NO01G01970.1, NO01G01970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01970.1
Unique NameNO01G01970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length249
Alignment locationchr1:497454..497904 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:497454..497904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G01970.1 vs.
Match: EWM29133.1 (Cytochrome c oxidase assembly protein COX16 [Nannochloropsis gaditana])

HSP 1 Score: 132.1 bits (331), Expect = 7.900e-28
Identity = 64/80 (80.00%), Postives = 76/80 (95.00%), Query Frame = 0
Query:    1 MLSPQLWKKMSAGLPLVVFLAGGSVFLAKFVQGRVEAKDNRLQSKSEREFSIEEEHKQMMARLNPESNYKVVRIHRPEDD 81
            M+S + WKK+SAGLPL+VFL GGS+FLAKFVQGRVEAKD++LQS+SEREFSIEEEHK+MMA+L+PE+ YKVVRIHRPEDD
Sbjct:    1 MISHRAWKKLSAGLPLLVFLTGGSLFLAKFVQGRVEAKDSKLQSRSEREFSIEEEHKRMMAKLDPENAYKVVRIHRPEDD 80          
The following BLAST results are available for this feature:
BLAST of NO01G01970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29133.17.900e-2880.00Cytochrome c oxidase assembly protein COX16 [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01970NO01G01970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01970.1NO01G01970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01970.1.cds1NO01G01970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO01G01970.1.cds2NO01G01970.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01970.1 ID=NO01G01970.1|Name=NO01G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=249bp
ATGCTATCGCCCCAACTGTGGAAGAAGATGAGCGCGGGCTTGCCTTTGGT
TGTCTTTTTGGCGGGCGGCTCTGTTTTCTTGGCCAAGTTTGTTCAAGGTC
GAGTGGAAGCCAAGGATAATCGCCTTCAAAGTAAGAGTGAGCGAGAATTC
AGCATCGAGGAGGAGCATAAGCAAATGATGGCTAGATTGAATCCAGAGAG
TAACTACAAGGTCGTGCGCATCCATCGGCCAGAGGACGACAATGGGTAG
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protein sequence of NO01G01970.1

>NO01G01970.1-protein ID=NO01G01970.1-protein|Name=NO01G01970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MLSPQLWKKMSAGLPLVVFLAGGSVFLAKFVQGRVEAKDNRLQSKSEREF
SIEEEHKQMMARLNPESNYKVVRIHRPEDDNG*
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mRNA from alignment at chr1:497454..497904+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01970.1 ID=NO01G01970.1|Name=NO01G01970.1|organism=Nannochloropsis oceanica|type=mRNA|length=451bp|location=Sequence derived from alignment at chr1:497454..497904+ (Nannochloropsis oceanica)
ATGCTATCGCCCCAACTGTGGAAGAAGATGAGCGCGGGCTTGCCTTTGGT TGTCTTTTTGGCGGGCGGCTCTGTTTTCTTGGCCAAGGTACGAGTGTCGT TGTAAGACCCTCAAGCCCTCTAAATCCTGCCCCTTGCCTTCCCCGCCCCT CTTGGCTAGTTAATACCGCAGCGTTATTTTGCAAGCCACTTGACATCCTT CGTTTAGTTCAACGCACCCATGAAACCGTTGCCTCTAGTTCTTTCCCCTG GTCACACCTTCCCTCCATGTCCCCCTTTCTCATCAACAGTTTGTTCAAGG TCGAGTGGAAGCCAAGGATAATCGCCTTCAAAGTAAGAGTGAGCGAGAAT TCAGCATCGAGGAGGAGCATAAGCAAATGATGGCTAGATTGAATCCAGAG AGTAACTACAAGGTCGTGCGCATCCATCGGCCAGAGGACGACAATGGGTA G
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Coding sequence (CDS) from alignment at chr1:497454..497904+

>NO01G01970.1 ID=NO01G01970.1|Name=NO01G01970.1|organism=Nannochloropsis oceanica|type=CDS|length=249bp|location=Sequence derived from alignment at chr1:497454..497904+ (Nannochloropsis oceanica)
ATGCTATCGCCCCAACTGTGGAAGAAGATGAGCGCGGGCTTGCCTTTGGT
TGTCTTTTTGGCGGGCGGCTCTGTTTTCTTGGCCAAGTTTGTTCAAGGTC
GAGTGGAAGCCAAGGATAATCGCCTTCAAAGTAAGAGTGAGCGAGAATTC
AGCATCGAGGAGGAGCATAAGCAAATGATGGCTAGATTGAATCCAGAGAG
TAACTACAAGGTCGTGCGCATCCATCGGCCAGAGGACGACAATGGGTAG
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Synonyms
Publications