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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr1 | genome | chr1:483896..487278 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO01G01920.1 vs.
Match: EWM29116.1 (nucleotide sugar transporter family protein [Nannochloropsis gaditana]) HSP 1 Score: 510.8 bits (1314), Expect = 3.400e-141 Identity = 278/348 (79.89%), Postives = 304/348 (87.36%), Query Frame = 0
Query: 1 MLDMTTVFAMVGNVGSVVGVVIMNKYIVSIDAFNFMVFLSFTHFVFTYFGCCVLLKFRFFTYKPAPLRGVLPVALGSLGSVAFMNLNLAHNSVGFYQLSKLACIPVTIFLERVFYGKTVPGPILLTLIPITIGVGIATVNDVTVNFVGTVFAGFAVLFTSLAQIFTSTYQKQLDCDALQLLYHSSPLIAGGMFCMIPFFDNVRYLVKTEFSIPLVNHVLSSCVLALGVNISNYLVLGKTSPLTYQVLGHLKTILILVLGFVVFHYESNLRAVIGIVVALGGVIAYTELKRQVS-SQGLVTVVNGSSSSSSRG--GMQYSKLETHKDMIPDGEVGEARMLEMLSGPMKV 346
MLDMTT+FAM GNVGSVVGVVIMNKYIV++DAFNFM+FLSFTHFVFTY GC VLL FF YKPAP+RGVLPVALGSLGSVAFMNLNLAHNSVGFYQLSKLACIPVTI LER FYGKTVPGP+L+TLIPITIGVGIATVNDV+VN VGT FA AVLFTSLAQIFTSTYQKQLDCDALQLLYHSSPLIA G F MIPFFDNVRYLV+T S+ L+NHVLSSCVLALGVNISNYLVLGKTSPLTYQVLGHLKTILILVLGFVVF Y+SN RAV+GI++ALGGVIAYTELKR++S QG ++ S S RG G+ YSK+ ++ IPDGE+G A LE++ G MKV
Sbjct: 1 MLDMTTIFAMFGNVGSVVGVVIMNKYIVAVDAFNFMIFLSFTHFVFTYLGCSVLLHLGFFNYKPAPIRGVLPVALGSLGSVAFMNLNLAHNSVGFYQLSKLACIPVTIALERAFYGKTVPGPVLVTLIPITIGVGIATVNDVSVNLVGTAFAALAVLFTSLAQIFTSTYQKQLDCDALQLLYHSSPLIAAGSFLMIPFFDNVRYLVQTSISLSLLNHVLSSCVLALGVNISNYLVLGKTSPLTYQVLGHLKTILILVLGFVVFKYKSNARAVVGILIALGGVIAYTELKRRMSLQQGGRAGMSSSHSGLRRGFEGLSYSKVAADEE-IPDGEIGGAGRLELM-GAMKV 346
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO01G01920.1 ID=NO01G01920.1|Name=NO01G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=3035bp
CCATCACGCCACACCACTGCATGGGCATTGATCTCTTTGGTATGGAATCA
TTGTGGCGTGCAGGTGTGGATGATCAAAGCTCGGACCGACACATCGGCCG
GGTTTTAAATCTCTCTTTCCTGGTCACCTGGCCCAGCACATGTACAAATA
CCCATCGCCACACCCCTCACACGGACATAGGCTTTAGGACTCGCAGCTGG
ACCGTCAGACGCCTCGCTCCAATCGTTCAAGCCTCCGCCGCGCTCTTCTG
TTAGGGTTACGAGACGTGCGCACCTCATCTGATCTCCGGAGTATTAAAAC
CAAGCAGTTTCCCTCCACGACCTACAAAGATGTTGGACATGACCACTGTG
TTCGCCATGGTGGGCAATGTCGGCTCAGTTGTCGGCGTGGTTATCATGAA
CAAATACATCGTCTCGATCGACGCCTTCAACTTTATGGTCTTTCTCTCCT
TCACCCACTTTGTCTTCACCTACTTCGGGTGTTGCGTCCTCCTCAAATTC
CGGTTCTTTACTTACAAACCGGCTCCGCTCCGGGGTGTCCTCCCCGTGGC
CCTTGGCTCGTTGGGCAGTGTGGCATTTATGAATCTGAATCTCGCGCATA
ACTCTGTCGGGTTTTATCAGTTGTCGAAGCTAGCCTGTATCCCGGTGACC
ATTTTTCTGGAACGGGTGTTCTACGGTAAGACCGTGCCAGGACCTATTCT
TTTGACGCTGATCCCCATCACGATTGGAGTGGGCATTGCCACTGTGAATG
ATGTGACTGTTAACTTTGTCGGGACGGTCTTCGCGGGTTTCGCCGTGCTT
TTTACTTCCTTGGCGCAAATTTTCACGTCAACGTACCAGAAGCAACTGGA
TTGCGATGCCTTGCAACTGCTCTATCATTCCTCGCCGCTCATCGCGGGGG
GTATGTTTTGCATGATCCCTTTTTTCGACAACGTCAGGTATCTCGTTAAA
ACAGAGTTTTCCATCCCTCTGGTGAATCATGTGCTGTCCTCGTGCGTGCT
TGCTCTCGGTGTGAACATCTCGAATTATCTCGTGCTGGGGAAGACGTCCC
CTCTAACCTACCAGGTGCTGGGGCACTTGAAGACGATTTTGATTCTAGTG
TTAGGCTTTGTGGTGTTCCATTATGAATCCAATTTGAGGGCGGTGATTGG
GATTGTGGTTGCTCTTGGGGGAGTGATCGCCTACACCGAGTTAAAGCGAC
AGGTGTCGTCGCAGGGGCTTGTGACGGTTGTGAATGGCAGCAGCAGCAGT
AGCAGCAGGGGAGGGATGCAGTATTCCAAGCTGGAGACACATAAGGACAT
GATCCCTGATGGTGAGGTAGGGGAGGCGAGGATGCTTGAGATGTTGTCAG
GGCCGATGAAGGTCTAAGAGGAAGGAGGGAAGGAGGAAGGAGGGAGGGGC
AAATATGGTGACGGGGGTAGGGGTACAAATCAAGCTGGAAACGCAGGAAG
TGATGATGGGGTGTGGAGGCATTAAAGCAGGATGTATTGTCGGGGCCAAT
CAAGGTCTCGAAGACGCAGCAGCAGCGGCAGTAGCAGCAGTTATAGTGGT
GTTCGTGGTAGTGGGAAGGAAGTAAATATGATGCGACGGTTGAATAAAAA
TGTGACCAGTGTGAGTGAGGGAAGGTGGGACGGAGTGGTAGAATGGAGAA
TCGAAACGAGAATGGCAGATACAGATAGGCACAGAGACAGGCACAGAGAG
AGAAAGCATGAAAAAAGAACCCTTTAATCGTCATTACTTAAGAGCCTCAA
GAATGCTTCCAGCGAAGCAGGATAAGCAGCAGTAGCAGCAGCAGCAGCAG
CCGTAGGAGCGGTCTCTTGTCTATCTGTCTGGGCATGTCTGTGCCTGTAT
CCACCATAGAGAATATGTCTGTCAGGAAATGTCTGAGAAAAGGTTCGGCA
CTGGTTCTGTGTTCGAGACTGGAAAAAAAGAAGGATAGAGAGACTGAAAC
TAAAGGGTGGGGGAAATGGAAGGAAAAGTAGGAGAGAGAAAATTACTGAG
TGGAAAATGGAAGGACTGGTCAAAAGAGCAGATTGAAAGCGTAGGGAGAG
AGTGTGTGATTAAAGAGGGGGTAGAAATAATTTCATCGTGTACCACCAGA
ACTTCATGAATCAAAGAGTGGCATCCGTCGACCCACCAAAAAACACCCCT
CCGGGTGCTATGAAATAAGAAGAAGAATAAGAAATATCCCTGGGAAGACA
GAAGGGGGCCCAGAAGAAAAACGTAAAGAGAGCAAGAGACAAAAGGTGAA
TGAAAGGAAAACAGGAGGCTGTAGACTGTGCGACTCTCCCCTTCCTCCCA
CCCACCCCCCCAAAAAAAGAACCAGAACCATCCAAAGGGAGGGACAACAT
TTGAAGACAGGGAAAAAAGAATAATCCAAAAATGTCCAGCATGAATGAAA
TTATTCGTCCTTTTGTTTGTTTCGTCCTCACATATGAATTTTTGCTTTGC
TATGGTATCTCTATTTGCACCCTTCCGTTGGTCAGCTCTCAAAAAGAGGC
GAGGTCCAACCTGCTGCAATTCTTCCTCAAACCCTCGTTCTCCCGTTATC
TAAAGCTTGACACGCTTCTGCTTTTTGGCACTGTACGCCTGTCCAGACTT
CTTGAACCGTGACATGACGCGCGCCTTGCCCGTGGCCCTCTTACCAGGCA
CTACCTCCATCCCCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCCGATTCC
TCCGCTGCCGGGGGCATCTCGACATCCTCCTCGGACGCTTTCTTCGCCAC
CGCCTCCTTCTTGTTGCTGCTGCTCTTCTTGGTCTTGTTGTTGATGGCCA
TGCGACGTTGTACGGACATGGCTTGTGCTTCACTTCCCGGTAACCTCCTT
AAAATCCCTCGTAGCTTCATAATGGAGGGCTGGTCTGTCTGAGTGGAGAG
GCTCGCCGCAAGCCGCTCGGCTTGCTCCTTTAGCTGCTTAGTCTCTGCCG
GCACTCCCAGTGTCCGCCGCCGCTCGGAGGCCCAGTGTTTGCGGGTCTTG
GAGCGCGCGGATTTGGCCATATCTCTGAAGCTTTT back to topprotein sequence of NO01G01920.1 >NO01G01920.1-protein ID=NO01G01920.1-protein|Name=NO01G01920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MLDMTTVFAMVGNVGSVVGVVIMNKYIVSIDAFNFMVFLSFTHFVFTYFG
CCVLLKFRFFTYKPAPLRGVLPVALGSLGSVAFMNLNLAHNSVGFYQLSK
LACIPVTIFLERVFYGKTVPGPILLTLIPITIGVGIATVNDVTVNFVGTV
FAGFAVLFTSLAQIFTSTYQKQLDCDALQLLYHSSPLIAGGMFCMIPFFD
NVRYLVKTEFSIPLVNHVLSSCVLALGVNISNYLVLGKTSPLTYQVLGHL
KTILILVLGFVVFHYESNLRAVIGIVVALGGVIAYTELKRQVSSQGLVTV
VNGSSSSSSRGGMQYSKLETHKDMIPDGEVGEARMLEMLSGPMKV* back to topmRNA from alignment at chr1:483896..487278- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO01G01920.1 ID=NO01G01920.1|Name=NO01G01920.1|organism=Nannochloropsis oceanica|type=mRNA|length=3383bp|location=Sequence derived from alignment at chr1:483896..487278- (Nannochloropsis oceanica)
CCATCACGCCACACCACTGCATGGGCATTGATCTCTTTGGTATGGAATCA
TTGTGGCGTGCAGGTGTGGATGATCAAAGCTCGGACCGACACATCGGCCG
GGTTTTAAATCTCTCTTTCCTGGTCACCTGGCCCAGCACATGTACAAATA
CCCATCGCCACACCCCTCACACGGACATAGGCTTTAGGACTCGCAGCTGG
ACCGTCAGACGCCTCGCTCCAATCGTTCAAGCCTCCGCCGCGCTCTTCTG
TTAGGGTTACGAGACGTGCGCACCTCATCTGATCTCCGGAGTATTAAAAC
CAAGCAGTTTCCCTCCACGACCTACAAAGGTAAGGTGTGAGTGCTGTGCT
GGTGCGACATGGGCGAAAGGATGACATGATGCAAGGGCTAGCACTCGAAA
TTGGATAGGCCCATGCCCACACACTCAGCGCGCAGCGGGCGGCGTTCGAT
GATGATCGTAGACCGTGCTTACTTGCCCTCCGGCAATTTGGCTTTTGCCT
GCTCCCTGTATACCACAACGCAGATCTCACCAGCCCTTTTTGTGTTTTTT
CCTTCTTGCGCGGCCGAGTCCGCGGTGAAAGACGTTTTCCTTCCTCCACG
CTCTGTGCCCTCTCACGCAGACAAAACCATTCAGGTCCTCCCTCCCCTCC
CTTTCTCCCCTCCTCCCCTTGGCGCAGATGTTGGACATGACCACTGTGTT
CGCCATGGTGGGCAATGTCGGCTCAGTTGTCGGCGTGGTTATCATGAACA
AATACATCGTCTCGATCGACGCCTTCAACTTTATGGTCTTTCTCTCCTTC
ACCCACTTTGTCTTCACCTACTTCGGGTGTTGCGTCCTCCTCAAATTCCG
GTTCTTTACTTACAAACCGGCTCCGCTCCGGGGTGTCCTCCCCGTGGCCC
TTGGCTCGTTGGGCAGTGTGGCATTTATGAATCTGAATCTCGCGCATAAC
TCTGTCGGGTTTTATCAGTTGTCGAAGCTAGCCTGTATCCCGGTGACCAT
TTTTCTGGAACGGGTGTTCTACGGTAAGACCGTGCCAGGACCTATTCTTT
TGACGCTGATCCCCATCACGATTGGAGTGGGCATTGCCACTGTGAATGAT
GTGACTGTTAACTTTGTCGGGACGGTCTTCGCGGGTTTCGCCGTGCTTTT
TACTTCCTTGGCGCAAATTTTCACGTCAACGTACCAGAAGCAACTGGATT
GCGATGCCTTGCAACTGCTCTATCATTCCTCGCCGCTCATCGCGGGGGGT
ATGTTTTGCATGATCCCTTTTTTCGACAACGTCAGGTATCTCGTTAAAAC
AGAGTTTTCCATCCCTCTGGTGAATCATGTGCTGTCCTCGTGCGTGCTTG
CTCTCGGTGTGAACATCTCGAATTATCTCGTGCTGGGGAAGACGTCCCCT
CTAACCTACCAGGTGCTGGGGCACTTGAAGACGATTTTGATTCTAGTGTT
AGGCTTTGTGGTGTTCCATTATGAATCCAATTTGAGGGCGGTGATTGGGA
TTGTGGTTGCTCTTGGGGGAGTGATCGCCTACACCGAGTTAAAGCGACAG
GTGTCGTCGCAGGGGCTTGTGACGGTTGTGAATGGCAGCAGCAGCAGTAG
CAGCAGGGGAGGGATGCAGTATTCCAAGCTGGAGACACATAAGGACATGA
TCCCTGATGGTGAGGTAGGGGAGGCGAGGATGCTTGAGATGTTGTCAGGG
CCGATGAAGGTCTAAGAGGAAGGAGGGAAGGAGGAAGGAGGGAGGGGCAA
ATATGGTGACGGGGGTAGGGGTACAAATCAAGCTGGAAACGCAGGAAGTG
ATGATGGGGTGTGGAGGCATTAAAGCAGGATGTATTGTCGGGGCCAATCA
AGGTCTCGAAGACGCAGCAGCAGCGGCAGTAGCAGCAGTTATAGTGGTGT
TCGTGGTAGTGGGAAGGAAGTAAATATGATGCGACGGTTGAATAAAAATG
TGACCAGTGTGAGTGAGGGAAGGTGGGACGGAGTGGTAGAATGGAGAATC
GAAACGAGAATGGCAGATACAGATAGGCACAGAGACAGGCACAGAGAGAG
AAAGCATGAAAAAAGAACCCTTTAATCGTCATTACTTAAGAGCCTCAAGA
ATGCTTCCAGCGAAGCAGGATAAGCAGCAGTAGCAGCAGCAGCAGCAGCC
GTAGGAGCGGTCTCTTGTCTATCTGTCTGGGCATGTCTGTGCCTGTATCC
ACCATAGAGAATATGTCTGTCAGGAAATGTCTGAGAAAAGGTTCGGCACT
GGTTCTGTGTTCGAGACTGGAAAAAAAGAAGGATAGAGAGACTGAAACTA
AAGGGTGGGGGAAATGGAAGGAAAAGTAGGAGAGAGAAAATTACTGAGTG
GAAAATGGAAGGACTGGTCAAAAGAGCAGATTGAAAGCGTAGGGAGAGAG
TGTGTGATTAAAGAGGGGGTAGAAATAATTTCATCGTGTACCACCAGAAC
TTCATGAATCAAAGAGTGGCATCCGTCGACCCACCAAAAAACACCCCTCC
GGGTGCTATGAAATAAGAAGAAGAATAAGAAATATCCCTGGGAAGACAGA
AGGGGGCCCAGAAGAAAAACGTAAAGAGAGCAAGAGACAAAAGGTGAATG
AAAGGAAAACAGGAGGCTGTAGACTGTGCGACTCTCCCCTTCCTCCCACC
CACCCCCCCAAAAAAAGAACCAGAACCATCCAAAGGGAGGGACAACATTT
GAAGACAGGGAAAAAAGAATAATCCAAAAATGTCCAGCATGAATGAAATT
ATTCGTCCTTTTGTTTGTTTCGTCCTCACATATGAATTTTTGCTTTGCTA
TGGTATCTCTATTTGCACCCTTCCGTTGGTCAGCTCTCAAAAAGAGGCGA
GGTCCAACCTGCTGCAATTCTTCCTCAAACCCTCGTTCTCCCGTTATCTA
AAGCTTGACACGCTTCTGCTTTTTGGCACTGTACGCCTGTCCAGACTTCT
TGAACCGTGACATGACGCGCGCCTTGCCCGTGGCCCTCTTACCAGGCACT
ACCTCCATCCCCTCCGCCTCCTCCTCCTCCTCCTCCTCCTCCGATTCCTC
CGCTGCCGGGGGCATCTCGACATCCTCCTCGGACGCTTTCTTCGCCACCG
CCTCCTTCTTGTTGCTGCTGCTCTTCTTGGTCTTGTTGTTGATGGCCATG
CGACGTTGTACGGACATGGCTTGTGCTTCACTTCCCGGTAACCTCCTTAA
AATCCCTCGTAGCTTCATAATGGAGGGCTGGTCTGTCTGAGTGGAGAGGC
TCGCCGCAAGCCGCTCGGCTTGCTCCTTTAGCTGCTTAGTCTCTGCCGGC
ACTCCCAGTGTCCGCCGCCGCTCGGAGGCCCAGTGTTTGCGGGTCTTGGA
GCGCGCGGATTTGGCCATATCTCTGAAGCTTTT back to topCoding sequence (CDS) from alignment at chr1:483896..487278- >NO01G01920.1 ID=NO01G01920.1|Name=NO01G01920.1|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at chr1:483896..487278- (Nannochloropsis oceanica)
ATGTTGGACATGACCACTGTGTTCGCCATGGTGGGCAATGTCGGCTCAGT
TGTCGGCGTGGTTATCATGAACAAATACATCGTCTCGATCGACGCCTTCA
ACTTTATGGTCTTTCTCTCCTTCACCCACTTTGTCTTCACCTACTTCGGG
TGTTGCGTCCTCCTCAAATTCCGGTTCTTTACTTACAAACCGGCTCCGCT
CCGGGGTGTCCTCCCCGTGGCCCTTGGCTCGTTGGGCAGTGTGGCATTTA
TGAATCTGAATCTCGCGCATAACTCTGTCGGGTTTTATCAGTTGTCGAAG
CTAGCCTGTATCCCGGTGACCATTTTTCTGGAACGGGTGTTCTACGGTAA
GACCGTGCCAGGACCTATTCTTTTGACGCTGATCCCCATCACGATTGGAG
TGGGCATTGCCACTGTGAATGATGTGACTGTTAACTTTGTCGGGACGGTC
TTCGCGGGTTTCGCCGTGCTTTTTACTTCCTTGGCGCAAATTTTCACGTC
AACGTACCAGAAGCAACTGGATTGCGATGCCTTGCAACTGCTCTATCATT
CCTCGCCGCTCATCGCGGGGGGTATGTTTTGCATGATCCCTTTTTTCGAC
AACGTCAGGTATCTCGTTAAAACAGAGTTTTCCATCCCTCTGGTGAATCA
TGTGCTGTCCTCGTGCGTGCTTGCTCTCGGTGTGAACATCTCGAATTATC
TCGTGCTGGGGAAGACGTCCCCTCTAACCTACCAGGTGCTGGGGCACTTG
AAGACGATTTTGATTCTAGTGTTAGGCTTTGTGGTGTTCCATTATGAATC
CAATTTGAGGGCGGTGATTGGGATTGTGGTTGCTCTTGGGGGAGTGATCG
CCTACACCGAGTTAAAGCGACAGGTGTCGTCGCAGGGGCTTGTGACGGTT
GTGAATGGCAGCAGCAGCAGTAGCAGCAGGGGAGGGATGCAGTATTCCAA
GCTGGAGACACATAAGGACATGATCCCTGATGGTGAGGTAGGGGAGGCGA
GGATGCTTGAGATGTTGTCAGGGCCGATGAAGGTCTAA back to top
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