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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr1 | genome | chr1:492886..494883 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G01950.1 vs.
Match: EWM29137.1 (major facilitator superfamily [Nannochloropsis gaditana]) HSP 1 Score: 421.4 bits (1082), Expect = 5.200e-114 Identity = 231/349 (66.19%), Postives = 276/349 (79.08%), Query Frame = 0
Query: 1 MVKTYNTLPLPFPSGSEERRPTTAPTSAKSHLHLFQTLPAETDDSDLPIRSPYTPVDYKILAMEMAYLTPRRKGIFSVRSMGSAYGGSGGLGPSFSRMDSQGSTRSTMGASGTQEQDMLLAIENNGTVSPRPMIVHRQNSSTRTFATSSSMSS-SADTAASPGKLSLILFAASILFLFADQNLLAPNLTAVAHDFGFDDAQRDIKLGGQIPFAFFVVGGAVSVVVGPLADVMNRKNLYVWTCLVGTIPCILTYWVQTFNQFFVLRTLTGVAVGGAFPLIYSLAADITTPDQRALASSLITISMGLGSTLGQGVAGFVGPTYGWRLPFVIIAIPSILVISLVVLTMKEPP 349
MVKTYNTL PF S EE T + K HLH F + A TD+++ P+ SP+TP DYK +AMEMAYLTPRRKG S R +G + G GG+ PS S ++ ++ + E+ LLA E + + +V R++ S+R + SSS ++ S++TAA+P KL+L+LFAASILFLFADQNLLAPNLTAVA D GFDDA+RD+KLGGQIPFAFFVVGGAVS+VVGP+ADVMNRK LYV TCLVG IPC+LTYWV +FNQFF+LRTLTGVAVGGAFPLIYSLAADITTPDQRALASSLITISMG+G TLGQGVAGFVGP YGWR+PFVIIA+PS+LVI+LV+LTM+EPP
Sbjct: 1 MVKTYNTLSGPFSSHGEETPAGTPSSLPKHHLHQFPSSEALTDETEFPLPSPFTPADYKSMAMEMAYLTPRRKGPASDRRLGLSVSG-GGVDPSLSFQPEPRTSDASPSYTVDHEERSLLA-EGTEPSALQTQVVRRRSPSSRPSSFSSSFATTSSETAAAPSKLTLLLFAASILFLFADQNLLAPNLTAVARDMGFDDAERDLKLGGQIPFAFFVVGGAVSIVVGPMADVMNRKTLYVCTCLVGIIPCLLTYWVVSFNQFFLLRTLTGVAVGGAFPLIYSLAADITTPDQRALASSLITISMGVGGTLGQGVAGFVGPVYGWRMPFVIIALPSLLVIALVMLTMEEPP 347
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G01950.1 ID=NO01G01950.1|Name=NO01G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1998bp
ATGGTGAAGACGTACAACACCCTCCCGCTGCCCTTTCCTTCCGGCAGTGA
GGAGAGGAGGCCTACGACCGCCCCAACATCAGCGAAGTCCCACCTACACC
TCTTCCAAACCTTGCCAGCCGAGACCGACGACAGCGATCTACCCATTCGA
AGCCCCTATACTCCTGTCGACTACAAAATTTTGGCCATGGAGATGGCGTA
CCTGACACCACGGCGGAAGGGGATCTTCTCTGTACGCAGCATGGGCTCTG
CTTATGGTGGTAGTGGAGGGCTGGGGCCCTCTTTTTCTAGGATGGACTCT
CAGGGCAGCACGAGGAGCACAATGGGCGCCAGCGGCACTCAGGAACAAGA
CATGCTTCTTGCTATTGAAAATAATGGTACTGTGTCTCCTCGACCAATGA
TCGTGCATCGCCAGAATTCATCAACACGTACTTTTGCTACATCGTCTTCG
ATGTCCTCCTCCGCCGACACCGCCGCGTCCCCTGGCAAGCTCAGCTTGAT
TCTCTTCGCCGCCTCTATCCTCTTCCTCTTTGCGGATCAAAATCTCCTGG
CACCCAACTTAACGGCCGTTGCCCATGACTTTGGCTTTGATGATGCCCAG
CGGGATATTAAGTTAGGGGGACAGATCCCATTTGCGTTTTTTGTGGTAGG
AGGCGCCGTGTCAGTGGTGGTGGGACCGTTGGCCGACGTGATGAATCGGA
AGAATTTGTATGTTTGGACATGTTTGGTCGGGACTATCCCTTGTATCTTG
ACGTACTGGGTGCAGACTTTCAATCAATTTTTTGTTCTGCGGACCTTGAC
GGGGGTGGCGGTGGGGGGGGCGTTCCCGTTGATTTATTCCTTGGCTGCTG
ATATTACCACGCCGGACCAGCGCGCATTGGCGTCATCATTGATCACGATT
AGTATGGGCTTGGGAAGTACGTTAGGACAGGGCGTAGCCGGGTTCGTGGG
GCCGACATATGGATGGAGATTACCGTTTGTAATCATTGCGATCCCATCGA
TTCTTGTCATTTCCCTGGTTGTCTTAACCATGAAGGAGCCGCCACGGTCA
ACTGGACACCAACAGCAGCATGAACAGCAGATAGAAGGTGATGCACGGAT
TATTCAAGTGGAAGAGGTGGGGATGTTGGGTGCCGGGGGAGAAGACGGCT
GGGAGGAAGTAGAGGAGGAGGAGGAAAAGGAGAGGGGACCGAGCCTCGCT
CGATTGCGTGCAGGGGCTTGCATGGTGCAGCTTCGCAAATTTTTGGATGT
TTTTATCGTCAGGACGAATTTGTTGGCATTTTGTCAGTCCATGCCTGGAT
GTCTCCCCTGGGGGGTGATTTCCGCATTTTTGACTGATTATTTGCATGAA
CAACGGGGAATGACGGTCGAAAGTGCTACAAGTCTTATGTTCGTCTTTGG
CCTTGGTTGTTTCGCCGGTAACCTTGCTGGAGGGATTTTAGGACAATGGG
TGTATAATCGGTCGAAGGAGGCGGCTGCTGTCTTGATGGCCGCGACAACG
GCGTTGGGGTTTTTGCCGATGGCGTGGTTGATCAATGCGAATTCGGATAC
AATCAGCACACCGGGGGGAGGGTTTACCCTTATTGCGGCCGTGGTTGCAT
TTTCGGGGGGCATCGCTGCATTTACGGGTCCATTGGTCAGGGCGTTTGTA
ATGCAGGTGAATAGTAGTAGGAATCGGGGTACTGTGTTTAGTGTCTTTAT
GGTGGCGGATGATTTGGGGAAGGGGTTGGGACCGGCGATTGTGAGCTTAT
TGATACCGGAGTGGGGGAGGCTGACGGCATTTAACATTTCCCTAGGGGGG
TGGATCTTATGTGCCGTCTTTTTGGGACTGTTGGCTTTCACGATTCGACC
GGACGAAGAGGCGCTGCTTGAGCAGTTGGCGGAGGAGGCCAGGCAGATAC
AGATGCGGCAGAACAAGCAGCAGCAACAGCAGCAGCAGGGGGTATTGTCG
TCGCCGGTGGTGACAAGAGTGAATGGCGTGCAGAGCGTACATATCTAG back to topprotein sequence of NO01G01950.1 >NO01G01950.1-protein ID=NO01G01950.1-protein|Name=NO01G01950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=666bp
MVKTYNTLPLPFPSGSEERRPTTAPTSAKSHLHLFQTLPAETDDSDLPIR
SPYTPVDYKILAMEMAYLTPRRKGIFSVRSMGSAYGGSGGLGPSFSRMDS
QGSTRSTMGASGTQEQDMLLAIENNGTVSPRPMIVHRQNSSTRTFATSSS
MSSSADTAASPGKLSLILFAASILFLFADQNLLAPNLTAVAHDFGFDDAQ
RDIKLGGQIPFAFFVVGGAVSVVVGPLADVMNRKNLYVWTCLVGTIPCIL
TYWVQTFNQFFVLRTLTGVAVGGAFPLIYSLAADITTPDQRALASSLITI
SMGLGSTLGQGVAGFVGPTYGWRLPFVIIAIPSILVISLVVLTMKEPPRS
TGHQQQHEQQIEGDARIIQVEEVGMLGAGGEDGWEEVEEEEEKERGPSLA
RLRAGACMVQLRKFLDVFIVRTNLLAFCQSMPGCLPWGVISAFLTDYLHE
QRGMTVESATSLMFVFGLGCFAGNLAGGILGQWVYNRSKEAAAVLMAATT
ALGFLPMAWLINANSDTISTPGGGFTLIAAVVAFSGGIAAFTGPLVRAFV
MQVNSSRNRGTVFSVFMVADDLGKGLGPAIVSLLIPEWGRLTAFNISLGG
WILCAVFLGLLAFTIRPDEEALLEQLAEEARQIQMRQNKQQQQQQQGVLS
SPVVTRVNGVQSVHI* back to topmRNA from alignment at chr1:492886..494883- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G01950.1 ID=NO01G01950.1|Name=NO01G01950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1998bp|location=Sequence derived from alignment at chr1:492886..494883- (Nannochloropsis oceanica)
ATGGTGAAGACGTACAACACCCTCCCGCTGCCCTTTCCTTCCGGCAGTGA
GGAGAGGAGGCCTACGACCGCCCCAACATCAGCGAAGTCCCACCTACACC
TCTTCCAAACCTTGCCAGCCGAGACCGACGACAGCGATCTACCCATTCGA
AGCCCCTATACTCCTGTCGACTACAAAATTTTGGCCATGGAGATGGCGTA
CCTGACACCACGGCGGAAGGGGATCTTCTCTGTACGCAGCATGGGCTCTG
CTTATGGTGGTAGTGGAGGGCTGGGGCCCTCTTTTTCTAGGATGGACTCT
CAGGGCAGCACGAGGAGCACAATGGGCGCCAGCGGCACTCAGGAACAAGA
CATGCTTCTTGCTATTGAAAATAATGGTACTGTGTCTCCTCGACCAATGA
TCGTGCATCGCCAGAATTCATCAACACGTACTTTTGCTACATCGTCTTCG
ATGTCCTCCTCCGCCGACACCGCCGCGTCCCCTGGCAAGCTCAGCTTGAT
TCTCTTCGCCGCCTCTATCCTCTTCCTCTTTGCGGATCAAAATCTCCTGG
CACCCAACTTAACGGCCGTTGCCCATGACTTTGGCTTTGATGATGCCCAG
CGGGATATTAAGTTAGGGGGACAGATCCCATTTGCGTTTTTTGTGGTAGG
AGGCGCCGTGTCAGTGGTGGTGGGACCGTTGGCCGACGTGATGAATCGGA
AGAATTTGTATGTTTGGACATGTTTGGTCGGGACTATCCCTTGTATCTTG
ACGTACTGGGTGCAGACTTTCAATCAATTTTTTGTTCTGCGGACCTTGAC
GGGGGTGGCGGTGGGGGGGGCGTTCCCGTTGATTTATTCCTTGGCTGCTG
ATATTACCACGCCGGACCAGCGCGCATTGGCGTCATCATTGATCACGATT
AGTATGGGCTTGGGAAGTACGTTAGGACAGGGCGTAGCCGGGTTCGTGGG
GCCGACATATGGATGGAGATTACCGTTTGTAATCATTGCGATCCCATCGA
TTCTTGTCATTTCCCTGGTTGTCTTAACCATGAAGGAGCCGCCACGGTCA
ACTGGACACCAACAGCAGCATGAACAGCAGATAGAAGGTGATGCACGGAT
TATTCAAGTGGAAGAGGTGGGGATGTTGGGTGCCGGGGGAGAAGACGGCT
GGGAGGAAGTAGAGGAGGAGGAGGAAAAGGAGAGGGGACCGAGCCTCGCT
CGATTGCGTGCAGGGGCTTGCATGGTGCAGCTTCGCAAATTTTTGGATGT
TTTTATCGTCAGGACGAATTTGTTGGCATTTTGTCAGTCCATGCCTGGAT
GTCTCCCCTGGGGGGTGATTTCCGCATTTTTGACTGATTATTTGCATGAA
CAACGGGGAATGACGGTCGAAAGTGCTACAAGTCTTATGTTCGTCTTTGG
CCTTGGTTGTTTCGCCGGTAACCTTGCTGGAGGGATTTTAGGACAATGGG
TGTATAATCGGTCGAAGGAGGCGGCTGCTGTCTTGATGGCCGCGACAACG
GCGTTGGGGTTTTTGCCGATGGCGTGGTTGATCAATGCGAATTCGGATAC
AATCAGCACACCGGGGGGAGGGTTTACCCTTATTGCGGCCGTGGTTGCAT
TTTCGGGGGGCATCGCTGCATTTACGGGTCCATTGGTCAGGGCGTTTGTA
ATGCAGGTGAATAGTAGTAGGAATCGGGGTACTGTGTTTAGTGTCTTTAT
GGTGGCGGATGATTTGGGGAAGGGGTTGGGACCGGCGATTGTGAGCTTAT
TGATACCGGAGTGGGGGAGGCTGACGGCATTTAACATTTCCCTAGGGGGG
TGGATCTTATGTGCCGTCTTTTTGGGACTGTTGGCTTTCACGATTCGACC
GGACGAAGAGGCGCTGCTTGAGCAGTTGGCGGAGGAGGCCAGGCAGATAC
AGATGCGGCAGAACAAGCAGCAGCAACAGCAGCAGCAGGGGGTATTGTCG
TCGCCGGTGGTGACAAGAGTGAATGGCGTGCAGAGCGTACATATCTAG back to topCoding sequence (CDS) from alignment at chr1:492886..494883- >NO01G01950.1 ID=NO01G01950.1|Name=NO01G01950.1|organism=Nannochloropsis oceanica|type=CDS|length=1998bp|location=Sequence derived from alignment at chr1:492886..494883- (Nannochloropsis oceanica)
ATGGTGAAGACGTACAACACCCTCCCGCTGCCCTTTCCTTCCGGCAGTGA
GGAGAGGAGGCCTACGACCGCCCCAACATCAGCGAAGTCCCACCTACACC
TCTTCCAAACCTTGCCAGCCGAGACCGACGACAGCGATCTACCCATTCGA
AGCCCCTATACTCCTGTCGACTACAAAATTTTGGCCATGGAGATGGCGTA
CCTGACACCACGGCGGAAGGGGATCTTCTCTGTACGCAGCATGGGCTCTG
CTTATGGTGGTAGTGGAGGGCTGGGGCCCTCTTTTTCTAGGATGGACTCT
CAGGGCAGCACGAGGAGCACAATGGGCGCCAGCGGCACTCAGGAACAAGA
CATGCTTCTTGCTATTGAAAATAATGGTACTGTGTCTCCTCGACCAATGA
TCGTGCATCGCCAGAATTCATCAACACGTACTTTTGCTACATCGTCTTCG
ATGTCCTCCTCCGCCGACACCGCCGCGTCCCCTGGCAAGCTCAGCTTGAT
TCTCTTCGCCGCCTCTATCCTCTTCCTCTTTGCGGATCAAAATCTCCTGG
CACCCAACTTAACGGCCGTTGCCCATGACTTTGGCTTTGATGATGCCCAG
CGGGATATTAAGTTAGGGGGACAGATCCCATTTGCGTTTTTTGTGGTAGG
AGGCGCCGTGTCAGTGGTGGTGGGACCGTTGGCCGACGTGATGAATCGGA
AGAATTTGTATGTTTGGACATGTTTGGTCGGGACTATCCCTTGTATCTTG
ACGTACTGGGTGCAGACTTTCAATCAATTTTTTGTTCTGCGGACCTTGAC
GGGGGTGGCGGTGGGGGGGGCGTTCCCGTTGATTTATTCCTTGGCTGCTG
ATATTACCACGCCGGACCAGCGCGCATTGGCGTCATCATTGATCACGATT
AGTATGGGCTTGGGAAGTACGTTAGGACAGGGCGTAGCCGGGTTCGTGGG
GCCGACATATGGATGGAGATTACCGTTTGTAATCATTGCGATCCCATCGA
TTCTTGTCATTTCCCTGGTTGTCTTAACCATGAAGGAGCCGCCACGGTCA
ACTGGACACCAACAGCAGCATGAACAGCAGATAGAAGGTGATGCACGGAT
TATTCAAGTGGAAGAGGTGGGGATGTTGGGTGCCGGGGGAGAAGACGGCT
GGGAGGAAGTAGAGGAGGAGGAGGAAAAGGAGAGGGGACCGAGCCTCGCT
CGATTGCGTGCAGGGGCTTGCATGGTGCAGCTTCGCAAATTTTTGGATGT
TTTTATCGTCAGGACGAATTTGTTGGCATTTTGTCAGTCCATGCCTGGAT
GTCTCCCCTGGGGGGTGATTTCCGCATTTTTGACTGATTATTTGCATGAA
CAACGGGGAATGACGGTCGAAAGTGCTACAAGTCTTATGTTCGTCTTTGG
CCTTGGTTGTTTCGCCGGTAACCTTGCTGGAGGGATTTTAGGACAATGGG
TGTATAATCGGTCGAAGGAGGCGGCTGCTGTCTTGATGGCCGCGACAACG
GCGTTGGGGTTTTTGCCGATGGCGTGGTTGATCAATGCGAATTCGGATAC
AATCAGCACACCGGGGGGAGGGTTTACCCTTATTGCGGCCGTGGTTGCAT
TTTCGGGGGGCATCGCTGCATTTACGGGTCCATTGGTCAGGGCGTTTGTA
ATGCAGGTGAATAGTAGTAGGAATCGGGGTACTGTGTTTAGTGTCTTTAT
GGTGGCGGATGATTTGGGGAAGGGGTTGGGACCGGCGATTGTGAGCTTAT
TGATACCGGAGTGGGGGAGGCTGACGGCATTTAACATTTCCCTAGGGGGG
TGGATCTTATGTGCCGTCTTTTTGGGACTGTTGGCTTTCACGATTCGACC
GGACGAAGAGGCGCTGCTTGAGCAGTTGGCGGAGGAGGCCAGGCAGATAC
AGATGCGGCAGAACAAGCAGCAGCAACAGCAGCAGCAGGGGGTATTGTCG
TCGCCGGTGGTGACAAGAGTGAATGGCGTGCAGAGCGTACATATCTAG back to top
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