCGCTGTCAGCTGCAGCTTCGCTTTCGGG TGTGGGGGAATTGAATACTCCGAATTCTTCGACGTTGTCCTTGTGTAGGG ATAGGGAAGCAGGGGGTGCAGGAGGAGGACAAGAAGCGGGAAAGGGTGAA GGGACTTCAAGAAGAGGCAGGAGAAGGGAGGGGGAGGGACAGCCACCAGC AGCAATTGTGCAACAGGAGGAAGAAGCGGTGCGGAGGCTGGAGGGGGGAT GCGTGTGAATGAAGTAAGGGATGAAGGCAGAGACGGACTGTTGATGTATG TAAGAGGGAATTTGAAAATTAGGATATGAAAATGAGAGAATTTATGTATA CAGAGGGGAAAATCATTTTGGACGGGCACAAATTAAAAAAAATTTAAGAG ATAGAGAAAGCGAGAGAGATAAAATGAGGGCACCGATGCCGACAGTTTCT TTGGATGACAGAAGTAGAGATGTGTGTGCGTGTGTGCGTGTGTGCGAGTG TGTCGGTTGGGTCTGTCAGTCTGTTTCTTTGGATACCCCTTTGCCCCGCA TTGTTTTTGGTGCTCCTAAGATTGAGATTTCCACAATATCGAGCTTCTAC ACAATGTCAACGACATTGACGACCACAACAATGACGACGACACACATATA CACGCGTACACTGACACACATACATTCACACACGACACAAGAAAAGGGGG AACGATAAGTAGACGTGGGTGCACGTACAATGATTGATTCGGATGGATAT AATTCGCATGTGTGGCATTCCCTTTTCCTTCGTCTTTCTCTTTCCCCTCG GCAGACTTCTGAAGAAGTATACCTAAACGAATTCTGTTTTTCA
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Coding sequence (CDS) from alignment at chr1:502528..505120+

>NO01G01990.1 ID=NO01G01990.1|Name=NO01G01990.1|organism=Nannochloropsis oceanica|type=CDS|length=1416bp|location=Sequence derived from alignment at chr1:502528..505120+ (Nannochloropsis oceanica)
ATGGAAGAGGACGAGGACGGGACCAGCACTCCGGCAACCTCCACTGAAGA
AACACGCCGAAGCAAGCGCGACCTATCACCATTTCCCCCATCCAACTACC
ATGACGCCGATGCCTCGCCCGCGCGCCGCCTCCCACCAGCCAGCACCGCC
GCAGACAGTCAAGAGAGCGAGCTGGAAGCAGGCTTGGGCGCAAAGCAAGA
TGTGCGACAACGCGGCGTGCCCAATGGCGGTGTGGAGAGAAGCAATTCCG
GCGGCCACGCCCAGTATCATCCCACCTCCCACCACTCCCCCCCCGGGCGC
GTCGCCGTCAAATCCGAACGTGAAATGCTCGCCTTGCTCTCCTTTGAGTG
GGCACTGATGAAACGTGGCATTCTTCCGTCGAAATCCCCGCTCTTCTTCC
TCATCCTCTGGATTTTTGTCGAGTACGTCCATCTAATTGCCCACAACTAC
GTCTATTACCTTCAAGGTAAACTCTGGGGTGCTGATGGCCCCCCTCCCCC
GTTGCAAGATTTGGGTTTGATGCTCCTTGCTGACCGGTTGCCGGAGAGCT
TTGAATGGATCATTGGCTTTGCGACTGCGTTGTTGTGTGGGCTGATGTTC
TCCCTGGGCCTTCTCCGGCTTACACTCACTAACGTCAACTGGGGGGGGCC
TACGATCGATGTCAAAACGAGCGATGGCCGGGTCAAGACAACACTACCTA
TGCCTGTCTGCTTAGTAATGCGGCGTGCGTGTCAAGCAATGAGCGTGGGA
ATGACTTTAAGAATAATTACCTTTCTGGTTACACTAATTCCTAACCCTGC
GGAGTACTGTCATGGGAGCAGCTGGGACCCTCCTGCACATGTTGGGGAGA
TATTTTCGCGAGTTAGGTTTACGGGAAGCTGTGGGGATTTGATGTTTTCG
GGGCACACCTCTCATGGGATGGTGTTGATGCTTGTTGTTTGTAAGTTTGC
CCCCAATCTGAGGGCCGCGAAGGTCTTGGCGGTTGGATCGATGACGTTGC
TAGCGGCGTCGTTGCTTGCATTCAAGGCGCATTATTCCTCCGACGTTCTC
GTAGCAATCTATGTTAACATCATGATTTGGTGGCTGTTGCCACGGGATGC
GGCGAGTATCAAACTCGCCGATTTGCAGTTAGATGACCATTTGCCCTTGC
CCCCGACGCCCACGTTTTTGTCGGTGCCGCCGCTGTCAGCTGCAGCTTCG
CTTTCGGGTGTGGGGGAATTGAATACTCCGAATTCTTCGACGTTGTCCTT
GTGTAGGGATAGGGAAGCAGGGGGTGCAGGAGGAGGACAAGAAGCGGGAA
AGGGTGAAGGGACTTCAAGAAGAGGCAGGAGAAGGGAGGGGGAGGGACAG
CCACCAGCAGCAATTGTGCAACAGGAGGAAGAAGCGGTGCGGAGGCTGGA
GGGGGGATGCGTGTGA
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Synonyms
Publications