NO01G01910.1, NO01G01910.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO01G01910.1
Unique NameNO01G01910.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1227
Alignment locationchr1:482153..483379 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:482153..483379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO01G01910.1 vs.
Match: EWM29190.1 (atp synthase mitochondrial f1 complex assembly factor 2 [Nannochloropsis gaditana])

HSP 1 Score: 572.4 bits (1474), Expect = 1.100e-159
Identity = 305/424 (71.93%), Postives = 340/424 (80.19%), Query Frame = 0
Query:    1 MSATLKATCRFSALLRRALQVQTHHLSPAPFVQQQQNPHTLLVSSAPFNNITS-------------TAFTSTPTRASFSVSSSSSSTHKSEDVLPFPHVGGRPTDEEMAAEDAAAEAEPQESHMKDGLAIKMATSSFMGRRRFYKSVGVRPSLDEAGKHVQHYEVTLDGYPLKTPGTEKPYRLPTKGLALAVALEWDQQVTYKGIEPTYMPLTGMATIALDEIIFSRQSTIDRCLRYLATDTVCYCFPEEEDDHKLLRRQQKAWEPLLAWLKDEYGVHIAKPSHMLGVCHNTPETLKKVGLMLQEMDPFTLAAFLSLVLDLKSVITALAVVFRHVTIEEACQASALEEMHQKAAWGSVDLYHELEETVLYSQAAAASSFLWLLAEEEKGSKK---AKAGLMPHQELRARVKARLRKEFPESTPK 409
            MS   +A+ RF+  LR   Q Q    +  P   + Q+ H L   S+    I S              A    P  ++   S SS+ST   +DV P PH+GGRP+DEEMAAEDAAA AE +ESHMKDGLAIKMATSSF GRRRFYK+VGVRPSLD +G+ V HYEVTLDGYPLKTPGTEK YRLPT+GLALAVALEWDQQVTYKG+EPTYMPLTG+ATIALDEI+FSR STIDRCLRYLATDTVCYCFPEEEDDHKLLRRQQK WEPLL WL+DE+GVHI KP+HML VCHN+PETL+KV +MLQEMDPFTLAAFLSLVLDLKSVITALA+VFRHVT+EEACQASALEE HQKAAWGSVDLYHELEETVLY+Q AAASSFLWLL EEE G  K     AG+MPH EL+ARVKARL+KEFP+STP+
Sbjct:    1 MSTVPRASLRFTRTLRGPGQRQIRGRNSTP---RSQSRHALTYHSSLTAGIASWGPVVRHAASLAPLACNGLPRSSACRCSFSSTST---QDVPPLPHMGGRPSDEEMAAEDAAAAAEMEESHMKDGLAIKMATSSFTGRRRFYKTVGVRPSLDPSGRQVHHYEVTLDGYPLKTPGTEKAYRLPTEGLALAVALEWDQQVTYKGVEPTYMPLTGIATIALDEIVFSRHSTIDRCLRYLATDTVCYCFPEEEDDHKLLRRQQKTWEPLLGWLRDEFGVHITKPAHMLDVCHNSPETLQKVRIMLQEMDPFTLAAFLSLVLDLKSVITALALVFRHVTVEEACQASALEEAHQKAAWGSVDLYHELEETVLYTQTAAASSFLWLLHEEEAGDSKELGKNAGVMPHVELKARVKARLKKEFPDSTPE 418          
The following BLAST results are available for this feature:
BLAST of NO01G01910.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29190.11.100e-15971.93atp synthase mitochondrial f1 complex assembly fac... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO01G01910NO01G01910Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO01G01910.1NO01G01910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO01G01910.1.cds1NO01G01910.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO01G01910.1 ID=NO01G01910.1|Name=NO01G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1227bp
ATGTCCGCTACCCTCAAAGCAACGTGCCGCTTCTCGGCCTTGCTGCGGCG
CGCCTTACAAGTCCAGACTCATCACCTTTCACCAGCCCCCTTCGTGCAGC
AGCAACAGAATCCTCATACCCTCCTCGTCTCCTCTGCTCCCTTCAACAAC
ATCACCAGTACTGCCTTCACAAGCACCCCGACGCGCGCTTCCTTTTCTGT
CTCCTCCTCCTCGTCGTCGACGCACAAATCAGAGGATGTCCTGCCCTTTC
CGCACGTGGGAGGGCGACCGACGGACGAGGAGATGGCAGCAGAGGACGCG
GCGGCCGAAGCGGAGCCCCAAGAGAGTCACATGAAGGACGGACTGGCTAT
CAAGATGGCCACCTCGAGCTTTATGGGTAGGAGGAGGTTTTATAAAAGTG
TCGGCGTCCGCCCCTCCCTCGATGAAGCTGGTAAGCATGTCCAGCACTAC
GAAGTCACTCTTGACGGGTATCCACTCAAAACACCCGGCACCGAAAAGCC
CTACCGCCTCCCGACCAAAGGTCTGGCCCTTGCTGTAGCCTTGGAGTGGG
ATCAGCAAGTGACGTATAAAGGGATAGAGCCTACATATATGCCTTTAACG
GGCATGGCTACCATTGCATTGGACGAGATTATTTTTAGTAGGCAATCGAC
CATAGATAGGTGCTTGCGGTACCTTGCCACGGACACAGTTTGTTACTGCT
TTCCCGAGGAGGAAGACGACCACAAGCTCCTCCGACGACAGCAGAAGGCT
TGGGAGCCATTGTTGGCCTGGTTGAAGGATGAATATGGGGTGCATATTGC
GAAACCCTCGCATATGTTGGGTGTGTGTCATAATACCCCCGAGACCTTAA
AAAAGGTAGGCTTAATGCTTCAGGAGATGGACCCCTTTACCCTGGCAGCA
TTCCTCTCTCTTGTTCTTGATCTCAAGAGTGTGATCACTGCGTTGGCTGT
GGTGTTCAGGCACGTGACGATTGAGGAGGCCTGTCAGGCTAGTGCTTTGG
AAGAGATGCACCAGAAGGCTGCATGGGGGTCAGTGGATCTTTATCACGAG
CTGGAAGAGACGGTACTATATTCGCAGGCTGCCGCGGCGTCAAGTTTTTT
ATGGTTGTTGGCCGAAGAGGAGAAGGGAAGTAAGAAGGCGAAGGCGGGGT
TGATGCCTCACCAAGAGTTGAGGGCGCGGGTCAAGGCAAGGCTGAGGAAG
GAATTTCCGGAGAGCACCCCGAAATAG
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protein sequence of NO01G01910.1

>NO01G01910.1-protein ID=NO01G01910.1-protein|Name=NO01G01910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=409bp
MSATLKATCRFSALLRRALQVQTHHLSPAPFVQQQQNPHTLLVSSAPFNN
ITSTAFTSTPTRASFSVSSSSSSTHKSEDVLPFPHVGGRPTDEEMAAEDA
AAEAEPQESHMKDGLAIKMATSSFMGRRRFYKSVGVRPSLDEAGKHVQHY
EVTLDGYPLKTPGTEKPYRLPTKGLALAVALEWDQQVTYKGIEPTYMPLT
GMATIALDEIIFSRQSTIDRCLRYLATDTVCYCFPEEEDDHKLLRRQQKA
WEPLLAWLKDEYGVHIAKPSHMLGVCHNTPETLKKVGLMLQEMDPFTLAA
FLSLVLDLKSVITALAVVFRHVTIEEACQASALEEMHQKAAWGSVDLYHE
LEETVLYSQAAAASSFLWLLAEEEKGSKKAKAGLMPHQELRARVKARLRK
EFPESTPK*
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mRNA from alignment at chr1:482153..483379+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO01G01910.1 ID=NO01G01910.1|Name=NO01G01910.1|organism=Nannochloropsis oceanica|type=mRNA|length=1227bp|location=Sequence derived from alignment at chr1:482153..483379+ (Nannochloropsis oceanica)
ATGTCCGCTACCCTCAAAGCAACGTGCCGCTTCTCGGCCTTGCTGCGGCG CGCCTTACAAGTCCAGACTCATCACCTTTCACCAGCCCCCTTCGTGCAGC AGCAACAGAATCCTCATACCCTCCTCGTCTCCTCTGCTCCCTTCAACAAC ATCACCAGTACTGCCTTCACAAGCACCCCGACGCGCGCTTCCTTTTCTGT CTCCTCCTCCTCGTCGTCGACGCACAAATCAGAGGATGTCCTGCCCTTTC CGCACGTGGGAGGGCGACCGACGGACGAGGAGATGGCAGCAGAGGACGCG GCGGCCGAAGCGGAGCCCCAAGAGAGTCACATGAAGGACGGACTGGCTAT CAAGATGGCCACCTCGAGCTTTATGGGTAGGAGGAGGTTTTATAAAAGTG TCGGCGTCCGCCCCTCCCTCGATGAAGCTGGTAAGCATGTCCAGCACTAC GAAGTCACTCTTGACGGGTATCCACTCAAAACACCCGGCACCGAAAAGCC CTACCGCCTCCCGACCAAAGGTCTGGCCCTTGCTGTAGCCTTGGAGTGGG ATCAGCAAGTGACGTATAAAGGGATAGAGCCTACATATATGCCTTTAACG GGCATGGCTACCATTGCATTGGACGAGATTATTTTTAGTAGGCAATCGAC CATAGATAGGTGCTTGCGGTACCTTGCCACGGACACAGTTTGTTACTGCT TTCCCGAGGAGGAAGACGACCACAAGCTCCTCCGACGACAGCAGAAGGCT TGGGAGCCATTGTTGGCCTGGTTGAAGGATGAATATGGGGTGCATATTGC GAAACCCTCGCATATGTTGGGTGTGTGTCATAATACCCCCGAGACCTTAA AAAAGGTAGGCTTAATGCTTCAGGAGATGGACCCCTTTACCCTGGCAGCA TTCCTCTCTCTTGTTCTTGATCTCAAGAGTGTGATCACTGCGTTGGCTGT GGTGTTCAGGCACGTGACGATTGAGGAGGCCTGTCAGGCTAGTGCTTTGG AAGAGATGCACCAGAAGGCTGCATGGGGGTCAGTGGATCTTTATCACGAG CTGGAAGAGACGGTACTATATTCGCAGGCTGCCGCGGCGTCAAGTTTTTT ATGGTTGTTGGCCGAAGAGGAGAAGGGAAGTAAGAAGGCGAAGGCGGGGT TGATGCCTCACCAAGAGTTGAGGGCGCGGGTCAAGGCAAGGCTGAGGAAG GAATTTCCGGAGAGCACCCCGAAATAG
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Coding sequence (CDS) from alignment at chr1:482153..483379+

>NO01G01910.1 ID=NO01G01910.1|Name=NO01G01910.1|organism=Nannochloropsis oceanica|type=CDS|length=1227bp|location=Sequence derived from alignment at chr1:482153..483379+ (Nannochloropsis oceanica)
ATGTCCGCTACCCTCAAAGCAACGTGCCGCTTCTCGGCCTTGCTGCGGCG
CGCCTTACAAGTCCAGACTCATCACCTTTCACCAGCCCCCTTCGTGCAGC
AGCAACAGAATCCTCATACCCTCCTCGTCTCCTCTGCTCCCTTCAACAAC
ATCACCAGTACTGCCTTCACAAGCACCCCGACGCGCGCTTCCTTTTCTGT
CTCCTCCTCCTCGTCGTCGACGCACAAATCAGAGGATGTCCTGCCCTTTC
CGCACGTGGGAGGGCGACCGACGGACGAGGAGATGGCAGCAGAGGACGCG
GCGGCCGAAGCGGAGCCCCAAGAGAGTCACATGAAGGACGGACTGGCTAT
CAAGATGGCCACCTCGAGCTTTATGGGTAGGAGGAGGTTTTATAAAAGTG
TCGGCGTCCGCCCCTCCCTCGATGAAGCTGGTAAGCATGTCCAGCACTAC
GAAGTCACTCTTGACGGGTATCCACTCAAAACACCCGGCACCGAAAAGCC
CTACCGCCTCCCGACCAAAGGTCTGGCCCTTGCTGTAGCCTTGGAGTGGG
ATCAGCAAGTGACGTATAAAGGGATAGAGCCTACATATATGCCTTTAACG
GGCATGGCTACCATTGCATTGGACGAGATTATTTTTAGTAGGCAATCGAC
CATAGATAGGTGCTTGCGGTACCTTGCCACGGACACAGTTTGTTACTGCT
TTCCCGAGGAGGAAGACGACCACAAGCTCCTCCGACGACAGCAGAAGGCT
TGGGAGCCATTGTTGGCCTGGTTGAAGGATGAATATGGGGTGCATATTGC
GAAACCCTCGCATATGTTGGGTGTGTGTCATAATACCCCCGAGACCTTAA
AAAAGGTAGGCTTAATGCTTCAGGAGATGGACCCCTTTACCCTGGCAGCA
TTCCTCTCTCTTGTTCTTGATCTCAAGAGTGTGATCACTGCGTTGGCTGT
GGTGTTCAGGCACGTGACGATTGAGGAGGCCTGTCAGGCTAGTGCTTTGG
AAGAGATGCACCAGAAGGCTGCATGGGGGTCAGTGGATCTTTATCACGAG
CTGGAAGAGACGGTACTATATTCGCAGGCTGCCGCGGCGTCAAGTTTTTT
ATGGTTGTTGGCCGAAGAGGAGAAGGGAAGTAAGAAGGCGAAGGCGGGGT
TGATGCCTCACCAAGAGTTGAGGGCGCGGGTCAAGGCAAGGCTGAGGAAG
GAATTTCCGGAGAGCACCCCGAAATAG
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Synonyms
Publications